BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12790.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471432 jgi|Araly1|471432|fgenesh2_kg.1__1386__AT1G12790.1 1635 0.0
Ahg920121 jgi|Araly1|920121|scaffold_101402.1 643 0.0
> Ahg471432 jgi|Araly1|471432|fgenesh2_kg.1__1386__AT1G12790.1
Length=1125
Score = 1635 bits (885), Expect = 0.0
Identities = 1060/1141 (93%), Gaps = 26/1141 (2%)
Strand=Plus/Plus
Query 5 CATCCGCCAAGATTTTCGAATTTCTATAACTCTAGGAGGTTCGTCAATGGCGACGGCGGG 64
|||||||||| ||||||||||||| | |||||| ||||||||||| ||||||||||||||
Sbjct 2 CATCCGCCAATATTTTCGAATTTCAAAAACTCTCGGAGGTTCGTCGATGGCGACGGCGGG 61
Query 65 ATCAAGCTACAGTGTCTCAACAGATCATCAAGTTTCGTCACCTCTCGTGAATCTAGGAAA 124
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 62 ATCAAGCTACAGTGTCTCAACAGATCATCAAGTTCCGTCATCTCTCGTGAATCTAGGAAA 121
Query 125 TGTTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGTTGAACAAGAACCTTCACTGAT 184
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 122 TGGTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGATGAACAAGAACCTTCACTTAT 181
Query 185 CAATTTCATATCTGCGTTTCTTAGCGCAAACTCTTTCCGCCTTAACTTTGTCTCTATCCC 244
|| |||||| ||||| ||||||| ||||||||||||||| || ||||||||||| |||||
Sbjct 182 CAGTTTCATTTCTGCCTTTCTTACCGCAAACTCTTTCCGGCTAAACTTTGTCTCAATCCC 241
Query 245 CCCTGATCTCATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTGACTAAATG 304
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 CCCGGATCTGATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTTACTAAATG 301
Query 305 GGATTTTTCCAATGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGC 364
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGATTGTTCCACTGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGC 361
Query 365 GCAACTTTATGTTGTTGCT-ACACTTTCAACTAAAGAGCAGAGTGATTCTTTTATGCGAT 423
||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||||||
Sbjct 362 GCAACTTTATGTTGTTG-TCACACTTTCAACTAAAGCGCAGAGTGATTCTTTCATGCGAT 420
Query 424 CTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTG 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 CTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCATTGATGCTG 480
Query 484 AGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGA 540
Query 544 AGGTGGCCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCA 603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGTGGCATCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCA 600
Query 604 TCAGATTTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGG 663
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 601 TCAGATTTGTCACATCCATACCCAACATTAACAAACATGATGCAAACACGCTATACCAAG 660
Query 664 CTATTGGTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAG 723
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTATTGGTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAG 720
Query 724 ATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTTTTTCCAAGATCCTGAGTTCTACC 783
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 721 ATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTTCTTCCAAGATCCTGAGTTCTACC 780
Query 784 TCAGTCCCAAATTCAACTGACGACTGCAGAA-ATAGTTTTTCTAAAGGTACCACTCAAAG 842
|||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||||
Sbjct 781 TCAGTCCCAAATTCAACTGATGACTGCAGAACAAAGTTTTTCTAAAGGTAACACTCAAAG 840
Query 843 ACTTTTCGTAGTCCTTTGCTATGGCTACAAGACTACAATACATACACCTATAGGAGCCAG 902
||||||| |||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct 841 ACTTTTCCTAGTCCTTTGCTATGGCTACAA---TACA-TACA--C-C-TATAGGAGCCAG 892
Query 903 TACCGGGTAAGTAAAATGGCTCACTTTTTTATCTTT--GCTAGCTCTGTCTGAATA-CTA 959
|||||||||||||||||| ||||||| |||| |||| ||||||||||||||| || | |
Sbjct 893 TACCGGGTAAGTAAAATGACTCACTTCTTTACCTTTTTGCTAGCTCTGTCTGACTATC-A 951
Query 960 GTACTTTTATTACAT-CCGTTCCTGTTAAA-G-TGTTTAGC-ATCTGAACTTTAATCAAT 1015
|||||||| |||||| || ||||| | ||| | |||||| | || ||||||| |||||||
Sbjct 952 GTACTTTTCTTACATTCC-TTCCT-TAAAATGATGTTTA-CTATTTGAACTT-AATCAAT 1007
Query 1016 AAAGATCGGTACCAAGACtttttttGATGTTTGCAGTAACACCAAACTGCATCGTGAAAA 1075
||||||| ||||||| | ||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1008 AAAGATCTGTACCAAAAAATTT---GATGTTTGCAGTAACACCAAACTAAATCATGAAAA 1064
Query 1076 CGTTTGGTAGATTGATTGATAAGTTTGAGGGTTAAGCACAATAAATGACCACACTTGTTT 1135
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1065 CGTTTGGTAGATTGATTGATAAGTTTGATAGTTAAGCACAATAAATGACCGCACTTGTTT 1124
Query 1136 T 1136
|
Sbjct 1125 T 1125
> Ahg920121 jgi|Araly1|920121|scaffold_101402.1
Length=567
Score = 643 bits (348), Expect = 0.0
Identities = 466/518 (90%), Gaps = 28/518 (5%)
Strand=Plus/Plus
Query 271 GTGTTTCTATTGCTTTTGTTTTTGTGACTAAATGGGATTTTTCCAATGTTGCTTCCATCT 330
||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 49 GTGTTTCTATTGCTTCTGTTTTTGTCACAAAATGGGATTGTTCCAATGTTGCTTCCATCT 108
Query 331 TCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCTACACTTT 390
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 109 TCAACAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCCACACTTT 168
Query 391 CAACTAAAGAGCAGAGTGATTCTTTTATGCGATCTTAC-T----TC-------C------ 432
|||||||||| ||||||||||| || |||||||||||| | || |
Sbjct 169 CAACTAAAGAACAGAGTGATTCATTCATGCGATCTTACTTCCACTCGATAAGTCTTTTTG 228
Query 433 -A-ATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTGAGATGGG 490
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 229 TAGATATGAGATGGAGTTTGGGAAACCTGCATTTGTACAAGTCACTGATGCTGAGATGGG 288
Query 491 ATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTG-TGCAAGCAACAGAAGGTGG 549
||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 289 ATTCGAGAAGATTGTTAAGATTGCTCACTCTCGTGGGGTGTTGCAAGCAACAGAAGGTGG 348
Query 550 CCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCATCAGAT 609
| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||
Sbjct 349 CGTCTAAGCTCAAGGTTGAGAGAAAGCGAATTGTGCAGGATACAGACATTTTCATAAGAT 408
Query 610 TTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGGCTATTG 669
|||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 409 TTGTCACATCTATACCCAACATTAACAAACATGATGCAAACACGCTGTGCCAGGCTATTG 468
Query 670 GTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAA--A-CA--CA-- 722
||||||| |||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 469 GTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAATTAGCAAACACA 528
Query 723 GATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTT 760
|||||||||||| |||||||||| ||||||||||||||
Sbjct 529 GATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTT 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5