BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12790.1 Length=1172 Score E Sequences producing significant alignments: (Bits) Value Ahg471432 jgi|Araly1|471432|fgenesh2_kg.1__1386__AT1G12790.1 1635 0.0 Ahg920121 jgi|Araly1|920121|scaffold_101402.1 643 0.0 > Ahg471432 jgi|Araly1|471432|fgenesh2_kg.1__1386__AT1G12790.1 Length=1125 Score = 1635 bits (885), Expect = 0.0 Identities = 1060/1141 (93%), Gaps = 26/1141 (2%) Strand=Plus/Plus Query 5 CATCCGCCAAGATTTTCGAATTTCTATAACTCTAGGAGGTTCGTCAATGGCGACGGCGGG 64 |||||||||| ||||||||||||| | |||||| ||||||||||| |||||||||||||| Sbjct 2 CATCCGCCAATATTTTCGAATTTCAAAAACTCTCGGAGGTTCGTCGATGGCGACGGCGGG 61 Query 65 ATCAAGCTACAGTGTCTCAACAGATCATCAAGTTTCGTCACCTCTCGTGAATCTAGGAAA 124 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 62 ATCAAGCTACAGTGTCTCAACAGATCATCAAGTTCCGTCATCTCTCGTGAATCTAGGAAA 121 Query 125 TGTTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGTTGAACAAGAACCTTCACTGAT 184 || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 122 TGGTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGATGAACAAGAACCTTCACTTAT 181 Query 185 CAATTTCATATCTGCGTTTCTTAGCGCAAACTCTTTCCGCCTTAACTTTGTCTCTATCCC 244 || |||||| ||||| ||||||| ||||||||||||||| || ||||||||||| ||||| Sbjct 182 CAGTTTCATTTCTGCCTTTCTTACCGCAAACTCTTTCCGGCTAAACTTTGTCTCAATCCC 241 Query 245 CCCTGATCTCATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTGACTAAATG 304 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 242 CCCGGATCTGATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTTACTAAATG 301 Query 305 GGATTTTTCCAATGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGC 364 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 GGATTGTTCCACTGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGC 361 Query 365 GCAACTTTATGTTGTTGCT-ACACTTTCAACTAAAGAGCAGAGTGATTCTTTTATGCGAT 423 ||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||| Sbjct 362 GCAACTTTATGTTGTTG-TCACACTTTCAACTAAAGCGCAGAGTGATTCTTTCATGCGAT 420 Query 424 CTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTG 483 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 CTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCATTGATGCTG 480 Query 484 AGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGA 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGA 540 Query 544 AGGTGGCCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCA 603 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AGGTGGCATCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCA 600 Query 604 TCAGATTTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGG 663 ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| | Sbjct 601 TCAGATTTGTCACATCCATACCCAACATTAACAAACATGATGCAAACACGCTATACCAAG 660 Query 664 CTATTGGTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAG 723 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTATTGGTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAG 720 Query 724 ATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTTTTTCCAAGATCCTGAGTTCTACC 783 ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 721 ATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTTCTTCCAAGATCCTGAGTTCTACC 780 Query 784 TCAGTCCCAAATTCAACTGACGACTGCAGAA-ATAGTTTTTCTAAAGGTACCACTCAAAG 842 |||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||| Sbjct 781 TCAGTCCCAAATTCAACTGATGACTGCAGAACAAAGTTTTTCTAAAGGTAACACTCAAAG 840 Query 843 ACTTTTCGTAGTCCTTTGCTATGGCTACAAGACTACAATACATACACCTATAGGAGCCAG 902 ||||||| |||||||||||||||||||||| |||| |||| | | |||||||||||| Sbjct 841 ACTTTTCCTAGTCCTTTGCTATGGCTACAA---TACA-TACA--C-C-TATAGGAGCCAG 892 Query 903 TACCGGGTAAGTAAAATGGCTCACTTTTTTATCTTT--GCTAGCTCTGTCTGAATA-CTA 959 |||||||||||||||||| ||||||| |||| |||| ||||||||||||||| || | | Sbjct 893 TACCGGGTAAGTAAAATGACTCACTTCTTTACCTTTTTGCTAGCTCTGTCTGACTATC-A 951 Query 960 GTACTTTTATTACAT-CCGTTCCTGTTAAA-G-TGTTTAGC-ATCTGAACTTTAATCAAT 1015 |||||||| |||||| || ||||| | ||| | |||||| | || ||||||| ||||||| Sbjct 952 GTACTTTTCTTACATTCC-TTCCT-TAAAATGATGTTTA-CTATTTGAACTT-AATCAAT 1007 Query 1016 AAAGATCGGTACCAAGACtttttttGATGTTTGCAGTAACACCAAACTGCATCGTGAAAA 1075 ||||||| ||||||| | ||| ||||||||||||||||||||||| ||| |||||| Sbjct 1008 AAAGATCTGTACCAAAAAATTT---GATGTTTGCAGTAACACCAAACTAAATCATGAAAA 1064 Query 1076 CGTTTGGTAGATTGATTGATAAGTTTGAGGGTTAAGCACAATAAATGACCACACTTGTTT 1135 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1065 CGTTTGGTAGATTGATTGATAAGTTTGATAGTTAAGCACAATAAATGACCGCACTTGTTT 1124 Query 1136 T 1136 | Sbjct 1125 T 1125 > Ahg920121 jgi|Araly1|920121|scaffold_101402.1 Length=567 Score = 643 bits (348), Expect = 0.0 Identities = 466/518 (90%), Gaps = 28/518 (5%) Strand=Plus/Plus Query 271 GTGTTTCTATTGCTTTTGTTTTTGTGACTAAATGGGATTTTTCCAATGTTGCTTCCATCT 330 ||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||| Sbjct 49 GTGTTTCTATTGCTTCTGTTTTTGTCACAAAATGGGATTGTTCCAATGTTGCTTCCATCT 108 Query 331 TCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCTACACTTT 390 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 109 TCAACAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCCACACTTT 168 Query 391 CAACTAAAGAGCAGAGTGATTCTTTTATGCGATCTTAC-T----TC-------C------ 432 |||||||||| ||||||||||| || |||||||||||| | || | Sbjct 169 CAACTAAAGAACAGAGTGATTCATTCATGCGATCTTACTTCCACTCGATAAGTCTTTTTG 228 Query 433 -A-ATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTGAGATGGG 490 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 229 TAGATATGAGATGGAGTTTGGGAAACCTGCATTTGTACAAGTCACTGATGCTGAGATGGG 288 Query 491 ATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTG-TGCAAGCAACAGAAGGTGG 549 ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 289 ATTCGAGAAGATTGTTAAGATTGCTCACTCTCGTGGGGTGTTGCAAGCAACAGAAGGTGG 348 Query 550 CCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCATCAGAT 609 | |||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||| Sbjct 349 CGTCTAAGCTCAAGGTTGAGAGAAAGCGAATTGTGCAGGATACAGACATTTTCATAAGAT 408 Query 610 TTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGGCTATTG 669 |||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||| Sbjct 409 TTGTCACATCTATACCCAACATTAACAAACATGATGCAAACACGCTGTGCCAGGCTATTG 468 Query 670 GTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAA--A-CA--CA-- 722 ||||||| |||||||||||||||||||||||||||||||||||||||| | || || Sbjct 469 GTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAATTAGCAAACACA 528 Query 723 GATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTT 760 |||||||||||| |||||||||| |||||||||||||| Sbjct 529 GATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTT 566 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43726985799 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5