BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12800.1
Length=2673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920143 jgi|Araly1|920143|scaffold_101424.1 3542 0.0
Ahg911052 jgi|Araly1|911052|Al_scaffold_0001_1306 1312 0.0
Ahg911029 jgi|Araly1|911029|Al_scaffold_0001_1283 867 0.0
Ahg920172 jgi|Araly1|920172|scaffold_101453.1 135 1e-30
> Ahg920143 jgi|Araly1|920143|scaffold_101424.1
Length=2347
Score = 3542 bits (1918), Expect = 0.0
Identities = 2215/2353 (94%), Gaps = 41/2353 (2%)
Strand=Plus/Plus
Query 123 TCTTTCGGCTTAATCGGAAAATGGACGTTCTCGCCTTATCCTCTTCCGCTTCCGCCGCCG 182
||||| |||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 1 TCTTTGGGCTTAATCGGAAAATGGACGTGCTTGCCTTATCCTCTTCCGCTT------CCG 54
Query 183 CACCCTCCGCTTCTCTCGCCGGAAAATTCCTGTCGTTTCCTTCTAGGGTTAGAGTGAGAA 242
|||||||||| |||||||| |||| || |||| |||||||||||| ||||||||
Sbjct 55 ------CCGCTTCTCTAGCCGGAAACTTCCCGTTGTTTTCTTCTAGGGTTAAAGTGAGAA 108
Query 243 GAAACCGAGAGAATTTGTTAGCTAAACAGAAGAAGTTTTTAGTTTCTGCTTCGAAAAGAG 302
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 109 GAAACCGGGAGAATTTATTAGCTAAACAGAAGAAGTTTTTAGTTTCAGCTTCGAAAAGAG 168
Query 303 AAGAGCCTAAGCTCAACGAATGGGATCAAATGGAGCTCAACTTTGGCCGTTTACTCGGCG 362
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 169 AAGAGCCTAAGCTCAATGAATGGGATCAAATGGAGCTCAACTTTGGCCGTTTACTAGGCG 228
Query 363 AAGACCCGAAATTGACTTTGGCTAAGATAGTAGCTAGAAAAGTGGATCCAGAAGCTTCTT 422
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 229 AAGACCCGAAATTGACTTTGGCTAAGATAGTGGCTAGAAAAGTGAATCCAGAAGCTTCTT 288
Query 423 TTATTGACATTGAGAAATCTTTCTACAAGAACAAAGGTAAAATTCCTGAAGTTGAAGAGA 482
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTATTGAAATTGAGAAATCTTTCTACAAGAACAAAGGTAAAATTCCTGAAGTTGAAGAGA 348
Query 483 TTCCATTGGATTGGTCAAAGGATAACAAGAAGAAATCTACTAGTTCACTGGATGGATTGA 542
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 349 TTCCATTGGATTGGTCAAACGATAAGAAGAAGAAATCTACTAGTTCACTGGATGGGTTGA 408
Query 543 AATTGGTAAAGCCTGTTCTGAAAGATGGAGTCAAGTTCGAAAGGCCAGTGATGAAGAAGC 602
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 409 AATTGGTAAAGCCTGTTCCGAAAGACGGAGTCAAGTTCGAAAAGCCAGTGATGAAGAAGC 468
Query 603 CAAGCCCTGTTTTGAAGAAGCCATTGGTGGAGGCTGTTGCTGCTCCAAAGGTGCAGAGAT 662
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 469 CAAGCCCTGTTTTGAAGAAGCCATTGGTGGAGGC---TGCTGCTCCAAAGGTGCAGAGAT 525
Query 663 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTATACTAGTAATGGTGATGATGAGG 722
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 526 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTATACTAGTAATAATGATGATGAGG 585
Query 723 AGTCTAAGTTGCGGTTGAAACCGAATCTGACATTGAAAATGAGAAATGAGAGGGAAAATG 782
|||||||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||
Sbjct 586 AGTCTAAGTTGCGGTTGAAACCGAATTTGACACTGAAAATGAGGAATGAGAGAGAAAATG 645
Query 783 AGAGGTTTAGTGATATGACATTGTTGAGAAAACCGGAACCAGTGAGCGTAGTTGCAGAAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 646 AGAGGTTTAGTGATATGACATTGTTGAGAAAACCGGAACCAGTGAGCGTAGATGCAAAAG 705
Query 843 AGG-AAG-AC--AAGCCT---CTT-T--CTGATGATTTAACTATGGAGGAAGGAGAACAG 892
||| ||| | ||| | || | |||||| ||||||||||||||||||| |||
Sbjct 706 AGGAAAGTTCTGAAG-ATAAGGTTATCCCTGATGGGTTAACTATGGAGGAAGGAGGACAA 764
Query 893 GAAGGTGGAACATATTCACAGTATACTCTTTTGGAGAAGCCAGAAGCGAGGCTC-CAGCC 951
|||| || |||||||||| |||||||||||||||||||||||||||| ||| || ||||
Sbjct 765 GAAGATGTAACATATTCAGAGTATACTCTTTTGGAGAAGCCAGAAGCAAGG-TCTAAGCC 823
Query 952 TGTCAATGTAGAAGAGGAAGTTGGAGATAGCGGAGGAGTGGAATCATCTGAGATAGTAAA 1011
|| || || |||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 824 TGAGAACATAAAAGAGGAAGTTGGAGATAGCGGAGCAGTGGAATCATCAGAGATAGAAAA 883
Query 1012 CAACTCAATTCAGAAGCCAGAAGCAAGGCCAGAGCTTGAGAACATAGAAAAGGAA-GTTG 1070
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||
Sbjct 884 CAACTCAATTCAGAAGCCAGAAGCAAGGCCAGAGCCTGAGAACGTAGAAAA-GAATGTTG 942
Query 1071 CAGATAGCGGAGTTTTGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGC 1130
||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 943 GAGATAGCGGAGCTATGGAATCATCTGAGATAGAAAATAACTCAATTCCAACTGAAATGC 1002
Query 1131 AGCTCAA-TAGCGAGATGT-C-C----T-CT--GAGGAGAAAACTATTAACAGTGATCCA 1180
|||| || | || |||||| | | | || ||||||| ||| |||||||||||||||
Sbjct 1003 AGCTTAACT-GCAAGATGTCCTCGGGATCCTCCGAGGAGAGAACCATTAACAGTGATCCA 1061
Query 1181 CTCGAGAGAATTCCTTCGAAACCAATTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGG 1240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1062 CTCGAGAGAATTCCTTCGAAACCAATTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGG 1121
Query 1241 AAACCACAAAGATTAGACCCGTCTTCCGCTGAGCCATCAGTTCCGAACATAGGAAAACCG 1300
||||||||||||||||||||||||||||| |||||||||||| | |||| |||| |||||
Sbjct 1122 AAACCACAAAGATTAGACCCGTCTTCCGCGGAGCCATCAGTTTCAAACAGAGGACAACCG 1181
Query 1301 TCAGTCGTGAACCATGAAGGCCGTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGA 1360
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TTAATCGTGAACCATGAAGGTCGTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGA 1241
Query 1361 TCGTCCTTGGAGGAAAATGATTGGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGA 1420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1242 TCGTCCTTGGAGGAAAATGATTGGAATGAGGCAGAGTCTCTAGTTAAAACAGAATTACGA 1301
Query 1421 GCAGATGTTGAGCTAATAAGTTCAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GCAGATGTTGAGCTAATAAGTTCAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTG 1361
Query 1481 ATTGGATTTTTACCCTACCGGAACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCA 1540
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1362 ATCGGATTTTTACCCTACCGGAACCTAGCAGCAAAATGGAAATTTCTCGCATTTGAATCA 1421
Query 1541 TGGTTAAGAAGAAAAGGTGTAGATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGA 1600
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1422 TGGTTAAGAAGAAAAGGTGTAGATCCATCACTGTATCGACAAAACCTTGGGGTAATCGGA 1481
Query 1601 GGTCAAGATGTCACGAGTAAATCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCT 1660
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1482 GGTCAAGATGTCACAAGTAAAGCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCT 1541
Query 1661 ACAACGATCAACGGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATAT 1720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 ACATCGATCAACGGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATAT 1601
Query 1721 GACAGAGAGAAGCAGAAGTTCCTGTCATCTTTTGTTGGTCAGAAAATCAAAGTGAATGTT 1780
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1602 GACAGAGAAAAGCAGAAGTTCCTGTCATCTTTTGTTGGCCAGAAAATCAAAGTGAATGTT 1661
Query 1781 GTTATGGCAAATCGAAATTCAAGGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAA 1840
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1662 GTTATGGCTAATCGAAACTCAAGGAAGCTTATATTTTCGATGAGGCCGAGAGAAAATGAA 1721
Query 1841 GAGGAAGTTGAGAAAAAACGAACTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAA 1900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1722 GAGGAAGTTGAGAAAAAACGAAATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAA 1781
Query 1901 TGCTGCATCAAGAAAATTACCTATTTTGGTATTTTCTGTGAGCTAGAAGGTGTCCCTGCA 1960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1782 TGCTGCATCAAGAAAATTACCTATTTTGGTATTTTTTGTGAGCTAGAAGGTGTCCCTGCA 1841
Query 1961 TTGGTTCACCAGTCAGAAGTTTCATGGGATGCAACTTTAGACCCTGCTTCATATTTCAAG 2020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 TTGGTTCACCAGTCAGAAGTTTCATGGGATGCAACTTTAGACCCTGCTTCATATTTCAAG 1901
Query 2021 ATTGGTCAGATTGTGGAAGCGAAAGTGCACCAGCTAGATTTTGCTCTTGAACGTATCTTC 2080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 ATTGGTCAGATTGTGGAAGCGAAAGTGCACCAGCTAGATTTTGCTCTTGAACGTATCTTC 1961
Query 2081 TTGTCATTAAAAGAAATTACGCCTGATCCTCTTACTGAAGCTTTAGAATCTGTAGTTGGT 2140
||||| |||||||||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1962 TTGTCGCTAAAAGAAATCACGCCTGATCCTCTAACCGAAGCCTTAGAATCTGTAGTTGGT 2021
Query 2141 GGTGATAATGATCAGTTGGGGGGACGATTACAAGCAGCAGAGCTCGACGCTGAGTGGCCT 2200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 GGTGATAATGATCAGTTGGGGGGACGATTACAAGCAGCAGAGCTCGACGCTGAGTGGCCT 2081
Query 2201 GACGTGGAATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATCCAATCAGTCTCAAAA 2260
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2082 GACGTGGAATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATTCAATCAGTTTCAAAA 2141
Query 2261 AGTCGTTTCTTCTTGAGTCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATG 2320
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 AGTCGTTTCTTCTTGAGCCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATG 2201
Query 2321 TTTGAGAACCAATACAAACTGCTTGCTCGAGCTGGAAACAGAGTACAAGAGCTTATTGTT 2380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 TTTGAGAACCAATACAAACTGCTTGCTCGAGCTGGAAACAGAGTACAAGAGCTTATTGTT 2261
Query 2381 GAAGCATCCTTGAGCAAAGAAGAGATGAAATCTACAATCATGTCTTGCACCAACAGAGTA 2440
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 GAAGCATCGTTGAGCAAAGAAGAGATGAAATCTACAATCATGTCTTGCACCAACAGAGTA 2321
Query 2441 GAATGAGAATATT 2453
|||||||||||||
Sbjct 2322 GAATGAGAATATT 2334
> Ahg911052 jgi|Araly1|911052|Al_scaffold_0001_1306
Length=846
Score = 1312 bits (710), Expect = 0.0
Identities = 813/860 (95%), Gaps = 18/860 (2%)
Strand=Plus/Plus
Query 1086 TGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGCAGCTCAATAGCGAGA 1145
|||||||||| |||||||||||||| ||||||||||| || || | || | || ||
Sbjct 2 TGGAATCATCTGAGATAGAAAATAACTCAATTCCAAC-GAGAT---G-TC-CT--CGGGA 53
Query 1146 TGTCCTCTGAGGAGAAAACTATTAACAGTGATCCACTCGAGAGAATTCCTTCGAAACCAA 1205
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 54 --TCCTCTGAGGAGAAAACCGTTAACAGTGATCCACTCGAGAGAATTCCTTCGAAACCAA 111
Query 1206 -TTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGGAAACCACAAAGATTAGACCCGTCT 1264
|||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 112 TTTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGGAAACCAC--A-ATTAGACCCGTCT 168
Query 1265 TCCGCT-GAGCCATCAGTTCCGAA-CATAGGAAAACCGTCAGTCGTGAACCATGAAGGCC 1322
|||| | |||||||||||| | || || |||| |||||| | |||||||| |||||||||
Sbjct 169 TCCG-TGGAGCCATCAGTTTC-AACCAAAGGACAACCGTTAATCGTGAACTATGAAGGCC 226
Query 1323 GTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGATCGTCCTTGGAGGAAAATGATT 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGATCGTCCTTGGAGGAAAATGATT 286
Query 1383 GGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAGCTAATAAGTT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAGCTAATAAGTT 346
Query 1443 CAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATTGGATTTTTACCCTACCGGA 1502
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 347 CAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATCGGATTTTTACCCTACCGGA 406
Query 1503 ACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCATGGTTAAGAAGAAAAGGTGTAG 1562
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ACCTAGCAGCAAAATGGAAATTTCTCGCATTTGAATCATGGTTAAGAAGAAAAGGTGTAG 466
Query 1563 ATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTCACGAGTAAAT 1622
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 467 ATCCATCACTGTATCGACAAAACCTTGGGGTAATCGGAGGTCAAGATGTCACAAGTAAAG 526
Query 1623 CTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACAACGATCAACGGAGAAGTTT 1682
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 527 CTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACATCGATCAACGGAGAAGTTT 586
Query 1683 CTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAGAAGCAGAAGTTCC 1742
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 587 CTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAAAAGCAGAAGTTCC 646
Query 1743 TGTCATCTTTTGTTGGTCAGAAAATCAAAGTGAATGTTGTTATGGCAAATCGAAATTCAA 1802
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 647 TGTCATCTTTTGTTGGCCAGAAAATCAAAGTGAATGTTGTTATGGCTAATCGAAACTCAA 706
Query 1803 GGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGAA 1862
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGAAGCTTATATTTTCGATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGAA 766
Query 1863 CTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACCT 1922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 ATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACCT 826
Query 1923 ATTTTGGTATTTTCTGTGAG 1942
||||||||||||| ||||||
Sbjct 827 ATTTTGGTATTTTTTGTGAG 846
> Ahg911029 jgi|Araly1|911029|Al_scaffold_0001_1283
Length=1983
Score = 867 bits (469), Expect = 0.0
Identities = 665/755 (88%), Gaps = 31/755 (4%)
Strand=Plus/Plus
Query 554 CCTGTT-CTGAAAGATGGAGTCAA-GTTCGAAAGGCCAGTGATGAAGAAGCCAAGCCCTG 611
|||||| || ||||| ||||| || || |||| |||||||||||| ||||||| |||||
Sbjct 328 CCTGTTCCT-AAAGACGGAGTTAACCTT-GAAAAGCCAGTGATGAAAAAGCCAAACCCTG 385
Query 612 TTTTGAAGAAGCCATTGGTGG-AG--GC---T---GTTGCTGCTCCAAAGGTGCAGAGAT 662
|||||||||||||||||| || | || | |||||||||||||||||||||||||
Sbjct 386 TTTTGAAGAAGCCATTGGAGGCTGCTGCTGTTCCAGTTGCTGCTCCAAAGGTGCAGAGAT 445
Query 663 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTATACTAGTAATGGTGATGATGAGG 722
||||||||||||||||||||||||||||||||||||| | ||||||| | || ||||
Sbjct 446 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTACGCGAGTAATGACAACGACGAGG 505
Query 723 AGTCTAAGTTGCGGTTGAAACCGAATCTGACATTGAAAATGAGAAATGAGAGGGAAAATG 782
|||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 506 AGTCTATGTTGCGGTTGAAACCGAATTTGACACTGAAAATGAGGAATGAGAGGGAAAATG 565
Query 783 AGAGGTTTAGTGATATGACATTGTTGAGAAAACCGGAACCAGTGAGCGTAGTTG-CAGAA 841
||||||||||||||||||||||||||||||||| ||| ||||||||||||| | | |||
Sbjct 566 AGAGGTTTAGTGATATGACATTGTTGAGAAAACGGGAGCCAGTGAGCGTAGAAGAC-GAA 624
Query 842 GA-G--GAAGACAAGCCTCTTTCTGATGATTTAACTATGGAGGAAGGAGAACAGGAAGGT 898
| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 625 AATGCTGAAGATAAGCCTCTTTCTGATGATTTAACTATGGAGGAAGGAGAACAAGAAGAT 684
Query 899 GGAACATATTCACAGTATACTCTTTTGGAGAAGCCAGAAGCGAGGCTCCAGCCTGTCAAT 958
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 685 GGAACATATTCACAGTATACTCTTTTGGAGAAGCCAGAAGCGAGGCTCGAGCCTATCAAT 744
Query 959 GTAGAAGAGGAAGTTGGAGATAGCGGAGGAGTGGAATCATCTGAGATAGTAAACAACTCA 1018
|||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 745 GTAGAAGAGGTAGTTGGAGATAGCGGAGCAGTGGAATCATCAGAGATAGAAAACAACTCA 804
Query 1019 ATTCAGAAGCCAGAAGCAAGGC-CAGAGCTTGAGAACATAGAAAAGGAAGTTGCAGATAG 1077
|||||||||||||||||||||| | |||| || ||| ||||| ||||||||| ||||||
Sbjct 805 ATTCAGAAGCCAGAAGCAAGGCTC-GAGCCTGTGAATGTAGAAGAGGAAGTTGGAGATAG 863
Query 1078 CGGAGTTTTGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGCAGCTCAA 1137
||||| | |||||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct 864 CGGAGCTGCAGAATCATCAGAGATAGAAAATAACTCTATTCCAACTGAAATGCAGCTTAA 923
Query 1138 TAGCGAGA--T----G---TCCTCTGAGGAGAAAACTATTAACAGTGA-TCCACTCGAGA 1187
| | ||| | | ||||||||||||||||| ||||||||||| || ||| ||||
Sbjct 924 AATCCAGAGGTCCTCGGGCTCCTCTGAGGAGAAAACCATTAACAGTGACTC-ACTTGAGA 982
Query 1188 GAATTCCTTCGAAACCAATTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGGAAACCAC 1247
| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 983 GGATTCCTTCGAAACCAGTTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGGAAACCAC 1042
Query 1248 AAAGATTAGACCCGTCTTCCGCTGAGCCATCAGTT 1282
|||| |||||||||||||| || ||||||||||||
Sbjct 1043 AAAGGTTAGACCCGTCTTCTGCCGAGCCATCAGTT 1077
Score = 632 bits (342), Expect = 4e-180
Identities = 374/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 1373 GAAAATGATTGGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAG 1432
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1084 GAAAATGATTGGAATAAGGCAGAGTCTCTAGTTAAGACGGAATTACGGGCAGATGTTGAG 1143
Query 1433 CTAATAAGTTCAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATTGGATTTTTA 1492
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1144 CTAATAAGCTCGAGCACTAGAGGCTTTGCTGTTTCCTATGGATCTTTGATCGGATTTTTA 1203
Query 1493 CCCTACCGGAACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCATGGTTAAGAAGA 1552
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1204 CCCTACCGGAACCTTGCAGCAAAATGGAAATTTCTCGCATTTGAATCATGGTTACGAAGA 1263
Query 1553 AAAGGTGTAGATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTC 1612
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AAAGGTGTAGATCCATCATTGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTC 1323
Query 1613 ACGAGTAAATCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACAACGATCAAC 1672
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1324 ACGAGTAAAGCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGACGCTACAACGATCAAC 1383
Query 1673 GGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAGAAG 1732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1384 GGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAAAAG 1443
Query 1733 CAGAAGTTCCTGTCATCTTTTGTTGGTCAG 1762
||||||||||||||||||| |||||| |||
Sbjct 1444 CAGAAGTTCCTGTCATCTTATGTTGGCCAG 1473
Score = 562 bits (304), Expect = 5e-159
Identities = 340/358 (95%), Gaps = 0/358 (0%)
Strand=Plus/Plus
Query 2028 AGATTGTGGAAGCGAAAGTGCACCAGCTAGATTTTGCTCTTGAACGTATCTTCTTGTCAT 2087
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1610 AGATTGTGGAAGCGAAAGTGCACCAGCTGGATTTTGCTCTTGAACGTATCTTCTTGTCGC 1669
Query 2088 TAAAAGAAATTACGCCTGATCCTCTTACTGAAGCTTTAGAATCTGTAGTTGGTGGTGATA 2147
|||||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 1670 TAAAAGAAATCACGCCTGATCCACTAACCGAAGCCTTAGAATCTGTAGTTGGTGGTGATA 1729
Query 2148 ATGATCAGTTGGGGGGACGATTACAAGCAGCAGAGCTCGACGCTGAGTGGCCTGACGTGG 2207
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1730 ATGATCAGTTCGGGGCACGGTTACAAGCAGCAGAGCTCGACGCTGAGTGGCCTGATGTGG 1789
Query 2208 AATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATCCAATCAGTCTCAAAAAGTCGTT 2267
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1790 AATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATTCAATCAGTTTCAAAAAGTCGTT 1849
Query 2268 TCTTCTTGAGTCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATGTTTGAGA 2327
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 TCTTCTTGAGCCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATGTTTGAGA 1909
Query 2328 ACCAATACAAACTGCTTGCTCGAGCTGGAAACAGAGTACAAGAGCTTATTGTTGAAGC 2385
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 1910 ACCAATACAAACTGCTTGCTCGAGCTGGACATAGAGTACAAGAGCTTATTGTTCAAGC 1967
Score = 392 bits (212), Expect = 7e-108
Identities = 290/326 (89%), Gaps = 11/326 (3%)
Strand=Plus/Plus
Query 143 ATGGACGTTCTCGCCTTATCCTCTTCCGCTTCCGCCGCCGC-A------C-CCTCCG-CT 193
|||||||||| |||||||||||||||||||||||||||||| | | ||| || ||
Sbjct 1 ATGGACGTTCACGCCTTATCCTCTTCCGCTTCCGCCGCCGCAACCGCCGCACCTGCGTCT 60
Query 194 TCTCTCGCCGGAAAATTCCTGTCGTTTCCTTCTAGGGTTAGAGTGAGAAGAAACCGA-GA 252
| | |||||||||| |||| || |||||||||||| |||||| |||||||||| | | ||
Sbjct 61 TATATCGCCGGAAACTTCCCGTTGTTTCCTTCTAGTGTTAGATTGAGAAGAAA-CAAGGA 119
Query 253 GAATTTGTTAGCTAAACAGAAGAAGTTTTTAGTTTCTGCTTCGAAAAGAGAAGAGCCTAA 312
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 120 TAATTTATTAGCTAAACAGAAGAAATTTGTAGTTTCTGCTTCGAAAAGAGAAGAGCCTAA 179
Query 313 GCTCAACGAATGGGATCAAATGGAGCTCAACTTTGGCCGTTTACTCGGCGAAGACCCGAA 372
|||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct 180 GCTCAACGAATGGGATCAAATGGAGCTCAAGTTCGGACGTTTACTCGGAGAGGACCCGAA 239
Query 373 ATTGACTTTGGCTAAGATAGTAGCTAGAAAAGTGGATCCAGAAGCTTCTTTTATTGACAT 432
||||||||||||||||||||| | |||||||||| |||||||||||||||| |||| ||
Sbjct 240 ATTGACTTTGGCTAAGATAGTGGGTAGAAAAGTGAATCCAGAAGCTTCTTTCGTTGAAAT 299
Query 433 TGAGAAATCTTTCTACAAGAACAAAG 458
||||||||||||||||||||||||||
Sbjct 300 TGAGAAATCTTTCTACAAGAACAAAG 325
Score = 226 bits (122), Expect = 7e-58
Identities = 135/141 (96%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 1802 AGGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGA 1861
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AGGAAGCTTATA-TTTCGATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGA 1530
Query 1862 ACTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACC 1921
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1531 AATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAGATTACC 1590
Query 1922 TATTTTGGTATTTTCTGTGAG 1942
||||| ||||| |||||||||
Sbjct 1591 TATTTCGGTATATTCTGTGAG 1611
Score = 117 bits (63), Expect = 4e-25
Identities = 85/96 (89%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 927 AGAAGCCAGAAGCGAGGCTCCAGCCTGTCAATGTAGAAGAGGAAGTTGGAGATAGCGGAG 986
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 809 AGAAGCCAGAAGCAAGGCTCGAGCCTGTGAATGTAGAAGAGGAAGTTGGAGATAGCGGAG 868
Query 987 GAGTGGAATCATCTGAGATAGTAAACAACTCAATTC 1022
| |||||||| ||||||| ||| ||||| ||||
Sbjct 869 CTGCAGAATCATCAGAGATAGAAAATAACTCTATTC 904
> Ahg920172 jgi|Araly1|920172|scaffold_101453.1
Length=254
Score = 135 bits (73), Expect = 1e-30
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 2101 GCCTGATCCTCTTACTGAAGCTTTAGAATCTGTAGTTGGTGGTGATAATGATCAGTTGGG 2160
||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 27 GCCTGATCCACTAACCGAAGCCTTAGAATCTGTAGTTGGTGGTGATAATGATCAGTTCGG 86
Query 2161 GGGACGATTACAAGCAGCAGAGCTCGACGCTGAG 2194
|||||| ||||||| |||||||||||||||||||
Sbjct 87 GGGACGGTTACAAGTAGCAGAGCTCGACGCTGAG 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100824878515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5