BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12805.1

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471434 jgi|Araly1|471434|fgenesh2_kg.1__1388__AT1G12805.1         436    6e-122


> Ahg471434 jgi|Araly1|471434|fgenesh2_kg.1__1388__AT1G12805.1
Length=388

 Score =  436 bits (236),  Expect = 6e-122
 Identities = 326/367 (89%), Gaps = 15/367 (4%)
 Strand=Plus/Plus

Query  124  TTTA-TCAAATGGATGTCTTTATATCGGAAGAGTATATCAACCGCCGGAGATTGGAGAAA  182
            |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  32   TTTATTCAAATGGATGTCTTTATATCGGAAGAGTATGTCAACCGCCGGAGAATGGAGAAA  91

Query  183  AAAGCTGCCACCGTTGCCGGAAAAAGCATGAGGTTTGGCTCAGCTTCAAGCAAGACACCA  242
            ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct  92   AAAGCTGCCGCCGTTGCCGGAAAAAGCATGAGGTTAGGCTCTGCTTCAAGCAAGAGACCA  151

Query  243  GAGAAGAGAAATAGTTACCCTCGGATATCGGAATCTCCGCCAGATAATGAGTTCCGGGTC  302
            ||||||||||||||||| ||| | || |||||||||||||| ||||||||||||||||||
Sbjct  152  GAGAAGAGAAATAGTTATCCTTGTATGTCGGAATCTCCGCCGGATAATGAGTTCCGGGTC  211

Query  303  ACTGGCGGGGGTGTTTATGATAGCTTTGCCTTTGTGTTCCACTGCTTCTCGCCGTaaaaa  362
             | ||||||||||||||||| ||   |   |||||||||||||||||||||||||  |||
Sbjct  212  TCCGGCGGGGGTGTTTATGAGAG---T---TTTGTGTTCCACTGCTTCTCGCCGT--AAA  263

Query  363  aaaCAAAGCGTTTGTGTTTAGCGATCAAAATGCATGCGCAATAGTATATGCATGGGAACT  422
            |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||   |
Sbjct  264  AAACAAAGCGTTTGTGTTTAGCGATCAAAATGCATGCGCAGTAGTGTATGCATGGGCTTT  323

Query  423  T-TAT-T-AGTTGTAGCTCTCGT-TTTTCTAACATTTACTTGAAAAAATAATTCTTCTTA  478
            | ||| | |||||| |||   |  ||||| ||||||||||| ||||||||||| ||||||
Sbjct  324  TATATATTAGTTGTGGCTAAAGGGTTTTC-AACATTTACTT-AAAAAATAATTTTTCTTA  381

Query  479  ACACTGT  485
            ||| |||
Sbjct  382  ACATTGT  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19039638911


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5