BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12810.2
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471435 jgi|Araly1|471435|fgenesh2_kg.1__1389__AT1G12810.1 510 5e-144
> Ahg471435 jgi|Araly1|471435|fgenesh2_kg.1__1389__AT1G12810.1
Length=710
Score = 510 bits (276), Expect = 5e-144
Identities = 333/359 (93%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 68 aaaaaaaaaaTGAGCTACGACAGAGTCCCACCGGAATCGTATCCTCCTCCAGGATACCAA 127
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 4 AAAAAAAAAATGAGCTACGACAAAGTCCCACCGGAATCATATCCTCCTCCAGGATACCAA 63
Query 128 TCTCACTATCCACCTCCGGGTTATCCATCAGCACCGCCACCGCCGGGATATCCTTCTCCT 187
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 64 TCTCACTATCCACCTCCGGGTTATCCATCAGCACCGCCGCCGCCGGGATATCCTTCTCCT 123
Query 188 CCGTCGCATCACGAAGGATATCCTCCACCTCAGCCTTACGGAGGATATC--C---A-CCA 241
|| ||||||||||||||||||||||| ||||||||| |||||||||||| | | |||
Sbjct 124 CCATCGCATCACGAAGGATATCCTCCGCCTCAGCCTCACGGAGGATATCAACCGTATCCA 183
Query 242 CC---GTCTTCACGTCCTTACGAAGGCGGTTATCAAGGCTACTTCGCCGGAGGAGGTTAT 298
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 CCACCGTCTTCACGTCCTTACGAAGGCGGTTATCAAGGTTACTTCGCCGGAGGAGGTTAT 243
Query 299 CCTCATCAGCATCACGGACCACCACCTCCTCCTCCGCCGCAAAATTACGACCACTGCCAT 358
|||||||| |||||||||||||| |||||||||||||||||||||||| | ||||| |||
Sbjct 244 CCTCATCAACATCACGGACCACCGCCTCCTCCTCCGCCGCAAAATTACAATCACTGTCAT 303
Query 359 CATGATCATCACCATTACCAAGATTCTGACTCTGGTTGCTTCTCTTTCATCCGTGGCTG 417
|| |||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 304 CACGATCATTACCATAACCAAGGTTCTGACTCTGGTTGCTTCTCTTTCGTCCGTGGCTG 362
Score = 405 bits (219), Expect = 3e-112
Identities = 307/346 (89%), Gaps = 19/346 (5%)
Strand=Plus/Plus
Query 517 TCTTGCTGCTCTTTGCTGTTGCTGTTTGTTGGAGGAATGCTGCTTCTGAGAATGCCGCCA 576
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 363 TCTTGCTGCTCTCTGCTGTTGCTGTTTGTTGGAGGAATGCTGCTTCTAAGAATG-C-CC- 419
Query 577 GTCTCTGTGGATCTCGTCGTTTACTGTCAGCATTATGTGTCTAATCGAAGACATATGCCA 636
||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTCTCTGCGGATCTTGTCATTTACTGTCAGCATTATGTGTCTAATCGAAGACATATGCCA 479
Query 637 TAACACTCTATGTCTTGTGTACTATCG-T-GTGTC-AAT-GTCTGTTAATGTTTACCTCT 692
|||| ||||||||||| ||||||||| | |||| ||| ||||||| ||||| ||||||
Sbjct 480 TAACTCTCTATGTCTTATGTACTATCTATCGTGTTTAATTGTCTGTTGATGTTCACCTCT 539
Query 693 TTGTTTGAGAGTGCACTCATCCAGAGCATGGATTAGACAAGTAGGTTTCTTGTGGATGT- 751
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 TTGTTTGAGAGTGCACTCATCCAGAGCATGGATTTGACAAGTAGGTTTCTTGTGGATGTT 599
Query 752 CAT-TGTAATTT----GTATTATTTGGAAAACGTGATTGGTATTTTACCTAAATTT-ATG 805
| | |||||||| |||||||||||||||| || ||| |||| |||| |||||| | |
Sbjct 600 C-TCTGTAATTTTTATGTATTATTTGGAAAACATGTTTGTTATTCTACCCAAATTTTA-G 657
Query 806 TT-TT-CAATGGCTGAATTACGGTGATAATAAAATGCGACATTTGT 849
|| || ||| |||||||||| ||| |||||||||||| ||||||||
Sbjct 658 TTCTTTCAAAGGCTGAATTATGGT-ATAATAAAATGCAACATTTGT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5