BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12830.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471437 jgi|Araly1|471437|fgenesh2_kg.1__1391__AT1G12830.1 1134 0.0
> Ahg471437 jgi|Araly1|471437|fgenesh2_kg.1__1391__AT1G12830.1
Length=861
Score = 1134 bits (614), Expect = 0.0
Identities = 800/885 (90%), Gaps = 32/885 (4%)
Strand=Plus/Plus
Query 44 TCAAAGCCCTAACTCTGAATCGTCGTCCTCAAACCAAAATCGCG-AGTCTCTGAAGTAAG 102
|||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||
Sbjct 1 TCAAAGCCCTAACTCTGAATCGTCTTCCTCAAACC--AATCGCGAATTCTCTGAAGTAAG 58
Query 103 AAGATTGATTCATCTATGGCGGATGTTGAGAATCAACAGGATTCTTCGTTTCCTGTGAAG 162
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 59 AAGATTGATTCATCTATGGCGGATGTTGAGAATCAACCGGATTCTTCGTTTCCGGTGAAG 118
Query 163 CGAAAATCGGATCTGTTTTGTCAAGACCAGGATAATGTGACAAACAAGGCTCAGAAGCTT 222
|| ||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 119 CGGAAATCTGATCTGTTTTGCCAAGAGCAGGATAATGTGGCAAACAAGGCTCAGAAGCTT 178
Query 223 AATCCTTCATTGAATTCTGCTGATTCTGAGTCCAAAGACGGAGAAACTAATGGAAGTGGC 282
|||||||||| |||||||| ||| |||||||||||||||||||||| |||||||| |||
Sbjct 179 AATCCTTCATCGAATTCTGTTGAGTCTGAGTCCAAAGACGGAGAAATTAATGGAACTGG- 237
Query 283 CAAATCGAGAATCTGAATTCTTCCACCGAGGAAACGATTGGAGCAGAATCATCGGTTTTA 342
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 238 C--GTCGAGAATCTGAATTCTTCCACCGAGGAAAAGATTGGGGCAGAATCATCGGTTTTA 295
Query 343 TCGGAGAAAGCAGCTGAAGAGGTTGAGAGTGGCGTAATCGGCGATGTTGGAGCTg-a-a- 399
|||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||| | |
Sbjct 296 TCGGAGAAAGCAGCTGAAAAGGTTGAGAATGGCGTAATCGGCGATCTTGCAGCTGAAGAT 355
Query 400 gaggagcaagaggatgaagaagatgaagaggaagacgacgaggaagaagaagaagaagaa 459
||||||||||| |||| | ||||||||| || || || || ||||| || |||||||||
Sbjct 356 GAGGAGCAAGAAGATG--G-AGATGAAGAAGATGAAGAGGAAGAAGACGAGGAAGAAGAA 412
Query 460 gaagTTGTTGATAGGAAAGGTAAAGGGATTTCGCGAGAGGATAAGGGAAAGGgaaaaatg 519
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 413 GAAGAGGTTGATAGGAAAGGTAAAGGGATTTCTCGAGAGGACAAGGGAAAGGGAAAAATG 472
Query 520 atcgaagtggaagaaagtgatgatgaagacgacagtgatgatgatgaagatgacgaaggt 579
|||||||| || ||||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 473 ATCGAAGTTGATGAAAGTGATGACGAAGACGACA--G-TGATGATGAAGATGACGAAGGT 529
Query 580 tttgatgaagacgacgaaAGCGATTTCTCCGATGATCCTTTGGCTGAGGTTGATTTGGAT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTTGATGAAGACGACGAAAGCGATTTCTCCGATGATCCTTTGGCTGAGGTTGATTTGGAT 589
Query 640 AATATCCTTCCGTCGAGGACTAGGAGAAGATCGAGCCAGCCTGGAGTTTTCATCCCCAAT 699
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 590 AATATCCTCCCGTCGAGGACTAGGAGACGATCGAGCCAGCCTGGAGTTTTCATCTCCAAT 649
Query 700 GAATTCAGTAACCGCCATGTCAACGACGAGGATGATGAAAGCAGTGAT-AGTGATGCTTA 758
||| |||||||||| ||||||||||||||||||||| ||||||||| | | | | |
Sbjct 650 GAAATCAGTAACCGTGGTGTCAACGACGAGGATGATGATAGCAGTGATGA-T-A-G-T-- 703
Query 759 AAGACCTTAGCTTGTAAGAGGTTAGTGATTAAGATAACTGA-GAA-TTAGTTCCTTTGAT 816
|| | |||| ||||||||||||||||||| || | | ||| ||||||||||||||
Sbjct 704 --GA--T--GCTTAAAAGAGGTTAGTGATTAAGAAAAATCAAGAAATTAGTTCCTTTGAT 757
Query 817 TCTAAAAGAGAGTTTGTCACTGTTCAGTGATTATTAGTTATATCTATTGATGTTTCAAAC 876
|||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 758 TCTAAA-GAGAGTTTGTCTCTGTTCAGTGATTATTCGTTATATCTAATGATGTTTCAAAC 816
Query 877 GCTTGGACCAAAGTGGGCT-TTATATATATCTATGATGTTCTTGC 920
||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 817 GCTTGGACCAAAGTGGGTTATTATATATATCTATGATGTTCTTGC 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5