BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12840.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471438 jgi|Araly1|471438|fgenesh2_kg.1__1392__AT1G12840.1 2370 0.0
> Ahg471438 jgi|Araly1|471438|fgenesh2_kg.1__1392__AT1G12840.1
Length=1491
Score = 2370 bits (1283), Expect = 0.0
Identities = 1431/1499 (95%), Gaps = 23/1499 (2%)
Strand=Plus/Plus
Query 7 agagaagaagatttgattgaagtacagatccatcggagaagaagacagagagattgaaga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAAGAAGATTTGATTGAAGTACAGATCCATCGGAGAAGAAGACAGAGAGATTGAAGA 60
Query 67 tCAATGACTTCGAGATATTGGGTGGTGTCTCTTCCAGTGAAAGACTCTGCTTCTTCGTTA 126
|||||||||||||| || ||||| || ||||||||||||||||||||||||||| |||||
Sbjct 61 TCAATGACTTCGAGGTACTGGGTTGTTTCTCTTCCAGTGAAAGACTCTGCTTCTACGTTA 120
Query 127 TGGAATCGATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGTTT 186
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TGGAATCGATTACAGGAGCAGATCTCCAAGCATTCCTTTGATACTCCAGTTTATCGGTTT 180
Query 187 AACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTG 246
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AACATTCCTAATCTTCGTGTTGGAACTTTAGATTCTCTACTCGCTCTCGGCGATGATCTG 240
Query 247 CTTAAGTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAAGAA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTAAGTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAAGAA 300
Query 307 TTGGAGAGGATTTCTGGTGTTGAGAGCAACGCTCTTACAGTTGATGGAGTTCCTGTTGAT 366
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTGGAGAGGATTTCTGGTGTTGAGAGCAACGCTCTAACAGTTGATGGAGTTCCTGTTGAT 360
Query 367 TCTTATCTCACCAGGTTTGTGTGGGATGAAGCTAAGTACCCAACAATGTCACCTCTGAAG 426
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 TCTTATCTCACCAGGTTTGTGTGGGATGAAGCTAAGTACCCAACGATGTCACCTCTGAAG 420
Query 427 GAGGTTGTGGACAATATTCAGTCTCAGGTTGCAAAAATTGAGGATGATCTCAAGGTTCGT 486
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAGGTTGTTGACAATATTCAGTCTCAGGTTGCAAAGATTGAGGATGATCTCAAGGTTCGT 480
Query 487 GTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGA 540
Query 547 AGCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGAGTCCGAA 606
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 541 AGCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGCGTCAGAA 600
Query 607 CATCTCGTAACTCTCCTTGCAGTTGTTCCGAAGTATTCCCAAAAAGACTGGCTAGCATGT 666
||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 601 CATCTTGTGACTCTCCTTGCAGTTGTTCCAAAGTATTCCCAAAAAGACTGGCTGGCATGT 660
Query 667 TATGAGACTTTGACCGATTATGTGGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAAT 726
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 TATGAGACATTGACCGAATATGTGGTTCCTAGGTCCTCGAAGAAGTTGTTTGAGGATAAT 720
Query 727 GAGTATGCCCTTTACACCGTCACTCTCTTTACTCGTGTCGCAGATAATTTCAGGATT-GC 785
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 721 GAGTATGCTCTTTACACCGTCACTCTCTTTACTCGTGTTGCAGATAATTTCAGGATTAG- 779
Query 786 TGCTCGTGAGAAAGGATTCCAAGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGAC 845
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TGCTCGTGAGAAGGGGTTCCAAGTCCGTGATTTTGAACATAGTGTTGAAGCACAAGAGAC 839
Query 846 TCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTT 905
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCGTAAACAAGAGCTAGAAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTT 899
Query 906 GCAGTGGTGCTACACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTCTGTGCTGT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCAGTGGTGCTACACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTCTGTGCTGT 959
Query 966 GCGTACATTCGCTGAGAGCATTATGAGATACGGTTTACCTCCGGCGTTCTTGGCATGTGT 1025
|||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 960 GCGTGTATTCGCTGAGAGCATTATGAGATATGGTTTACCTCCAGCGTTCTTGGCATGTGT 1019
Query 1026 CTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGA 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 CTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCATGTGTGA 1079
Query 1086 TTCTACCAACAGTTTATACTGGAAAAGCGAGGAGGATGCAGGAGC--------C-ATGGC 1136
||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1080 TTCTACCAACAGTTTGTACTGGAAAAGCGAGGAGGATGCAGGAGCTGGAGGAGCCATGGC 1139
Query 1137 TGGTTTAGCTGGTGACTCAGAGACACATCCTTATGTCTCCTTCACTATCAACCTTGCTTA 1196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGGTTTAGCCGGTGACTCAGAGACACATCCTTATGTCTCCTTCACTATCAACCTTGCTTA 1199
Query 1197 AAAATAT-GATGAGAGATGCTTTTGATGCCACTTCTCCTC-TGGTCT-TCT-CATCTGTT 1252
||| ||| ||||||||||||||||||||| |||||||||| | ||| ||| ||||||||
Sbjct 1200 AAA-TATTGATGAGAGATGCTTTTGATGCTACTTCTCCTCGTC-TCTGTCTTCATCTGTT 1257
Query 1253 ATATTTGTTTGTGGTCTATAGATTTCACATTTATTTTTCGTAACATATTTTGATTTTCAT 1312
||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1258 ATATTTGTTTGTGTTCTATAGATTTCACATTTATTTTTCGTAATATATTATGATTTTCA- 1316
Query 1313 AAATAAGGTGGAACTCAAGAGAGATGTTGCTGTAATTT-TATTTGGCCGGAGTCTTTTAG 1371
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 AAATAAGGTGGCACTCAAGAGAGATGTTGCTGTAATTTATATTTGGCCGGAGTCTTTTAG 1376
Query 1372 ATTCCGGCGAGTTTCAGACACTTGTGGAAGACAGAAGGGTTATACAGTTGTTAAAGCCTT 1431
||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1377 ATTCCGGTGAGTTTCAGACACTTGTGGAAGACAAAAGG-TTATACAGTTGTTAAAGCCTT 1435
Query 1432 TTTGTCATTTTGTGACATGGTTGATTTATTTATATCATCACTCTGTTTCGTTTTTGTCT 1490
|||||||||||||||| |||||||||||| ||||||| | |||||||||||| |||||
Sbjct 1436 TTTGTCATTTTGTGACCTGGTTGATTTATCTATATCA-C--TCTGTTTCGTTTCTGTCT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5