BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12850.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334590 jgi|Araly1|334590|fgenesh1_pg.C_scaffold_1001155 1814 0.0
> Ahg334590 jgi|Araly1|334590|fgenesh1_pg.C_scaffold_1001155
Length=1692
Score = 1814 bits (982), Expect = 0.0
Identities = 1115/1177 (95%), Gaps = 17/1177 (1%)
Strand=Plus/Plus
Query 36 ATGGGGTCATCACAGTCTTCGCAATTACTCGATgaagaagaagaagaagaagatgaagca 95
|||||||| ||||||||||||||| |||| ||| || |||||||| | | | ||||||
Sbjct 1 ATGGGGTCGTCACAGTCTTCGCAAATACT---TGATGATGAAGAAGATG-A-A-GAAGCA 54
Query 96 gagagcgaaggtgaagaagtagaagaagaagaagatgaagcaga-gagcgaattgaataa 154
|||||||||||||||| | ||||||||| ||||||| | | | ||| |||||| ||
Sbjct 55 GAGAGCGAAGGTGAAG-A--AGAAGAAGAGGAAGATG--TTA-ATG-GCGGATTGAACAA 107
Query 155 cagaagaaTCGAGCTGGATAATCTCTTGGTCAAGAAAGTTCTCGAGCAAGAGCCTGAGAT 214
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 108 CAGAAGAATCGAGCTGGATAATCTCTTGGTCAAGAAGGTTCTTGAGCAAGAGCCTGAGAT 167
Query 215 GCTTCCTTGTCACGCctctgcttctccactctctcctcagctctcttctcttggaactcc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GCTTCCTTGTCACGCCTCTGCTTCTCCACTCTCTCCTCAGCTCTCTTCTCTTGGAACTCC 227
Query 275 tcGAATCGGACCTTCCATTAAAGTCTGGGATCCTTACAACGTCCTCGCGCCACCTCCTCC 334
|||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||
Sbjct 228 TCGAATCGGACCTTCCATCAAAGTCTGGGACCCTTATAACGTCCTCGCG---CCTCCTCC 284
Query 335 TTCTTCTCCGCCTCTTTTCTCTCGTATCTCCTCCGCCGCGGAACACGATCGCTCCGCCGT 394
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 285 TTCTTCTCCGCCTCTCTTCTCTCGTATCTCCGCCGCCGCGGAACACGATCGCTCCGCCGT 344
Query 395 GACGGAAGTCTATTTCATCAGCCACGGCGAGTGTGATCTCAATCTCAGGCCTGATCTGAT 454
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 345 AACCGAAGTCTATTTCATCAGCCATGGCGAGTGTGATCTCAATCTCAGGCCTGATCTGAT 404
Query 455 TGGAGGTAGATGCCACGTGGCTACTCTCACACCCAACGGGAAACGTCAGGCGAGAGCTCT 514
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 405 TGGAGGTAGATGCCACGTGGCTACTCTCACACCCAATGGAAAACGTCAGGCGAGAGCTCT 464
Query 515 AGCCGTATTTTTAAACTCTGAAGGTGTTCGATTCACCTCCGTCTTCTCTTCGCCTCTGGA 574
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 465 CGCCGTCTTCTTAAACTCTGAAGGTGTTCGATTCACCTCTGTCTTCTCTTCGCCTCTGGA 524
Query 575 TCGAGCTAGATCCATGGCTGTTTCTGTTTGCCAGGAAATGAATTTTCCTGAGGAGCATTT 634
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 525 TCGAGCTAGATCCATGGCTGTTTCCGTTTGCCAGGAAATGAATTTTCCGGAGGAGCATTT 584
Query 635 GCAAGTCTCGGATGCTGTGGTTGAGATGAGTTTAGGGGACTGGGAAAGCTGTCATCGGTC 694
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCAAGTCTCGGATGCTGTCGTTGAGATGAGTTTAGGGGACTGGGAAAGCTGTCATCGGTC 644
Query 695 AGAGATTTACACACCTGAAACTCTAAGTTTAATAGAAAGATGCCAACCTGATTTCTCAGC 754
||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 645 AGATATCTACACACCGGAAACTCTAAGCTTAATAGAAAGATGCCAACCTGATTTCTCAGC 704
Query 755 TCCATCTGGTGAATCACTCAGACAAGTAGAGTTTCGGATGGTTCAGTTTCTGAATGGGAC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TCCATCTGGTGAATCACTCAGACAAGTAGAGTTTCGGATGGTTCAGTTTCTGAATGGGAC 764
Query 815 AGTCTCAGGACTTTCGGAGAAGCTCAGGTCAGAACTTCTTCCATCTACACAGCACACAAA 874
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 765 AGTCTCAGGACTTTCGGAGAAGCTCAGATCAGAACTTCTTCCATCTACACATCACACAAA 824
Query 875 TTCCAGAGGGTTCTCGTTAGCTACTTCTATTCATCGCCCAATTCTTACAAGGAAGAAATC 934
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 825 TTCCCGAGGGTTCTCGTTAGCCACTTCTATTCATCGTCCAATTCTTACAAGGAAGAAATC 884
Query 935 TGGGAAGAGCCGGTTTCAGGTGATGAATGCAACTGGTGATCACGAGGGTAGTGAAGAGAT 994
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 885 TGGGAAGAGCCGGTTTCAGGTGATGAATGCAACCGGTGATCACGAGGGTAGTGAAGAGAT 944
Query 995 ATTTAGTAATCACAATGATGAACAACACCTAGGTGATATAAACATCAAGAGTTCTTCTTC 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 945 ATTTAGTAATCACAATGATGAACAACACCTAGGTGATATAAACATCAAGAGTTCCTCTTC 1004
Query 1055 TCAACTCTCAACCTGCATTGGAGTTTTCACTCACTCTTTACCTATAAAGTGTCTTCTTAC 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TCAACTCTCAACCTGCATTGGAGTTTTCACTCACTCTTTACCTATAAAGTGTCTTCTTAC 1064
Query 1115 CGGTATCCTTGGATGCAGCCCGGTAATGACACATAAGATCTGTGTGGAGGATTCCTCTGT 1174
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1065 CGGTATCCTTGGATGCAGCCCGGTAATGACACAGAAGATCTGTGTGGAGGATTCATCTGT 1124
Query 1175 GACCGTATTACAGCATTCGTGGAAAACCGGGTGGCAG 1211
|||||| |||||||||||||||| |||||| ||||||
Sbjct 1125 GACCGTGTTACAGCATTCGTGGACAACCGGTTGGCAG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5