BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12855.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 874 0.0
Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 732 0.0
Ahg911073 jgi|Araly1|911073|Al_scaffold_0001_1327 122 5e-27
> Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118
Length=1224
Score = 874 bits (473), Expect = 0.0
Identities = 989/1228 (81%), Gaps = 75/1228 (6%)
Strand=Plus/Plus
Query 212 GAAAGAGAAGAAGAATACCTAGAGGAAGAGGAAACGAGAAGGCAGTGTTTGCACCATCAT 271
|||||| | |||||| | ||| ||||| ||||||||||| ||||| |||| |||||||
Sbjct 18 GAAAGATACGAAGAAGA---AGAAGAAGAAGAAACGAGAAGCCAGTGATTGCTCCATCAT 74
Query 272 CACTACCAAACGATGTTGTAGAGGAAATCTTCTTACGACTTCCGGTGAAAGCAATAATCC 331
| || |||||||| || || |||||||||||||| ||| |||| ||||||||| | || |
Sbjct 75 CTCTGCCAAACGACGTCGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACT-ATTC 133
Query 332 AACTAAAGTCTCTCTCAAAACAATGGAGATCGACGATCGAGTCTCGCAGT--TTTGAAGA 389
| | ||||||| ||||||||||||||||||||||||||| || | || |||||
Sbjct 134 --C----GACTCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGA 185
Query 390 GAGACACTTGAAGATCGTCGAGCGA-TCACGCGTGGATTTTCCACAG-GTCATGGTCATG 447
||||||||||| ||||| ||||| | || || |||| | ||| || || ||||| ||
Sbjct 186 GAGACACTTGAGGATCGCCGAGCAATTC-CGTGTGGGTCATCC-TAGAGTTATGGTGATC 243
Query 448 TCTGAAGAATATTCCTTGAAAGGAAGTAAAGGTAATC-AGCCTCGTCCAGATACAGACAT 506
||||| || || || | || || | || | || || |||||||||| ||||||||
Sbjct 244 ACTGAAAAAGATCCCCT--AA--AACT-AATG-CCTCTAG-CTCGTCCAGACACAGACAT 296
Query 507 TGGTTTTA-GTACAATCTGTTTGGAATCGGCTTCTATTCTGTCCTCCACTCTTATCACTT 565
|||||||| || || |||| |||||||||| |||| |||| |||| |||||| ||| ||
Sbjct 297 TGGTTTTAGGT-CATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATT 355
Query 566 TCCCTCAAGGATTTC-AACACCGGATCTATGCTTCTGAAAGCTGTGACGGACTTTTCTGC 624
| |||||| | |||| ||| ||||||| ||||| | | || || || |||||||||
Sbjct 356 TTCCTCAAAG-TTTCGCCCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGC 414
Query 625 ATCCATTCCCTAAAAACACAAGCCATATATGTAGTTAACCCGGCCACTCGGTGGTTTCGA 684
|||||||||| ||| | ||||| ||||||| ||||| |||||||| | |||||| ||
Sbjct 415 ATCCATTCCCCGAAATCGGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGG 474
Query 685 CAACTTCCTCCGGCTAGGTTTCAGATTTTGATGCAAAAG-TTATACCCCAC-TCAAGACA 742
||||||||||| ||||||||||| ||||||||||| ||| ||| |||| || | ||| |
Sbjct 475 CAACTTCCTCCAGCTAGGTTTCAAATTTTGATGCACAAGTTTA-ACCCTACTTTTAGAGA 533
Query 743 CTTGGATTGACATAAAACCAGT-AGTCTGTT-ATAC-AGCATTCGTGAAGGCCAATGATT 799
|||||| ||||| ||| ||||| || || | ||| ||||||||||||| | |||
Sbjct 534 -TTGGATAGACAT----GGAGTCAGTCT-TTCAT-CTAGCCTTCGTGAAGGCCACTAATT 586
Query 800 ACAAATTAGTGTGGTTG--------T-ATAA-T----T-CTGATGCCTCGAATCCAAACC 844
||||||||||||||||| | |||| | | |||||||||||| |||||||
Sbjct 587 ACAAATTAGTGTGGTTGTATAATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACG 646
Query 845 TGGGAGTTACAAAGTGCGAGGTTTTTGATTTTAGGGCAAACGCTTGGAGGTACTTGACTT 904
||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 647 AGGGAGTTACCAAGTGCGAGGTTTTTGACTTCAGGGCAAACGCTTGGAGGTACTTGGCTT 706
Query 905 GCACTCCAAGCTATCGGATAT-TCCCTGACCAAGTACCAGCA-GCTACAAACGGGTCTA- 961
|||||||||| |||||||||| | | ||| ||| |||||||| | | |||||||||| |
Sbjct 707 GCACTCCAAGTTATCGGATATAT-CATGATCAAATACCAGCATG-TGCAAACGGGTC-AG 763
Query 962 TTTATTGGTTCACGGAACCATATAATGGCGAAATAAAAGTGGTAGCTCTCGATATTCACA 1021
| |||||||||||||| |||||||||| |||| |||| || ||| | |||||||| |
Sbjct 764 TATATTGGTTCACGGAGCCATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATA 823
Query 1022 CTGAAACGTTTC-GTGTGCTACCTAAGATTAATCCGGCCATTGCTAGTTCAGATCCTGA- 1079
| ||| | || | || |||| ||||||||||| ||||| |||||| |||||||||| ||
Sbjct 824 CCGAATCATTCCGGT-TGCTGCCTAAGATTAAACCGGCTATTGCTGGTTCAGATCC-GAG 881
Query 1080 CCATATCGACATGTGCACTTTGGATAATGGTTTGTGCATGTCGAAAAGAGAATCGGATAC 1139
||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 882 GCATATTGACATGTGCACTCTGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGGATAC 941
Query 1140 GTTGGTCCAAGAGATATGGAGGTTAAAATCATCAGAAGACTCATGGGAGAAGGTTTATAC 1199
||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||
Sbjct 942 GTTGGTCCAAGAGATTTGGAGGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATAC 1001
Query 1200 CATAGATTTGCTTTCTTGTTCTTCTTCTTCTTTATCTGAGTTCCGCGATGGATTTAATTG 1259
||| ||||||||||||||||||||||| | ||| |||| ||||||| |||| | ||
Sbjct 1002 CATTGATTTGCTTTCTTGTTCTTCTTCC-CGGAATC--AGTTTCGCGATGAATTTGACTG 1058
Query 1260 GA-CACGAAAAGATTTGGTTGAGCCATCCACACCAGTGGCGATATGCAAGGACAAGAAGA 1318
|| || ||| ||||||||||| ||||||||||| |||||| |||||||| |||||||||
Sbjct 1059 GAGCAGGAAG-GATTTGGTTGATCCATCCACACCGGTGGCGGTATGCAAGAACAAGAAGA 1117
Query 1319 TTCT-GCTCTCACATCGCTATGCCCGCAATATGATCAAATACGATCCCCAAATAAAATCT 1377
| || |||||||||||||||| ||||| | || | ||||| ||||||| || || |||
Sbjct 1118 T-CTTGCTCTCACATCGCTATTCCCGCGGTCTGGTAAAATATGATCCCCTAACAAGGTCT 1176
Query 1378 ATCAGTTTAATTTACCAACCTCCTTTGT 1405
| | || ||||||||| ||||||||
Sbjct 1177 CTAACTTCGTTTTACCAACATCCTTTGT 1204
> Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1
Length=1266
Score = 732 bits (396), Expect = 0.0
Identities = 849/1057 (80%), Gaps = 73/1057 (7%)
Strand=Plus/Plus
Query 212 GAAAGAGAAGAAGAATACCTAG-AG--GAAGAGGAAACGAGAAGGC-AGTGTTTGCACCA 267
||| |||||||| |||| || || ||||| |||||||||| || ||| || |||
Sbjct 68 GAATGAGAAGAATAATAAGGAGAAGAAGAAGAAGAAACGAGAA-GCGAGTAAAGGCTCCA 126
Query 268 TCATCACTACCAAACGATGTTGTAGAGGAAATCTTCTTACGACTTCCGGTGAAAGCAATA 327
||||||||||||||||| | ||||| ||||| |||||| || ||||||||||||| ||
Sbjct 127 TCATCACTACCAAACGACATCGTAGAAGAAATTTTCTTAAGATTTCCGGTGAAAGCCCTA 186
Query 328 ATCCAACTAAAGTCTCTCTCAAAACAATGGAGATCGACGATCGAGTCTCGCAGTTTTGAA 387
|||| ||| ||||||||||||||| | |||| ||| ||||||||||||||||||||||||
Sbjct 187 ATCCGACTCAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCTCGCAGTTTTGAA 246
Query 388 GAGAGACACTTGAAGATCGTC-GAGCGATCAC-GCGTGGAT-TTTCCACAGGTCATGGTC 444
|||||| |||||||| ||| | ||| | | | || ||||| | ||| |||||||||||
Sbjct 247 GAGAGATACTTGAAGCTCG-CTAAGCAAGC-CTGCATGGATCATCCCA-AGGTCATGGTC 303
Query 445 ATGTCTGAAGAATATTCCTTGAAAG-GAAGTAAAGGTAATCAGCCTCGTCCAGATACAGA 503
|| | |||||| || || | ||| ||| | ||| ||| | | ||| | |||||
Sbjct 304 ATCACAGAAGAAGATCCCAT--AAGAGAAAT-CGGGT-ATC-GTC-CGTTC----ACAGA 353
Query 504 CATTGGTTTTAGTACAATCTGTTTGGAATCGGCTTCTATTCTGTCCTCCACTCTTATCAC 563
|||||||||||| || ||||| ||||||||||||||| |||| |||| |||| | |||
Sbjct 354 CATTGGTTTTAGGACGATCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCTCAA 413
Query 564 TTTCCCTCAA-GGAT-TTCAACACCGGATCTATGCT-TCTGAAAGCTGTGACGGACTTTT 620
|||||||||| || | ||| ||| ||||| | | |||||||||||||| || |||||
Sbjct 414 TTTCCCTCAAGGGTTCTTC--CACTGGATC-AAAATCTCTGAAAGCTGTGATGGCCTTTT 470
Query 621 CTGCATCCATTC-CCTAAAAACACAAGCCATATATGTAGTTAACCCGGCCACTCGGTGGT 679
||| |||||||| || |||| |||| | ||||||||||||| ||||| || ||||||
Sbjct 471 CTGTATCCATTCACC-AAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGC 529
Query 680 TTCGACAACTTCCTCCGGCTAGGTTTCAGATTTTGATGCAAAAG-TTATACCCCACTCA- 737
| || | ||||||||||||| |||||||||||||||| || ||| ||| ||||||| |
Sbjct 530 TCCGCCTACTTCCTCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTA-ACCCCACGGAG 588
Query 738 AGACACTTGG-AT-T-GACATAAAACCAGTAGTCTGTT-ATAC-AGCATTCGTGAAGGCC 792
| | ||| || | || || ||| || | ||| || || | ||||||||||||||||
Sbjct 589 CGTGA-GTGGAATATAGAAATGAAATCA--A-TCT-TTCAT-CTAGCATTCGTGAAGGCC 642
Query 793 AATGATTACAAATTAGTGT-G--G------T-TG-T-A-TA-ATT-CTGATGCCTCGAAT 837
| |||||||||||||||| | | | || | | || ||| ||||||| |||| |
Sbjct 643 ACCGATTACAAATTAGTGTGGTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGT 702
Query 838 CCAAACCTGGGAGTTACAAAGTGCGAGGTTTTTGATTTTAGGGCAAACGCTTGGAGGTAC 897
|||||| ||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 703 CCAAACGTGGGAGTCACAAAGTGCGAGGTTTTTGACTTTAGGGTAAATGCTTGGAGGTAC 762
Query 898 TTGACTTGCACTCCAAGCT-ATCGGATATTCCCTGACCAAGTA-CCAGCAGCTACAAACG 955
||| ||||||||||||| | |||||||||| ||||||| | |||||| || ||||||
Sbjct 763 TTGGCTTGCACTCCAAG-TCATCGGATATTTTATGACCAA-AAGCCAGCATCTGCAAACG 820
Query 956 GGTCTATTTATTGGTTCACGGAACCATATAATGGCGA-AATAAAAGTGGTAGCTCTCGAT 1014
|||| |||||||||| ||||||||||||||| | | ||| |||| || ||| | |||
Sbjct 821 GGTCGGTTTATTGGTTTACGGAACCATATAAT-GAAAGAATCGAAGTAGTGGCTTTTGAT 879
Query 1015 ATTCACACTGAAACGTTTC-GTGTGCTACCTAAGATTAATCCGGCCATTGCTAGTTCAGA 1073
||||| || ||||| || | || |||| |||||||| |||||||| |||||| |||||||
Sbjct 880 ATTCATACCGAAACATTCCGGT-TGCTGCCTAAGATAAATCCGGCTATTGCTGGTTCAGA 938
Query 1074 TCCTGACCATATCGACATGTGCACTTTGGATAATGGTTTGTGCATGTCGAAAAGAG-AAT 1132
|||| ||||||| |||||||||||| |||||||| ||||||| ||||||||||||| ||
Sbjct 939 TCCTCACCATATTGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGAAAA 998
Query 1133 CGGATACGT-TGGTCCAAGAGATATGGAGGTTAAAATCATCAGAAGACTCATGGGAGAAG 1191
| ||||| | || ||||||| || |||||| ||||| ||||||||||| |||||||||||
Sbjct 999 C-GATAC-TATGATCCAAGATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAG 1056
Query 1192 GTTTAT-ACCATAGATTTGCTTTCTTGTTCTTCTTCT 1227
||| | ||||||||||||||||||||||||||||||
Sbjct 1057 ATTT-TCACCATAGATTTGCTTTCTTGTTCTTCTTCT 1092
Score = 117 bits (63), Expect = 2e-25
Identities = 137/172 (80%), Gaps = 7/172 (4%)
Strand=Plus/Plus
Query 1270 GATTTGGTTGAGCCATCCACACCAGTGGC-GATATGCAAGGACAAGAAGATTCTGCTCTC 1328
||||||||||||||||||||||||||||| | |||||||| | ||||||||||| |||||
Sbjct 1099 GATTTGGTTGAGCCATCCACACCAGTGGCAG-TATGCAAGAATAAGAAGATTCTACTCTC 1157
Query 1329 ACATCGCTATGCCCGCAATATGATCAAATACGATCCCCAAATAAAATCTATCAGTTTAAT 1388
|||| ||||| ||||| | || | ||||| ||| || || ||| ||| || | || |
Sbjct 1158 ACATTGCTATTCCCGCGGTCTGGTAAAATATGATTCCTTAACAAAGTCTCTC-GATTCTT 1216
Query 1389 TTACCAACCTCCTTTGTGTA-GAAGATATGCTT-CTTATTTTCAGAGTTTGA 1438
|| || || ||||| || || || || | | || |||||||||| |||||||
Sbjct 1217 TTTCCTACATCCTTGGTCTAAGA-GAAAAG-TTACTTATTTTCAAAGTTTGA 1266
> Ahg911073 jgi|Araly1|911073|Al_scaffold_0001_1327
Length=546
Score = 122 bits (66), Expect = 5e-27
Identities = 109/129 (84%), Gaps = 6/129 (5%)
Strand=Plus/Plus
Query 590 TCTATGCTTCTGAAAGCTGTGACGGACTTTTCTGCATCCATTCC-CTAAAAACACAAGCC 648
|||| | |||| |||| || ||||| |||||||||||| ||||| | |||| || ||
Sbjct 323 TCTACGTTTCTAAAAGTTGCGACGGTCTTTTCTGCATCTATTCCAC-AAAATCA-GAG-T 379
Query 649 ATATAT--GTAGTTAACCCGGCCACTCGGTGGTTTCGACAACTTCCTCCGGCTAGGTTTC 706
||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 380 TTATATGGGTAGTTAATCCGGCCACACGGTGGTTTAGACAACTTCCTCCGGCTAGGTTTC 439
Query 707 AGATTTTGA 715
|||||||||
Sbjct 440 AGATTTTGA 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5