BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12860.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911072 jgi|Araly1|911072|Al_scaffold_0001_1326 1834 0.0
Ahg484449 jgi|Araly1|484449|fgenesh2_kg.5__441__AT3G26744.2 612 3e-174
> Ahg911072 jgi|Araly1|911072|Al_scaffold_0001_1326
Length=1353
Score = 1834 bits (993), Expect = 0.0
Identities = 1261/1381 (91%), Gaps = 56/1381 (4%)
Strand=Plus/Plus
Query 406 ATGAACAGCGACGGTGTTTGGCTTGACGGCTCCGGTGAATCTCCGGAAGTTAATAACGGT 465
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 ATGAACGGCGACGGTGTTTGGCTTGACGGCGCCGGTGAATCTCCGGAGGTTAATAACGGT 60
Query 466 GAAGCTGCGTCTTGGGTCAGAAACCCAGATGAAGACTGGTTCAATAACCCACCACCACCA 525
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 GAAGCTGCGTCGTGGGTCAGAAACCCAGATGAGGATTGGTTCAATAACCCACCACCACCA 120
Query 526 CAAC--A-----CAC--TAATCAAAACGACTTCAGATTCAATGGTGGCTTTCCTTTAAAC 576
|||| | ||| ||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 121 CAACAAATCCTCCACAGTAACCAAAATGACTTCAGATTCAATGGTGGGTTTCCATTAAAC 180
Query 577 CCCTCAGAGAATCTGcttcttcttcttcagcaatcgattgattcttcttcttcttcttct 636
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||
Sbjct 181 CCCTCAGAGAATCTGCTTCTTCTTCTTCAGCAATCGATTGA---TTCGTCTTGTTCTGCT 237
Query 637 CCGTTATTACATCCTTTCACACTCGACGCTGCTTCACAGcaacaacaacaacaacaacaa 696
||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 238 CCG---TTACATCCTTTCACACTCGACGCTGCTT-----C-ACAACAACAACAACAACAA 288
Query 697 caacaGGAACAGTCTTTCTTAGCTACGAAAGCTTGTATAGTTTCTCTTCTCAACGTCCCA 756
| | | |||||||||||||||||||| |||||||| |||| |||||||||||| ||||||
Sbjct 289 C-A-A-GAACAGTCTTTCTTAGCTACAAAAGCTTGCATAGCTTCTCTTCTCAATGTCCCA 345
Query 757 ACCATCAATAACAACACTTTCGATGACTTCGGCTTTGACTCT-GGTTTCTTAG-GACAAC 814
|||| ||||| ||||||||||||||| ||||||||||| ||| ||||| || | | ||||
Sbjct 346 ACCAGCAATATCAACACTTTCGATGAATTCGGCTTTGATTCTGGGTTT-TT-GAGTCAAC 403
Query 815 AATTCCATGGAAATCATCAATCTCCGAACTCGATGAATTTCACTGGCTTAAACCACTCA- 873
|||||||||| || |||||||||| ||||||||||||||| |||| || |||||| ||
Sbjct 404 AATTCCATGG-AA--ATCAATCTCCAAACTCGATGAATTTCGCTGGATTGAACCAC-CAG 459
Query 874 GTACCGGA-----T---TT-----TC--TTCCAGCTCCGGAAAACAGCTCAGGATCATGT 918
| |||||| | || || ||||||| ||||||||||||||||||||||||
Sbjct 460 GGACCGGATTTTCTCACTTCCCGGTCAATTCCAGCGCCGGAAAACAGCTCAGGATCATGT 519
Query 919 GGATTGAGTCCTCTGTTCTCA-AACAGAGCAAAGGTTTTAAAACCGTTACAGGTAATGGC 977
|||||||||||||||||| | |||||| |||||||| | || || ||| |||| ||||
Sbjct 520 GGATTGAGTCCTCTGTTC-GAGAACAGAACAAAGGTTCTGAAGCCATTAGAGGTGTTGGC 578
Query 978 TTCATCTGGCTCGCAGCCAACTCTGTTTCAGAAACGAGCTGCAATGCGTCAGAGCTCGAG 1037
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 579 TTCATCTGGCTCGCAGCCAACTTTGTTTCAGAAACGAGCTGCAATGCGTCAGAGTTCGAG 638
Query 1038 TAGCAAAATGTGCAATTCTGAGAGTTCTTCTGAAATGAGGAAATCGAGCTACGAGAGAGA 1097
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TAGCAAAATGTGCAATTCAGAGAGTTCTTCTGAAATGAGGAAATCGAGCTACGAGAGAGA 698
Query 1098 GATTGACGATACTAGTACCGGAATCATCGATATCTCTGGATTGAATTACGAATCTGATGA 1157
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 699 GATTGACGATACGAGTACCGGAATCATCGATATCTCTGGATTGAACTACGAATCTGATGA 758
Query 1158 CCATAATACTAATAACAACAaaggtaagaagaaaggaatgcctgcaaagaatcttatggc 1217
||| || |||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 759 GCAT-AT--TAAT---AATAAAGGTAAGAAGAAAGGAATGCCTGCAAAGAATCTAATGGC 812
Query 1218 tgagagaagaagaaggaagaagCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCC 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGAGAGAAGAAGAAGGAAGAAGCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCC 872
Query 1278 CAAGATCAGCAAAATGGATAGAGCATCAATACTTGGAGATGCTATTGATTACCTCAAAGA 1337
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 873 CAAGATCAGCAAAATGGATAGAGCAGCAATACTTGGAGATGCTATTGATTACCTCAAAGA 932
Query 1338 GCTTTTACAAAGAATCAACGATCTTCACACCGAACTTGAATCTACTCCACCGAGTTCTTC 1397
||| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 933 GCTCTTACAGAGAATCAACGATCTTCATACCGAACTAGAGTCTACTCCACCGAGTTCTTC 992
Query 1398 AAGCTTGCATCCGTTAACACCGACTCCACAAACGCTGTCTTACCGTGTTAAGGAAGAGTT 1457
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 993 AAGCTTGCACCCGTTAACACCGACTCCACAAACGCTATCTTACCGTGTTAAGGAAGAGTT 1052
Query 1458 GTGTCCATCTTCCTCCTTGCCAAGTCCTAAAGGCCAACAACCAAGAGTTGAGGTTAGATT 1517
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1053 GTGTCCATCTTCCTCCTTGCCAAGCCCTAAAGGCCAGCAACCGAGAGTTGAGGTTAGATT 1112
Query 1518 AAGAGAAGGAAAGGCAGTGAACATACACATGTTCTGTGGACGTAGACCAGGTCTTTTACT 1577
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1113 AAGGGAAGGAAAGGCAGTGAACATTCACATGTTCTGTGGACGTAGACCAGGTCTTTTGCT 1172
Query 1578 TTCCACCATGAGAGCTTTGGATAACTTAGGATTGGATGTTCAACAAGCGGTGATTAGCTG 1637
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1173 TTCCACCATGAGAGCTTTGGATAACTTAGGATTGGATGTTCAACAAGCTGTGATTAGCTG 1232
Query 1638 TTTCAATGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGTCAAGAAGACCATGACGT 1697
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1233 TTTCAACGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGACCATGACGT 1292
Query 1698 GTTACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTG 1757
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1293 GTTGCCTGAACAAATCAAAGCAGTGCTTTTAGACACAGCAGGTTACGCTGGTTTGGTTTG 1352
Query 1758 A 1758
|
Sbjct 1353 A 1353
> Ahg484449 jgi|Araly1|484449|fgenesh2_kg.5__441__AT3G26744.2
Length=1888
Score = 612 bits (331), Expect = 3e-174
Identities = 514/599 (86%), Gaps = 26/599 (4%)
Strand=Plus/Plus
Query 1180 ggtaagaagaaaggaatgcctgcaaagaatcttatggctgagagaagaagaaggaagaag 1239
||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 1058 GGTAAGAAGAAAGGAATGCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAG 1117
Query 1240 CTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCCCAAGATCAGCAAAATGGATAGA 1299
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1118 CTTAATGATAGGCTTTATATGCTTAGATCAGTTGTCCCCAAGATAAGCAAAATGGATAGA 1177
Query 1300 GCATCAATACTTGGAGATGCTATTGATTACCTCAAAGAGCTTTTACAAAGAATCAACGAT 1359
|||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||
Sbjct 1178 GCATCAATACTTGGAGATGCAATTGATTATCTCAAGGAACTTTTACAAAGGATCAACGAT 1237
Query 1360 CTTCACACCGAACTTGAATCTACTCCACC-G-AG-TT--C-T-----T-CA--A-GCTTG 1404
||||||| ||||||||| || ||||| || | | || | | | || | ||||
Sbjct 1238 CTTCACAACGAACTTGAGTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTC 1297
Query 1405 CATCCGTTAACACCGACTCCACAAACGCTGTCTTACCGTGTTAAGGAAGAGTTGTGTCCA 1464
||||||||||| || || || || || || |||| ||| || || |||||||| ||||||
Sbjct 1298 CATCCGTTAACGCCTACACCGCAGACTCTTTCTTGCCGGGTCAAAGAAGAGTTATGTCCA 1357
Query 1465 TCTTCCTCCTTGCCAAGTCCTAAAGGCCAACAACCAAGAGTTGAGGTTAGATTAAGAGAA 1524
||||| | |||||||||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct 1358 TCTTC-T--TTGCCAAGTCCTAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAA 1414
Query 1525 GGAA-AGGCAGTGAACATACACATGTTCTGTGGACGTAGACCAGGTCTTTTACTTTCCAC 1583
|||| || |||||||||| || ||||||||||| |||||||| ||||| ||||| | ||
Sbjct 1415 GGAAGAG-CAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTCTTACTCGCTAC 1473
Query 1584 CATGAGAGCTTTGGATAA-CTTAGGATTGGATGTTCAACAAGCGGTGATTAGCTGTTTCA 1642
||||| |||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 1474 CATGAAAGCTTTGGATAATCTT-GGATTGGATGTTCAGCAAGCCGTGATCAGCTGTTTCA 1532
Query 1643 ATGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGTCAAGAAG-ACCATGACG-TGTT 1700
| || ||||| |||||||||||||||||||||||||| ||||||| || | || | | ||
Sbjct 1533 ACGGGTTTGCCTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGGACAA-GA-GATATT 1590
Query 1701 ACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTGAT 1759
||||| |||||||||||||||||||| ||||||||||| ||||||||| || | ||||
Sbjct 1591 GCCTGATCAAATCAAAGCAGTGCTTTTCGATACAGCAGGGTACGCTGGTATGATCTGAT 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5