BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12870.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 470 1e-131
Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 444 8e-124
Ahg911137 jgi|Araly1|911137|Al_scaffold_0001_1391 198 7e-50
Ahg911073 jgi|Araly1|911073|Al_scaffold_0001_1327 119 6e-26
> Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118
Length=1224
Score = 470 bits (254), Expect = 1e-131
Identities = 708/913 (78%), Gaps = 88/913 (10%)
Strand=Plus/Plus
Query 285 TCCAGACATAGAGATTAGTTTTAGGACTA-TCT-CTTTGGAATC-AGTTAGTTTTTTATC 341
|||||||| ||| ||| |||||||| | | ||| | |||||||| ||| | || ||||
Sbjct 282 TCCAGACACAGACATTGGTTTTAGGTC-ATTCTGC-TTGGAATCGGGTT-CTCTTCTATC 338
Query 342 CTCTGCTCTTTTCAATTTCCCTCGCGGATTC-CATCATC-CCATCTACGCTTCTGAAAGC 399
|| | ||||| ||||||| |||| | ||| | || | ||||| | ||||| | |
Sbjct 339 CTTTACTCTTCTCAATTTTCCTCAAAGTTTCGC-CCA-CTATATCTATGTTTCTGGATGT 396
Query 400 TGTGACGGAATTTTCTGCATTCATTCCCCAAAAACACAAGACATATATGTAGTTAATCCA 459
|| || || |||||||||| |||||||| ||| | ||| | ||||||| ||||||||
Sbjct 397 TGCGATGGCCTTTTCTGCATCCATTCCCCGAAATCGGAAGCCGTATATGTTGTTAATCCG 456
Query 460 GCAACAC-GTTGGTTCCGACAACTTCCTCCGGCTAGGTTTCAGATCTTT-ATGCACAAGT 517
|| |||| | ||||| || ||||||||||| ||||||||||| || ||| ||||||||||
Sbjct 457 GCCACACAG-TGGTTACGGCAACTTCCTCCAGCTAGGTTTCAAAT-TTTGATGCACAAGT 514
Query 518 TAAACCCCAC-TCTAGATACTTTGAGAGACAT-GATACCAGTCAATCATCTAGCATTCGT 575
| ||||| || | |||| | || || |||||| || ||||| ||||||||| |||||
Sbjct 515 TTAACCCTACTTTTAGAGA-TTGGATAGACATGGA-GTCAGTCTTTCATCTAGCCTTCGT 572
Query 576 GAAGGCCACTGATTACAAATTAGTGTGGTTG--------T-AT-A--AC--T-CTGATG- 619
|||||||||| |||||||||||||||||||| | || | || | ||||||
Sbjct 573 GAAGGCCACTAATTACAAATTAGTGTGGTTGTATAATTCTGATAAGTACAATGCTGATGC 632
Query 620 C-C---T-----CGA--GAGTTACTAAGTGCGAGGTTTTTGATTTTAAGGCAAACGCTTG 668
| | | ||| ||||||| ||||||||||||||||| || | ||||||||||||
Sbjct 633 CTCGAGTCCAAACGAGGGAGTTACCAAGTGCGAGGTTTTTGACTTCAGGGCAAACGCTTG 692
Query 669 GAGATACTTGACTTGCA-TACCAAGTTATCGAATATATCATGACCAAA-AGCCAGCATCT 726
||| |||||| |||||| | ||||||||||| ||||||||||| |||| | ||||||| |
Sbjct 693 GAGGTACTTGGCTTGCACT-CCAAGTTATCGGATATATCATGATCAAATA-CCAGCATGT 750
Query 727 GCAAACGGGAC-GCTTTATTGGTTCACGGAAACATATAATGCA-GAAATCAAAGTAATAG 784
||||||||| | | | |||||||||||||| ||||||||| | ||||| ||||| | |
Sbjct 751 GCAAACGGGTCAG-TATATTGGTTCACGGAGCCATATAATG-ATAAAATCGAAGTAGTGG 808
Query 785 CTTTGGATATTCACACCGAAAT-ATTTCGGTTGCTGCCTAAGCCT-AGCC--TTATTGCT 840
|||| |||||||| |||| ||| ||| ||||||||||||||| | | || |||||||
Sbjct 809 CTTTTGATATTCATACCG-AATCATTCCGGTTGCTGCCTAAGATTAAACCGGCTATTGCT 867
Query 841 AGTTCAGAGCCTAGCCATATTGACATGTGCATTATAGATAATAGTTTGTGCATGTACG-A 899
||||||| || || |||||||||||||||| | | |||||| |||||||||||| || |
Sbjct 868 GGTTCAGATCCGAGGCATATTGACATGTGCACTCTGGATAATGGTTTGTGCATGT-CGAA 926
Query 900 AACAGAAGGGGATAAGAAGATCATCCAAGAGATTTGGAGGTTGAAATCATCGGAAGACGC 959
|| |||| |||| | | | |||||||||||||||||||||||||||| ||||||
Sbjct 927 AAGAGAACCGGAT---ACGTTGGTCCAAGAGATTTGGAGGTTGAAATCATCAGAAGACTT 983
Query 960 ATGGGAGAAGATTTATACCATAAATCTGCTTTCTTCTTCTTATTGCC--ATTTCCATGTT 1017
||||||||||||||||||||| || ||||||||| ||||| || || | | | | |||
Sbjct 984 ATGGGAGAAGATTTATACCATTGATTTGCTTTCTTGTTCTTCTTCCCGGAAT-C-A-GTT 1040
Query 1018 CTCGATGGATATAATTTGACCAGATTATGTTATTGGACCCAAAAGGATTTGGTTGAGTC- 1076
||| | || |||||||| || | | ||| | |||||||||||| ||
Sbjct 1041 -TCGC-G-ATG-AATTTGACTGGA----GC-A--GGA---A---GGATTTGGTTGA-TCC 1082
Query 1077 ATCCACACCGGTGGCGATATACAAGGACAAGAAGATCATACTCTCACATCGCTATACCTG 1136
|||||||||||||||| ||| |||| ||||||||||| | ||||||||||||||| || |
Sbjct 1083 ATCCACACCGGTGGCGGTATGCAAGAACAAGAAGATCTTGCTCTCACATCGCTATTCCCG 1142
Query 1137 CAATCTGGGTAAA 1149
| ||||| ||||
Sbjct 1143 CGGTCTGG-TAAA 1154
> Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1
Length=1266
Score = 444 bits (240), Expect = 8e-124
Identities = 779/1023 (76%), Gaps = 101/1023 (10%)
Strand=Plus/Plus
Query 54 AAGAAAG-AGAAGATACAAGAAGCTAATGATTGCAT-CATCATCATTACCAGACGATGTC 111
||| ||| |||||| || |||||| | | | || | |||||||| ||||| |||| ||
Sbjct 90 AAG-AAGAAGAAGAAACGAGAAGCGAGTAAAGGC-TCCATCATCACTACCAAACGACATC 147
Query 112 GTAGAAGAAATCTTCTTGAA-ACTTCCGGTCAAAGCCCTAATGAGATTTAAGTCTCTCTC 170
||||||||||| ||||| || | ||||||| ||||||||||| || | |||||||||||
Sbjct 148 GTAGAAGAAATTTTCTT-AAGATTTCCGGTGAAAGCCCTAATCCGACTCAAGTCTCTCTC 206
Query 171 AAAACAATGGAGATCGACGCTCGAGTCTTGCTA-TTTCT-CACAGAGGCACTTGAAAATA 228
|||| | |||| ||| ||| |||||||| || | ||| | | |||| ||||||| |
Sbjct 207 AAAATATTGGAAATCAACGATCGAGTCTCGC-AGTTT-TGAAGAGAGATACTTGAAGCTC 264
Query 229 GCCGAGCGATCACATG--TGGATCATCCAAAAGTCATGATCATCACTG-A-AA-A----A 279
|| ||| | | | || |||||||||| || |||||| ||||||| | | || | |
Sbjct 265 GCTAAGCAAGC-C-TGCATGGATCATCCCAAGGTCATGGTCATCACAGAAGAAGATCCCA 322
Query 280 T--G-G--A------ATC--CAG-ACATAGAGATTAGTTTTAGGACTATCT-CTTTGGAA 324
| | | | ||| | | || ||| ||| |||||||||| |||| | ||||||
Sbjct 323 TAAGAGAAATCGGGTATCGTCCGTTCACAGACATTGGTTTTAGGACGATCTGC-TTGGAA 381
Query 325 TCAG-TTAGTTTTTTATCCTCTGCTCTTTTCAATTTCCCTCGCGGATTCCAT-CATC-CC 381
|| | || | || |||||| | ||| | |||||||||||| || || | | || |
Sbjct 382 TCGGCTT-CTCTTCTATCCTATACTCGTCTCAATTTCCCTCAAGGGTT-CTTCCA-CTGG 438
Query 382 ATCTACGCT-TCTGAAAGCTGTGACGGAATTTTCTGCATTCATTCCCCAAAAACACAAGA 440
||| | | |||||||||||||| || ||||||| || ||||| |||||| ||| |
Sbjct 439 ATC-AAAATCTCTGAAAGCTGTGATGGCCTTTTCTGTATCCATTCACCAAAATCAC-ATT 496
Query 441 C-ATATATGTAGTTAATCCAGCAACACGTTGGTTCCGACAACTTCCTCCGGCTAGGTTTC 499
| |||||||||||||||| || ||||| ||| |||| | ||||||||||||| ||||||
Sbjct 497 CTGTATATGTAGTTAATCCGGCTACACGGTGGCTCCGCCTACTTCCTCCGGCTGGGTTTC 556
Query 500 AGATCTTT-ATGCACAAGTTAAACCCCACTCTAG-AT-ACTTTG---AGAGACATGATAC 553
|||| ||| || |||||||| |||||||| || | | | | | ||| |||| |
Sbjct 557 AGAT-TTTGATCCACAAGTTTAACCCCAC-GGAGCGTGA-GTGGAATATAGAAATGAAAT 613
Query 554 CAGTCAATCATCTAGCATTCGTGAAGGCCACTGATTACAAATTAGTGT-G--G-----TT 605
|| || |||||||||||||||||||||||| |||||||||||||||| | | ||
Sbjct 614 CAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTGGTTGTATAATT 673
Query 606 GT-AT-A--AC--T-CTGATGCCTCGAG-----A-GT-----T-ACTAAGTGCGAGGTTT 646
|| || | || | ||||||| ||||| | || | || |||||||||||||
Sbjct 674 GTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGTGGGAGTCACAAAGTGCGAGGTTT 733
Query 647 TTGATTTTAAGGCAAACGCTTGGAGATACTTGACTTGCA-TACCAAGTTATCGAATATAT 705
|||| |||| || ||| |||||||| |||||| |||||| | |||||| |||| |||| |
Sbjct 734 TTGACTTTAGGGTAAATGCTTGGAGGTACTTGGCTTGCACT-CCAAGTCATCGGATATTT 792
Query 706 CATGACCAAAAGCCAGCATCTGCAAACGGGACGCTTTATTGGTTCACGGAAACATATAAT 765
||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||
Sbjct 793 TATGACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTACGGAACCATATAAT 852
Query 766 GCA-GAAATCAAAGTAATAGCTTTGGATATTCACACCGAAATATTTCGGTTGCTGCCTAA 824
| | ||| || ||||| | ||||| |||||||| ||||||| ||| ||||||||||||||
Sbjct 853 GAAAGAA-TCGAAGTAGTGGCTTTTGATATTCATACCGAAACATTCCGGTTGCTGCCTAA 911
Query 825 GCCTAG--CCT--TATTGCTAGTTCAGAGCCT-AGCCATATTGACATGTGCATTATAGAT 879
| || || ||||||| ||||||| ||| | ||||||||||||||||| | | |||
Sbjct 912 GA-TAAATCCGGCTATTGCTGGTTCAGATCCTCA-CCATATTGACATGTGCACTCTGGAT 969
Query 880 AATAGTTTGTGCATGTACGAAAC-AGAAGGGGATAAGAAGATCATCCAAGAGATTTGGAG 938
||||||||||| |||| ||||| |||| |||| | |||| | |||| ||||||||
Sbjct 970 AATAGTTTGTGTATGT-CGAAAAGAGAAAACGATACTATGATC--C-AAGATATTTGGAG 1025
Query 939 GTTGAAATCATCGGAAGACGCATGGGAGAAGATTTAT-ACCATAAATCTGCTTTCTTCTT 997
| | ||| |||| |||||| ||||||||||||||| | |||||| || ||||||||| ||
Sbjct 1026 GCTAAAACCATCAGAAGACACATGGGAGAAGATTT-TCACCATAGATTTGCTTTCTTGTT 1084
Query 998 CTT 1000
|||
Sbjct 1085 CTT 1087
> Ahg911137 jgi|Araly1|911137|Al_scaffold_0001_1391
Length=1143
Score = 198 bits (107), Expect = 7e-50
Identities = 289/372 (78%), Gaps = 31/372 (8%)
Strand=Plus/Plus
Query 629 TTACTAAGTGCGAGGTTTTTGATTTTAAGGCAAACGCTTGGAGATACTTGACTTGCA-TA 687
|||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 548 TTACCAAGTGCGAGGTTTTCGATTTTAGGGCAAACGCTTGGAGATACTTGACTTGCACT- 606
Query 688 CCAAGTTATCGAATATATCATGACCAAAAGCCAGCATCTGCAAACGGG--ACGCTTTATT 745
||||| || ||||||| | | ||||||| |||||||| |||||||| | | ||||||
Sbjct 607 CCAAGGTACCGAATATTTAACGACCAAACCCCAGCATCCGCAAACGGATTA-G-TTTATT 664
Query 746 GGTTCACGGAAAC-ATATAATGCAGAAATCAAAGTAATAGCTTTGGATATTCACACCGAA 804
|| |||||||| | ||| |||| |||| |||||| |||| ||| ||| |||| || |||
Sbjct 665 GGCTCACGGAA-CGATACAATGGTGAAACCAAAGTTATAGTTTTTGATCTTCAAACTGAA 723
Query 805 A-TATTTCGGTTGCTGCCTAAGCCTAGCCTTATTGCTAGTTCAGAGCCTAG-CCATATTG 862
| | ||||| ||||| |||||| | || | ||||||||| | || || |||||| |
Sbjct 724 ACT-TTTCGATTGCTACCTAAGAAT--CCAGCT-GCTAGTTCACATCC-AGACCATATCG 778
Query 863 ACATGTGCATTATAGATAATAGTTTGTGCATGTACGAAACAGAA-G-G-GGATAAGAAGA 919
|| |||||||| | |||||||| | || |||| |||| |||| | | || || ||
Sbjct 779 ACCTGTGCATTTTGGATAATAGACTCTGTATGT-CGAAG-AGAAAGCGCGG-TAC-AA-- 832
Query 920 TCATCCAAGAGATTTGGAGGTTG-AA--ATCATCGGAAGACG-CATGGGAGAA-GATTTA 974
| |||||| |||||||||| ||| || ||||| || || | || || | || ||||||
Sbjct 833 TGATCCAAAAGATTTGGAGCTTGCAAGTATCATTAGAGGA-GACAAGG-ACAAAGATTTA 890
Query 975 TACCATAAATCT 986
||| ||| ||||
Sbjct 891 TACTATAGATCT 902
> Ahg911073 jgi|Araly1|911073|Al_scaffold_0001_1327
Length=546
Score = 119 bits (64), Expect = 6e-26
Identities = 325/445 (73%), Gaps = 41/445 (9%)
Strand=Plus/Plus
Query 86 CATCATCATCATTACCAGACGATGTCGTAGAAGAAATCTTCTTGAAACTTCCGGTCAAAG 145
||||||||||| | | |||| || ||||| ||||||||||||| |||||| || |||
Sbjct 20 CATCATCATCACTGGTAAACGACGTTGTAGAGGAAATCTTCTTGAGACTTCCTGTGAAAT 79
Query 146 CCCTAATGAGATTTAAGTCTCTCTCAAAACAATGGAGATCGACGCTCGAGTCTTGCTA-T 204
| ||||| || | |||||||||||||||||||||||||| ||| || ||||| | || |
Sbjct 80 CACTAATCCGACTCAAGTCTCTCTCAAAACAATGGAGATCAACGATCCAGTCTCG-TAGT 138
Query 205 TTCT-CACAGAGGCACTTGAAAATAGCCGAGCGATCACATGTGGATCATC-CAAAAGTCA 262
|| | || |||| |||||||| | ||| | |||| || |||| || | |||||||||
Sbjct 139 TT-TGCAGAGAGACACTTGAAGTTTGCCAAAAGATCCCACATGGAACA-CTCAAAAGTCA 196
Query 263 T-G--ATC-A-T-CACTGAA-AAAT-G-GAATCCAGACATAG--AGATTAGTTTT-AGGA 310
| | ||| | | || ||| | | | ||| | |||| | |||| ||||| | |
Sbjct 197 TCGCCATCAATTCCAGAGAATACTTCGAAAAT-GA-ACATCGTTCGATTTGTTTTCA-TA 253
Query 311 CTA-TCTCTTTGGA-ATCAGTTAGTTTTTTATCCTCTGCTCTTTTCAATTTCCC-TCGCG 367
| | |||| || || || | || |||| | | ||||| ||| |||| || ||
Sbjct 254 C-ACTCTCCTTAGAGCCCA-CTCCACTTCTATCGTTTACTCTTCCCAA-ATCCCATC-CG 309
Query 368 -GATTCCAT-CATCCCATCTACGCTTCTGAAAGCTGTGACGGAATTTTCTGCATTC-ATT 424
||| | | || |||||| |||| |||| || ||||| ||||||||| || |||
Sbjct 310 AAATT-C-TCCA--GTTTCTACGTTTCTAAAAGTTGCGACGGTCTTTTCTGCA-TCTATT 364
Query 425 CCCCAAAAACACAAGACATATAT--GTAGTTAATCCAGCAACACGTTGGTTCCGACAACT 482
|| ||||| || || ||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 365 CCACAAAATCA-GAG-TTTATATGGGTAGTTAATCCGGCCACACGGTGGTTTAGACAACT 422
Query 483 TCCTCCGGCTAGGTTTCAGATCTTT 507
||||||||||||||||||||| |||
Sbjct 423 TCCTCCGGCTAGGTTTCAGAT-TTT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5