BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12880.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471441 jgi|Araly1|471441|fgenesh2_kg.1__1395__AT1G12880.1 1295 0.0
Ahg936378 jgi|Araly1|936378|scaffold_500569.1 492 2e-138
> Ahg471441 jgi|Araly1|471441|fgenesh2_kg.1__1395__AT1G12880.1
Length=931
Score = 1295 bits (701), Expect = 0.0
Identities = 879/959 (92%), Gaps = 35/959 (4%)
Strand=Plus/Plus
Query 7 CTCGTTGGTACAACTCCTCATTCTTCTCCGCAAAAATAGCAAGTTATTTAAC------AA 60
||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||
Sbjct 1 CTCGTTGGTACAACTCCTCATTCGTCTCCGCAAAAATAGCAAGTTCTTAAACAAGAAAAA 60
Query 61 ACaaaaaaaTTCATATAAACGATTTTAtttttttGTGACTTT-TGAGATTCGTTAATTCT 119
| ||||||| |||||| |||||||||| ||| | |||| ||| ||||||||||||||||
Sbjct 61 AAAAAAAAACTCATATTAACGATTTTA-TTTCTCGTGAGTTTGAGAGATTCGTTAATTCT 119
Query 120 GGAAAATTTGTTTATTTTCAAAACAAGAATATGGATTCGTCATAAAAGCTAGGCTATGAT 179
||||| ||||||||||||||||| ||||| | || | | || | | | |||
Sbjct 120 GGAAAGTTTGTTTATTTTCAAAAGAAGAAGA-AGA-T-G-GAT------TCGTC-ATG-- 166
Query 180 CAACATGTTTCATACAAACAAGAACAGGGCTTTTCAAGAAAGTAGCATTCTCTGTTTCTG 239
|| | | | | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 167 -AA-A-G---C-T---AACAAGAACAGGGCTTTTCAAGAACGTAGCATTCTCTGTTTC-- 214
Query 240 TTGTCTCAATCCCTTTTGAttttttttGTGTTGGCAGATTCATCAAATGTCGGTTCTTTC 299
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 215 -TGTCTCAATCCCTTTTGA-TTTTTTTGTGTTCGCAGATTCATCAAATGTCGGTTCTTTC 272
Query 300 TTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCCGTCTCGTTTCTGGATG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCCGTCTCGTTTCTGGATG 332
Query 360 CATTCCTTATAGGCTGATGAAAGCTGACGAAACTGAAGAAGACTCAGGTGTTGACTTTGT 419
||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 333 TATTCCTTATAGGCTGATTAAAGCTGACGAAATTGAAGAAGACTCAAGTGTTGACTTTGT 392
Query 420 AAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTCATGATCTTGTCTTCCCAAA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTCATGATCTTGTCTTCCCAAA 452
Query 480 GGGAGGATGGGAAGATGATGAGACTGTTCTTGAAGCTGCTTCTCGTGAAGCCATTGAAGA 539
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 453 GGGAGGGTGGGAAGATGATGAGACTGTTCTTGAAGCTGCTTCTCGTGAAGCAATTGAAGA 512
Query 540 AGCAGGAGTTAAAGGAATACTTAGAGAACTTCCTTTAGGAGTTTGGGAATTTAGAAGCAA 599
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 513 AGCAGGTGTTAAAGGAATACTTAGAGAAGTTCCTTTAGGAGTTTGGGAATTTAGAAGCAA 572
Query 600 AAGTAGCACAGTGGAGGATGAATGTTTAGGTGGATGTAAAGGATATATGTTTGCATTAAA 659
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 573 AAGTAGCACAGTGGAGGATGAATGTTTAGGTGGATGCAAAGGATATATGTTTGCATTAGA 632
Query 660 AGTTACCGAAGAACTCGAGGATTGGCCAGAGCGAAAGAATCGTGAACGAAGATGGTTGAC 719
|||||||||||||||||||||||||||||||||||||| || | || ||||||||||
Sbjct 633 GGTTACCGAAGAACTCGAGGATTGGCCAGAGCGAAAGAACCGCCAGCGGAGATGGTTGAA 692
Query 720 TGTTAAAGAAGCGTTGGAGCTTTGTCGGTATGAGTGGATGCAGAGAGCACTTGAAGAGTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TGTTAAAGAAGCGTTGGAGCTTTGTCGGTATGAGTGGATGCAGAGAGCACTTGAAGAGTT 752
Query 780 TTTGAGAGTAATGGAAGATGAAAGAAGATTGAGAACAGAGGAAGAGACAGTGCATGATTC 839
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 753 TTTGAGAGTAATGGAAGATGAAGGAAGATTGAGAACAGAGGAAGAGACAGTGCAGGATTC 812
Query 840 TTCAAAGCTAGAGGAGGAGAGTCAAATAGATCCTTGGTACTGTTTTGTAGTTAACTAGTT 899
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 813 TTCAAAGCTAGAGGAGGAGTGTCAAATAGATCCTTGGTACTGTTTTGTAGTTAATTAGTT 872
Query 900 TTTCATATTCTTTAGCTAACGTAAACAAATTGAAAAAATGAGAAGTAAAGTGACTGCAA 958
||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||
Sbjct 873 TTTCATATTCTTTAGCTAATGTAAAAAAATTGAAAACATGAGAAGTAAAGTGACTTCAA 931
> Ahg936378 jgi|Araly1|936378|scaffold_500569.1
Length=652
Score = 492 bits (266), Expect = 2e-138
Identities = 518/635 (82%), Gaps = 35/635 (6%)
Strand=Plus/Plus
Query 284 AAATGTCGGTTCTTTCTTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCC 343
|||||||| |||||| | | ||||||||||| | ||||||||| |||||||||||||
Sbjct 22 AAATGTCGAATCTTTCAGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTTCC 81
Query 344 GTCTCGTTTCTGGATGCATTCCTTATAGGCTGATGAAAGCTGACGAAACTGAAGAAGACT 403
|||| ||||||||||||||||| ||||||||| ||||| || | || ||||| ||||
Sbjct 82 GTCTTGTTTCTGGATGCATTCCCTATAGGCTGGTGAAA---GATG-AA--GAAGAGGACT 135
Query 404 ---CAGGTGTTGACTTTGTAAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTC 460
|| |||||||||||| |||||| ||| ||||||||||| |||||||||| ||||| |
Sbjct 136 CAACAAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCCAATCGAC 195
Query 461 ATGATCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAGACTGTTCTTGAAGCTGCTT 520
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 196 ACGATCTTGTCTTCCCTAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTT 255
Query 521 CTCGTGAAGCCATTGAAGAAGCAGGAGTTAAAGGAATACTTAGAGAACTTCCTTTAGGAG 580
|||||||||| || |||||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct 256 CTCGTGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGGG 315
Query 581 TTTGGGAATTTAGAAGCAAAAGTAGCACAGTGGAGGATGAATG-T--TTAGGTGG---AT 634
||||||||||||||||||| ||||||| |||| | ||| || | |||||||| ||
Sbjct 316 TTTGGGAATTTAGAAGCAAGAGTAGCAGTTTGGAAGCTGATTGCTGCTTAGGTGGTGGAT 375
Query 635 GTAAAGGATATATGTTTGCATTAAAAGTTACCGAAGAACTCG--AGGATTGGCCAGAGCG 692
| ||||| ||||||||||| ||| | |||| |||||||| | | || |||||||||
Sbjct 376 GCAAAGGTTATATGTTTGCGTTAGAGGTTAAGGAAGAACTTGCTAC-AT-GGCCAGAGC- 432
Query 693 AA-AGAATCGTGA-ACGAAGATGGTTGACTGTTAAAGAAGCGTTGGAGCTTTGTCGGTAT 750
|| | || || || | |||||||| ||| |||||||||||| ||||| || |||||||||
Sbjct 433 AAGATAACCGCGAGA-GAAGATGGCTGAATGTTAAAGAAGCTTTGGAACTGTGTCGGTAT 491
Query 751 GAGTGGATGCAGAGAGCACTTGAAGAGTTTTTGAGAGTAATGGAAGATGAAAGAAG-ATT 809
|||||||||||||| || |||||||||||| | |||||||||| ||| ||| ||| |
Sbjct 492 GAGTGGATGCAGAGCGCTCTTGAAGAGTTTCTAAGAGTAATGGCAGAAGAAGGAACCACA 551
Query 810 GAGAACAGAGGAAGA-GACAGTGC-ATG-ATTCTTCAAAGCTAGAGGAGGAGAGTCAAAT 866
|| | ||| | || | | | | ||| | |||| | |||||| || |||||||
Sbjct 552 AAGGA-AGACTCTCTTGCCATTTCCA-GCATT-T-CAAATC--GAGGAG-AGCGTCAAAT 604
Query 867 AGATCCTTGGTACTGTTTTGTAGT-TAACTAGTTT 900
|||||| ||||||| |||||||| ||||||||||
Sbjct 605 TGATCCTCGGTACTGCTTTGTAGTCTAACTAGTTT 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5