BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12890.1

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471442 jgi|Araly1|471442|fgenesh2_kg.1__1396__AT1G12890.1         857    0.0  


> Ahg471442 jgi|Araly1|471442|fgenesh2_kg.1__1396__AT1G12890.1
Length=671

 Score =  857 bits (464),  Expect = 0.0
 Identities = 611/678 (90%), Gaps = 26/678 (4%)
 Strand=Plus/Plus

Query  1    ATGTTGAAATCAAGTAACaagagaaaaagcaaagaagagaagaagttacaagaagggaag  60
            |||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct  1    ATGTTGAAATCAAGAAACAAGAGCAAAAGCAAACAAGAGAAGAAGTCACAAGAAGGGAAG  60

Query  61   TACCTTGGAGTGAGGAGACGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTT  120
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TACCTTGGAGTAAGGAGGCGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTT  120

Query  121  ACTAAAGAAAGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCATAT  180
            || |||||| |||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  121  ACGAAAGAACGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCCTAC  180

Query  181  GACGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACAAACTTCTTCTACACTGAA  240
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  GATGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACCAACTTCTTCTACACTGAA  240

Query  241  AACACCTCTTTAGAAAGACATCCACAACAGT-----C--T-TT--GGAGCCTCATATGAC  290
            |||||||||||| ||| ||| ||||||||||     |  | ||  || |||| |||||||
Sbjct  241  AACACCTCTTTAAAAACACAACCACAACAGTTGTTACAGTCTTTAGG-GCCTGATATGAC  299

Query  291  TTGGGGATCTTCTAGTCTCTGTCTTCTTCAAGATCAGCCTTTTGAAAACAACCATTTTGT  350
            |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct  300  TTGGGGATCTTCTAGTGTCTCTCTTCTTCATGATCAGCCTTTTGAAAACAACCATTTTGT  359

Query  351  TGCTGATCCTATCTCTTCTTCTTTTTCTCAAAAACAAGAGTCTTCTACCAATCTCACTAA  410
            | |||||||||||||||||| |||  ||||| |||||||||||||| |||||||||||||
Sbjct  360  TTCTGATCCTATCTCTTCTT-TTT--CTCAAGAACAAGAGTCTTCTGCCAATCTCACTAA  416

Query  411  CACTTTCTCACATTGTTATAATGATGGTGATCATGTTGGCCAAAGCAAAGAGATTTCTTT  470
            | ||||||||||||||||| | ||||   |||||||||| |||| |||||||||||||||
Sbjct  417  CTCTTTCTCACATTGTTATGACGATG---ATCATGTTGGTCAAAACAAAGAGATTTCTTT  473

Query  471  ACCT---------AATGATATGTCAAACAGTTTATTCGGTCATCAGGACAAAGTCGGTGA  521
             |||         |||||||||||||||||| ||||| || |||||||||||| ||||||
Sbjct  474  GCCTTCTTTGCCTAATGATATGTCAAACAGTCTATTCTGTAATCAGGACAAAGCCGGTGA  533

Query  522  ACATGACAATGCAGACCATATGAAGTTTGGCTCAGTTCTCAGCGACGAACCTCTCTGCTT  581
            | ||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||
Sbjct  534  AGATGACAATGCAGACCATATGAAGATTGGCTCAGTTCTCGGCGATGAACCTCACTGCTT  593

Query  582  TGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGACGATGC  641
             ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  594  CGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGGTGATGC  653

Query  642  TCCACAGTTTCTTATGTG  659
            ||| ||||||||||||||
Sbjct  654  TCCTCAGTTTCTTATGTG  671



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24208052295


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5