BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12900.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1 2265 0.0
Ahg484431 jgi|Araly1|484431|fgenesh2_kg.5__423__AT3G26650.1 1254 0.0
Ahg473747 jgi|Araly1|473747|fgenesh2_kg.1__3701__AT1G42970.1 442 4e-123
> Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1
Length=1348
Score = 2265 bits (1226), Expect = 0.0
Identities = 1312/1353 (97%), Gaps = 7/1353 (1%)
Strand=Plus/Plus
Query 118 ATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGGGTTTTTCTGAGTTCTCA 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGGGTTTCTCTGAGTTCTCA 60
Query 178 GGACTTCGAAACTCCTCTGCTCTTCCCTTTGCCAAGAGATCTTCTTCCGATGAGTTTGTT 237
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GGACTCCGAAACTCCTCTGCTCTTCCCTTTGCCAAGAAATCTTCTTCCGATGAGTTTGTT 120
Query 238 TCCTTCGTCAGTTTCCAAACTTCTGCAATGAGAAGCAATGGTGGATACAGGAAAGGGGTG 297
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 121 TCCTTCGTCAGTTTCCAAACTTCTGCAATGGGAAGCAATGGTGGATACAGGAAAGGAGTG 180
Query 298 ACCGAGGCCAAGATAAAGGTAGCCATCAATGGGTTCGGTAGGATTGGTAGGAACTTCTTG 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 ACCGAGGCCAAGATAAAGGTAGCCATCAGTGGGTTCGGTAGGATTGGTAGGAACTTCTTG 240
Query 358 AGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCGTTGTCATTAACGACACTGGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCGTTGTCATTAACGACACTGGT 300
Query 418 GGTGTTAAACAAGCATCACATCTCCTCAAATACGACTCAACTCTTGGAATCTTTGACGCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGTTAAACAAGCATCACATCTCCTCAAATACGACTCAACTCTTGGAATCTTTGACGCT 360
Query 478 GATGTCAAACCTTCAGGAGACT-CAGCTCTCTCTGTTGATGGAAAGATCATCAAGATTGT 536
|||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 361 GATGTCAAACCTTCTGGAGA-TGCAGCTCTCTCTGTCGATGGAAAGATCATCAAGATTGT 419
Query 537 ATCTGATCGTAACCCATCTAATCTCCCCTGGGGGGAACTAGGCATTGACTTAGTTATCGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 ATCTGATCGTAACCCATCTAATCTCCCCTGGGGGGAACTAGGCATTGACTTGGTTATCGA 479
Query 597 AGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAA 656
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 480 AGGAACCGGAGTGTTTGTTGACAGAGATGGTGCTGGAAAGCACCTTCAGGCTGGAGCCAA 539
Query 657 GAAGGTTCTTATCACTGCACCTGGAAAAGGTGACATCCCAACTTATGTCGTTGGTGTCAA 716
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GAAGGTTCTAATTACTGCACCTGGAAAAGGTGACATCCCAACTTATGTCGTTGGCGTCAA 599
Query 717 TGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTG 776
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TGCTGAACTTTATAGCCATGAAGATACAATCATCAGCAATGCGTCTTGTACTACTAACTG 659
Query 777 TCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGGGATCATAAAGGGTACAATGAC 836
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTCGGGATCATAAAGGGTACAATGAC 719
Query 837 AACTACTCACTCATACACTGGTGACCAAAGGTTGTTAGATGCGAGCCACCGTGATCTAAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACTACTCACTCATACACTGGTGACCAAAGGTTGTTAGATGCGAGCCACCGTGATCTAAG 779
Query 897 GAGAGCAAGAGCAGCAGCTTTGAACATTGTTCCAACATCTACAGGAGCAGCCAAAGCTGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGAGCAAGAGCAGCAGCTTTGAACATTGTTCCAACATCTACAGGAGCAGCCAAAGCTGT 839
Query 957 GGCTCTTGTGCTTCCTAACCTCAAAGGAAAACTTAACGGAATTGCATTGCGTGTGCCAAC 1016
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 840 GGCTCTTGTGCTTCCTAACCTCAAAGGAAAACTCAATGGAATCGCATTGCGTGTGCCAAC 899
Query 1017 TCCAAACGTTTCAGTGGTTGACTTAGTCGTGCAAGTCTCCAAGAAAACTTTTGCTGAAGA 1076
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 900 TCCAAACGTTTCAGTGGTTGACTTAGTCGTTCAGGTCTCCAAGAAGACTTTTGCTGAAGA 959
Query 1077 AGTCAATGCTGCTTTCAGAGATGCAGCTGAGAAAGAGCTTAAAGGTATCCTTGACGTCTG 1136
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 960 AGTCAATGCTGCTTTCAGAGATGCAGCTGAGAAAGAGCTTAAAGGTATACTCGACGTCTG 1019
Query 1137 TGATGAGCCTCTTGTCTCTGTTGACTTCAGGTGCTCTGATGTATCCTCCACTATTGATTC 1196
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 TGATGAGCCTCTTGTCTCTGTTGACTTCAGGTGCTCTGATGTATCCTCAACTATTGATTC 1079
Query 1197 TTCCCTCACAATGGTTATGGGAGATGATATGGTTAAAGTGATTGCTTGGTATGACAATGA 1256
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTCTCTCACAATGGTTATGGGAGATGATATGGTTAAAGTGATTGCTTGGTATGACAATGA 1139
Query 1257 ATGGGGTTACTCACAGAGAGTCGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTG 1316
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATGGGGTTACTCGCAGAGAGTCGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTG 1199
Query 1317 AAGACTCAACAACCTCTTGATGTCTGCTCCATTATTTTTT-ACTGTTACATGATTCGGAA 1375
|||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1200 AAGACTCAACT---T-TTGATGTCTGCTCCATTATTTTTTTACTGTTATATGATTCGGAA 1255
Query 1376 TGTATAATTGTAGTTCCTGAGTTTATTATGTATTTGTGCTCTATAATTTATAGTAATAAA 1435
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1256 TGTATAATTGTAGTTCCTGAGTTTATTATGTCTTTGTGCTCTATAAATTGTAGTAATAAA 1315
Query 1436 CTTGATTCAAACATATTACATCCTCTGCTTAAT 1468
|||||||||||||| ||||||||||||||||||
Sbjct 1316 CTTGATTCAAACATGTTACATCCTCTGCTTAAT 1348
> Ahg484431 jgi|Araly1|484431|fgenesh2_kg.5__423__AT3G26650.1
Length=1529
Score = 1254 bits (679), Expect = 0.0
Identities = 1139/1353 (84%), Gaps = 64/1353 (5%)
Strand=Plus/Plus
Query 1 AAAGCTATCCAGAATCTCATCTTCTTTGCCTCCAACTCAGCAATTCATATTTTCCTATAT 60
||||||||||||||||| ||||| ||||||||||| ||| |||||| | || ||||||||
Sbjct 22 AAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCATCAATTC-T-TTATCCTATAT 79
Query 61 TA-CAA-CTCT-C-T-GCC--T-C-TTCTGCT-TAC-ATC--ATACAA-C--AAGCTT-- 102
|| ||| |||| | | || | | || |||| | | || ||||| | || |||
Sbjct 80 TACCAATCTCTGCTTCACCAATCCTTTTTGCTCT-CTGTCTGCTACAACCTTAA-CTTGG 137
Query 103 -CTCTCTCTGGT-AGCCATGGCTTCGGC-TACTTTCTCTGTGGCCAAACCATCTCTTCAG 159
||| |||||| | |||||||||| || |||||||||||| | | ||| ||
Sbjct 138 ATTCTTTCTGGTCA-CCATGGCTTC-GCTTACTTTCTCTGT-G-C---CCA-------AG 183
Query 160 GGTTTTTCTGAGTTCTCAGGACTT-CGAAACTCCTCTGC---TCTTCCCTTTGCCAAGAG 215
||||| |||| ||||||||| || |||| ||||||||| ||||||||||| |||||
Sbjct 184 GGTTTCACTGAATTCTCAGGA-TTGCGAAGCTCCTCTGCTTGTCTTCCCTTTGGCAAGA- 241
Query 216 ATC-TTCTTCCGATGAGTTTGTTTCCTTCGTCAGT--TTCCAAACTTCTGCAATGAGAAG 272
| | |||||||||||||||||||||| |||| | | ||||| |||||||||||| ||||
Sbjct 242 AACTTTCTTCCGATGAGTTTGTTTCCATCGT-A-TCCTTCCAGACTTCTGCAATGGGAAG 299
Query 273 CAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAGGTAGCCATCAATGGGTT 332
|| |||||||||||||||||| ||||| ||||||||| | ||||| ||||||||||| ||
Sbjct 300 CAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATCAATGGATT 359
Query 333 CGGTAGGATTGGTAGGAACTTCTTGAGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGA 392
|||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 360 CGGTAGGATTGGGAGGAACTTCTTGAGATGTTGGCATGGTCGCAAAGACTCTCCTCTTGA 419
Query 393 TGTCGTTGTCATTAACGACACTGGTGGTGTTAAACAAGCATCACATCTCCTCAAATACGA 452
| || ||| |||||| ||||||||||| || || || || || |||||||| ||||||||
Sbjct 420 TATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCCCATCTCCTTAAATACGA 479
Query 453 CTCAACTCTTGGAATCTTTGACGCTGATGTCAAACCTTCAGGAGACTCAGCTCTCTCTGT 512
||| ||||| ||||||||||| ||||||||||||||||| ||||| | || |||||||
Sbjct 480 CTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTGT 539
Query 513 TGATGGAAAGATCAT-CAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGG 571
||||||||||||||| |||| |||| ||| | || ||||| ||| |||||||||| ||
Sbjct 540 TGATGGAAAGATCATCCAAG-TTGTTTCTAACCGAAACCCGTCTCTTCTCCCCTGGAAGG 598
Query 572 AACTAGGCATTGAC-TTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCT 630
| |||| |||||| || || ||||||||||||||||||||||| || ||||| |||||
Sbjct 599 AGTTAGGAATTGACATT-GTCATCGAAGGAACCGGAGTGTTTGTCGATAGAGAAGGTGCA 657
Query 631 GGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATCACTGCACCTGGAAAAGGTGAC 690
||||| ||| || | |||||||||||||||||| | || || || || || ||||| ||
Sbjct 658 GGGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACCGCTCCAGGGAAAGGAGAT 717
Query 691 ATCCCAACTTATGTCGTTGGTGTCAATGCTGA-ACTTTACAGCCATGAAGATA-CGATCA 748
|| |||||||| ||||||||||||||||| || | |||||| ||||| || | | ||||
Sbjct 718 ATTCCAACTTACGTCGTTGGTGTCAATGCAGATGC-TTACAGTCATGATGA-ACCAATCA 775
Query 749 TCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGA 808
|||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 776 TCAGCAATGCATCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGA 835
Query 809 AATTTGGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGGT 868
||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct 836 AATTTGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGT 895
Query 869 TGTTAGATGCGAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTTC 928
|| |||| || || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 TGCTAGACGCAAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTC 955
Query 929 CAACATCTACAGGAGCAGCCAAAGCTGTGGCTCTTGTGCTTCCTAACCTCAAAGGAAAAC 988
| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 956 CTACATCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAGGGAAAAC 1015
Query 989 TTAACGGAATTGCAT-TGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCGT 1046
| |||||||| || | | ||||| || || |||||||| ||||| ||||| || || ||
Sbjct 1016 TCAACGGAATCGC-TCTCCGTGTACCTACACCAAACGTATCAGTCGTTGATCTC-GTTGT 1073
Query 1047 GCAAGTCTCCAAGAAAACTTTTGCTGAAGAAGTCAATGCTGCTTTCAGAGATGCAGCTGA 1106
||| || || ||||||||||||||||| ||||| || ||||||||||||||| | |||||
Sbjct 1074 GCAGGTTTCAAAGAAAACTTTTGCTGAGGAAGTTAACGCTGCTTTCAGAGATTCTGCTGA 1133
Query 1107 GAAAGAGCTTAAAGGTATCCTTGACGTCTGTGATGAGCCTCTTGTCTCTGTTGACTTCAG 1166
||||||||||||||| || || || ||||| |||||||| || || || ||||| |||||
Sbjct 1134 GAAAGAGCTTAAAGGAATACTCGATGTCTGCGATGAGCCACTAGTGTCAGTTGATTTCAG 1193
Query 1167 GTGCTCTGATGTATCCTCC-ACTATTGATTCTTCCCTCACAATGGTTATGGGAGATGATA 1225
||||| ||| ||| | | || |||||||| || ||||| |||||||||||||||||||
Sbjct 1194 ATGCTCAGAT-TATTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATA 1252
Query 1226 TGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGAGTCGTTGATT 1285
||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1253 TGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACT 1312
Query 1286 TGGCTGACATTGTTGCCAATAACTGGAAGTGAA 1318
||||||||||||||||||| |||||||||||||
Sbjct 1313 TGGCTGACATTGTTGCCAACAACTGGAAGTGAA 1345
> Ahg473747 jgi|Araly1|473747|fgenesh2_kg.1__3701__AT1G42970.1
Length=1758
Score = 442 bits (239), Expect = 4e-123
Identities = 781/1032 (76%), Gaps = 79/1032 (8%)
Strand=Plus/Plus
Query 303 GGCCAAGA-TAAAGGTAGCCATCAATGGGTTCGGTA-GGATTGGTAGGAACTTCTTGAGG 360
|||||| | | ||||| || || || |||||||| | ||||||||||||||||| | |||
Sbjct 403 GGCCAA-ACTGAAGGTTGCGATTAACGGGTTCGG-ACGGATTGGTAGGAACTTCCTCAGG 460
Query 361 TGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCGTTGT-CATTAACGACACTGGTGG 419
||||||||||||||||||||||||||||| || || ||||| | |||| |||| ||||||
Sbjct 461 TGTTGGCATGGTCGTAAGGACTCTCCTCTCGAAGTTGTTGTGC-TTAATGACAGTGGTGG 519
Query 420 TGTTAAACAA-GCATCACATCTCCTCAAATACGACTCAACT-CTTGGAATCTTTGACGCT 477
|| | || || ||||| ||| | ||||| || ||||| | | ||||||| ||| | |||
Sbjct 520 TG-TCAAGAATGCATCCCATTTGCTCAAGTATGACTCCA-TGCTTGGAACCTTCAAGGCT 577
Query 478 GATGTCAAACCTTCAGGAGACT-CAGCTCTC-TCTGTTGATGGAAAGATCATC-AAGATT 534
|| || ||| || ||| | | | || || | |||||||| ||| ||||| ||| ||
Sbjct 578 GAAGTGAAA-ATTGTGGACAATGAAACTATCAGC-GTTGATGGTAAGCTCATCAAAG-TT 634
Query 535 GTATCTGATC-GTA-ACCCATC-TAATCTCCCCTGGGGGGAACTAGGCATTGAC-TTAGT 590
|| || | | | | |||| || ||| || || |||| || || ||||||||| || ||
Sbjct 635 GTCTC-CAACAG-AGACCC-TCTTAAGCTTCCATGGGCTGAGCTCGGCATTGACATT-GT 690
Query 591 TATCGAAGGAACCGGAGTGTTTGTTGACAGAGAC-GGTGCTGGGAAGCACCTTCAGGCTG 649
|||||| ||||| |||||||||||||| | | | || || |||||||| | || ||||
Sbjct 691 TATCGAGGGAACAGGAGTGTTTGTTGA-TGGGCCAGGAGCAGGGAAGCATATCCAAGCTG 749
Query 650 GAGCCAAGAAGGTTCTTATCACTGCACCTG-GAAAAG-G-TGACATCCCAACTTATGTCG 706
||||| ||| || | ||||||||||| | ||| | | ||| ||||| || ||||| |
Sbjct 750 GAGCCTCGAAAGTGATCATCACTGCACCAGCCAAAGGTGCTGATATCCCTACCTATGTTG 809
Query 707 TTGGTGTCAAT--GCTGA-ACT-T--TACAGCCATGAAGAT-ACGATCATCAGCAATGCG 759
| || |||||| || | ||| | | || | | | | | || ||||| ||||||||
Sbjct 810 TGGGCGTCAATGAGC-AAGACTATGGT-CA-CGACGTCGCTAAC-ATCATTAGCAATGCA 865
Query 760 TCTTGTACTACTAACTGTCTCGCTCCATTCGTC-AAGGTTCTT-GA-CCAGAAATTTGGG 816
||||| || || || ||| | || || || | | || | |||| || || |||||||
Sbjct 866 TCTTGCACCACCAATTGTTTGGCACCCTTTG-CTAAAG-TCTTGGATGAAG-AATTTGGT 922
Query 817 ATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGG-TTGTTAGA 875
||| | ||||| ||||||||||| || ||||| ||||| || ||||||||| || ||||
Sbjct 923 ATCGTCAAGGGAACAATGACAACCACACACTCTTACACCGGAGACCAAAGGCTT-CTAGA 981
Query 876 TGCGAGC-CACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTTCC-AACA 933
||| | | ||| | || |||||| | |||||||| ||||| ||||||| || || | ||
Sbjct 982 TGC-ATCACACAGGGACCTAAGGCGTGCAAGAGCCGCAGCACTGAACATAGTGCCTACCA 1040
Query 934 TCTACAGGAGCAGCCAAAGCTGTGGCTC-TT-GTGCTT-CCTAACCTCAAAGGAAAACTT 990
| ||||| |||||||| || | | ||| || ||| || || | || || || |||||
Sbjct 1041 GC-ACAGGTGCAGCCAAGGC-G-GTCTCATTAGTG-TTGCCGCAGCTGAAGGGTAAACTC 1096
Query 991 AACGGAATTGCATTGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCGTGCA 1049
||||| |||||| | ||||||||||| |||||||| ||||||||||| ||| || | |
Sbjct 1097 AACGGGATTGCACTCCGTGTGCCAACACCAAACGTCTCAGTGGTTGACCTT-GTTAT-AA 1154
Query 1050 A-GTCT-CCAAGAAAACTTTTG-CTG-A-A-GAAGTCAATGCTGCTTTCAGAGATGCAGC 1103
| || | ||| ||| |||| | | | | || || || | || |||||| | || ||
Sbjct 1155 ACGT-TGAGAAG-AAAGGTTTGACAGCAGAGGACGTGAACGAGGCCTTCAGAAAAGCCGC 1212
Query 1104 TGAGAAAGA--GCTTAAAGGTATCCTT-GACGTCTGTGATGAGCCTCTTGTCTCTGTTGA 1160
| | | || | | ||||| || || ||||| ||||| | |||||||||||||||||
Sbjct 1213 T-A-ATGGACCGATGAAAGGCAT-TTTAGACGTTTGTGACGCCCCTCTTGTCTCTGTTGA 1269
Query 1161 CTTCAGGTGCTCTGATGTATCCT-CCACTATTGATTCTTCCCTCACAATGGTTATGGGAG 1219
|||||||||||||||||| || | |||| ||||||||||||||||| ||||||||||| |
Sbjct 1270 CTTCAGGTGCTCTGATGTCTC-TACCACCATTGATTCTTCCCTCACTATGGTTATGGGTG 1328
Query 1220 ATGATATGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACT-CACAGAGAGTC 1278
|||||||||| || ||| ||||||||||||| || || ||||||||| | || |||||
Sbjct 1329 ATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTACAGC-CAAAGAGTA 1387
Query 1279 GTTGATTTGGCT 1290
|| |||||||||
Sbjct 1388 GTGGATTTGGCT 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5