BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12910.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920156 jgi|Araly1|920156|scaffold_101437.1 1884 0.0
Ahg484430 jgi|Araly1|484430|fgenesh2_kg.5__422__AT3G26640.1 1122 0.0
> Ahg920156 jgi|Araly1|920156|scaffold_101437.1
Length=1104
Score = 1884 bits (1020), Expect = 0.0
Identities = 1076/1104 (97%), Gaps = 0/1104 (0%)
Strand=Plus/Plus
Query 96 GGAGGCGATTTTCTAGGGTTTTTGCTCGGAATCGATTTCACGATGGGAACGAGCAGCGAT 155
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GGAGGCGATTTTCTAGGGTTTTTGCTCGGATTCGATTTCACGATGGGAACGAGCAGCGAT 60
Query 156 CCGATTCAAGATGGTTCCGATGAGCAGCAGAAGCGATCAGAGATCTATACATACGAAGCG 215
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 61 CCGATTCAAGATGGTTCCGATGAGCAGCAGAAACGTTCAGAGATCTACACATACGAAGCT 120
Query 216 CCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTATCGTCTCGCC 275
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTACCGTCTCGCC 180
Query 276 ATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCC 240
Query 336 AATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTATCCACCAACGAAG 395
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTACCCACCAACGAAG 300
Query 396 ACCATTTTCATACCTGACAAGGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGAT 455
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCATTTTCATCCCTGATAAAGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGAT 360
Query 456 TTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTC 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTC 420
Query 516 AATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAATGAAGCT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 AATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAACGAAGCT 480
Query 576 GAGCCACGTCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAG 635
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGCCACGCCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAG 540
Query 636 CGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGG 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGG 600
Query 696 GGTGGTGTTGGTGTTTTTGCATCTGTTTCAGCTGATGGCTCCGTTAGGGTGTTTGATCTT 755
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GGTGGTGTTGGTGTTTTTGCCTCTGTTTCAGCTGATGGTTCCGTTAGGGTGTTTGATCTT 660
Query 756 CGTGATAAGGAACATTCGACGATTATCTATGAGAGCTCCGAGCCTGATACTCCTTTAGTG 815
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 661 CGTGATAAAGAACATTCGACGATTATCTATGAGAGCTCTGAGCCTGATACTCCTTTGGTG 720
Query 816 CGTCTTGGTTGGAACAAACAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCT 875
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTCTTGGTTGGAACAAGCAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCT 780
Query 876 AAAGTTGTGGTGCTTGACATTCGTTTTCCGGCTCTTCCTGTGGTTGAGCTTCAACGACAT 935
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 781 AAAGTTGTGGTGCTCGACATTCGTTTTCCGGCTCTTCCTGTTGTGGAGCTTCAACGACAT 840
Query 936 CAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCT 900
Query 996 GGAGATGATTCTCAAGCTTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGT 1055
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGAGATGATTCTCAAGCCTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGT 960
Query 1056 GGTCTTGACCCTATTCTAGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAGTGGTCC 1115
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GGTCTTGACCCTATTCTCGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAATGGTCC 1020
Query 1116 TCTTCTCAGCCTGATTGGGTCGCAATTGCTTTCTCTACTAAGCTGCAAATTCTCAGGGTT 1175
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1021 TCTTCTCAGCCTGATTGGGTCGCCATTGCTTTCTCCACCAAGCTGCAAATTCTCAGGGTT 1080
Query 1176 TGATCTTTTCAAAGAATTTCTCAT 1199
||||||||| ||||||||||||||
Sbjct 1081 TGATCTTTTAAAAGAATTTCTCAT 1104
> Ahg484430 jgi|Araly1|484430|fgenesh2_kg.5__422__AT3G26640.1
Length=1115
Score = 1122 bits (607), Expect = 0.0
Identities = 926/1081 (86%), Gaps = 17/1081 (2%)
Strand=Plus/Plus
Query 107 TCTAGGGTTTTTGCTCGGAATCGATTTC-ACGATGGGAACGAGCAGCGATCCGATTCAAG 165
|||||||||| |||| ||||| | || |||| |||||||||||||| || |||
Sbjct 24 TCTAGGGTTTATGCT-TTCATCGA-AGCAACAATGGTAACGAGCAGCGATCAAATCCAAA 81
Query 166 ATGGTTCCGATGAGC-AGCAGAAGCGATCAGAGATCTATACATACGAAGCGCCATGGCAC 224
||||||||||||||| | || || |||||||||| || ||||||||||| ||||||||
Sbjct 82 ATGGTTCCGATGAGCAATCA-AAAAGATCAGAGATTTACACATACGAAGCACCATGGCAG 140
Query 225 ATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTATCGTCTCGCCATCACTAGC 284
||||||||||||||||||||| ||||||| || ||||||||||| ||||| ||||| |||
Sbjct 141 ATCTACGCAATGAATTGGAGCATTCGTCGAGACAAGAAGTATCGACTCGCAATCACAAGC 200
Query 285 CTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCCAATGGTGAG 344
||| |||||||||| || || || ||||| ||||| ||||| |||||||| |||||||||
Sbjct 201 CTCATCGAGCAATATCCAAATCGCGTCGAAATTGTTCAGCTTGATGAATCAAATGGTGAG 260
Query 345 ATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTATCCACCAACGAAGACCATTTTC 404
|| || || ||||| || || | ||| ||||||||||| ||||||||||| |||| ||||
Sbjct 261 ATTCGATCAGATCCAAATCTTTGCTTCGAGCATCCTTACCCACCAACGAAAACCAGTTTC 320
Query 405 ATACCTGACAAGGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGATTTCCTTCGT 464
|| || || || ||||| |||||||| |||||| | |||||||| |||||||| ||||||
Sbjct 321 ATTCCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTACTTCTAGTGATTTTCTTCGT 380
Query 465 TTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTCAATAGCAAT 524
|||||| ||||| |||||||| | || ||||||||||| | |||||||| | ||| ||
Sbjct 381 TTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTAGGTCTTGTCTTAGTAGTGAT 440
Query 525 AAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAATGAAGCTGAGCC-ACG 583
||||| | ||||||| |||||||| ||||||| ||||||||||||||||||||||| | |
Sbjct 441 AAGAATAATGAGTTTAGTGGTCCTATTACTTCATTTGATTGGAATGAAGCTGAGCCTA-G 499
Query 584 TCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAGCGTGAAGC 643
|||||||| || ||||||| |||||||||||||||||| ||||| || ||||||||||
Sbjct 500 ACGAATTGGGACTTCTAGTATTGATACGACTTGTACTATTTGGGATATAGAGCGTGAAGT 559
Query 644 TGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGGGGTGGTGT 703
|||||||||||||||||||||||||||||| || |||| ||| |||||||||||||| ||
Sbjct 560 TGTTGATACTCAGCTTATTGCTCATGATAAAGAGGTTTATGACATTGCTTGGGGTGGAGT 619
Query 704 TGGTGTTTTTGCATCTGTTTCAGCTGATGGCTCCGTTAGGGTGTTTGATCTTCGTGATAA 763
||||||||| || |||||||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 620 TGGTGTTTTCGCCTCTGTTTCAGAAGATGGTTCCGTTAGAGTGTTCGATCTCCGTGATAA 679
Query 764 GGAACATTCGACGATTATCTATGAGAGCT-CCGAGCCTGA-TACTCCTTTAGTGCGTCTT 821
||| ||||||||||||||||||||||| | |||||| || ||||||||| |||||||||
Sbjct 680 GGAGCATTCGACGATTATCTATGAGAG-TGGCGAGCC-GAGTACTCCTTTGGTGCGTCTT 737
Query 822 GGTTGGAACAAACAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCTAAAGTT 881
||||||| || |||||||| ||||| ||||||||| ||||||||| |||||||||| ||
Sbjct 738 AGTTGGAATAAGCAGGATCCGAGGTATATGGCTACTGTTATCATGGGCAGTGCTAAAATT 797
Query 882 GTGGTGCTT-GACATTCGTTTTCCGGCTCTTCCTGTGGTTGAGCTTCAACGACATCAAGC 940
|| ||| || || ||||| ||||||||||||||||| || |||||||| |||||||| ||
Sbjct 798 GTTGTG-TTGGATATTCGGTTTCCGGCTCTTCCTGTTGTGGAGCTTCAGCGACATCAGGC 856
Query 941 TAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCTGGAGA 1000
|||||||||||| || |||||||||||||||||||||| || ||||| |||||||| ||
Sbjct 857 TAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCATATTTGCACTGCTGGTGA 916
Query 1001 TGATTCTCAAGCTTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGTGGTCT 1060
||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 917 TGATTCTCAGGCGTTGATTTGGGATATTTCTTCGATGGGACAGCATGTTGAAGGTGGT-T 975
Query 1061 TG-ACCCTATTCTAGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAGTGGTCCTCTT 1119
|| | || ||||| |||||||| || || |||||| |||||||||| || ||||| ||||
Sbjct 976 TGGATCCGATTCTGGCTTACACAGCCGGCGCTGAGGTTGAGCAGCTGCAATGGTCTTCTT 1035
Query 1120 CTCAGCCTGATTGGGTCGCAATTGCTTTCTCTA-CTAAGCTGCAAATTCTCAGGGTTTGA 1178
| |||||||||||||| || ||||| ||||||| | |||||||| ||||||||||| |||
Sbjct 1036 CCCAGCCTGATTGGGTTGCCATTGCCTTCTCTAAC-AAGCTGCAGATTCTCAGGGTCTGA 1094
Query 1179 T 1179
|
Sbjct 1095 T 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5