BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12940.1

Length=1762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905795 jgi|Araly1|905795|Al_scaffold_0003_2923                    189    6e-47


> Ahg905795 jgi|Araly1|905795|Al_scaffold_0003_2923
Length=258

 Score =  189 bits (102),  Expect = 6e-47
 Identities = 112/117 (96%), Gaps = 0/117 (0%)
 Strand=Plus/Plus

Query  505  GCTAACGGAATCGCCGCCGGGTGGGGTAACCTCGGAGGAGGCGCGACGCAGCTGATCATG  564
            |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  142  GCTAACGGAATCGAGGCCGGGTGGGGTAACCTCGGAGGAGGTGCGACGCAGCTGATCATG  201

Query  565  CCCATCGTGTTCTCGTTGATTCGTAATATGGGAGCCACCAAGTTCACCGCGTGGAGG  621
            ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  202  CCCATCGTGTTCTCGTTGATTCGGAATATGGGAGCCACCAAGTTCACGGCGTGGAGG  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66124665320


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5