BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12970.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471451 jgi|Araly1|471451|fgenesh2_kg.1__1405__AT1G12970.1 2185 0.0
Ahg484411 jgi|Araly1|484411|fgenesh2_kg.5__403__AT3G26500.1 579 3e-164
> Ahg471451 jgi|Araly1|471451|fgenesh2_kg.1__1405__AT1G12970.1
Length=1464
Score = 2185 bits (1183), Expect = 0.0
Identities = 1378/1471 (94%), Gaps = 18/1471 (1%)
Strand=Plus/Plus
Query 55 TCTCAAAAGCTCTCATCTTCAATCTCATTGAGA-ATGGATCATGATCTCGAGATCTTCCC 113
|||||||||||||||||||||||||| | || | |||||||||||||| |||||||||||
Sbjct 1 TCTCAAAAGCTCTCATCTTCAATCTCGTAGA-ACATGGATCATGATCTAGAGATCTTCCC 59
Query 114 TTTACTCTCCTACGTCCTCCACCATTCCGATCCCGCTTCTCACGCGCCACCGTCT-CTAG 172
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 60 TTTGCTCTCCTACGTCCTCCACCATTCCGATCCTGCTTCTCACGCGCCACCGTCTCCGA- 118
Query 173 CGATTCAGCAATCTCTTGCGAATCGTTATCCCCTTCTCACCAATCCTTATGTAATCTCCT 232
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 CGATTCAGCAATCTCTAGCGAATCGTTATCCCCTTCTCACCAATCCATATGTAATCTCCT 178
Query 233 CGTTGATTGAATCAATTCCCAGTACAATCACGCAGACCCTTTTCGTATTTGGCTCTCTTG 292
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 179 CGTTGATTGAATCAATTCCCAGTACAATCACGCAGACCCTTTACGTATTCGGCTCTCTTG 238
Query 293 GGCCACGACCTGATCCTTTAGCTGTCTCTTCTGCTCGGTCTAAGATCCG-AGAGATCAAA 351
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
Sbjct 239 GGCCACGACCTGATCCTTTAGCTGTCTCTTCTGCTCGGTCCAAGAT-CGCTGAGATCCGA 297
Query 352 GAGAATGATTCTTTATCGCCGGAAGATGCGGCTAAGGAAGAGCAGGTTTACGCTGCGGTT 411
||||||||||| || || ||||| |||||||||||||||||||||||||||| | ||||
Sbjct 298 GAGAATGATTCGTTGTCTCCGGAGGATGCGGCTAAGGAAGAGCAGGTTTACGTTACGGTG 357
Query 412 GTGAGTTTAGAGGAAGTTCATGAAGGATATGAGAAGCAGTTAAGAGATTTGGAGGAGGAG 471
||||| ||||||||||||||||||||||| |||||||| || || |||||||||||||||
Sbjct 358 GTGAGGTTAGAGGAAGTTCATGAAGGATACGAGAAGCAATTGAGGGATTTGGAGGAGGAG 417
Query 472 ATTG-GTAGGGTTTATGCTTCGGCGGTTGAATCATTGAGCGGTGGTGATGAAGTGAATGA 530
|| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 418 -CTGTGTAGGGTTTATGCTTCGGCGGTTGAATCCTTGAGCGGTGGCGATGAAGTGAATGA 476
Query 531 GGAGGTTTTAGCGGTGATTAAAGACGCTGAAGATGGTGGAGTCGTTGAAAGGATTGATCT 590
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 477 GGAGGTTTTAGCGGTGATTAAGGAAGCTGAAGATGGTGGAGTCGTTGAGAGGATTGATCT 536
Query 591 TTCTGATCATGAGCTTAAGCTTCTTCCTGATGCTTTAGGGAAAATCGTCGGTTTGGTTTC 650
||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 537 CTCTGATCGTGAGCTTAAGCTTCTTCCTGATGCTTTAGGGAAAATCGTTGCTTTGGTTTC 596
Query 651 ACTGAATGTCTCTCGTAACAATCTCAGGTTTCTACCTGATACAATCTCAGGACTTGAGAA 710
||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 597 ACTGAATCTTTCTCGTAACAATCTCAAGTTCCTACCTGATACAATCTCAGGACTTGAGAA 656
Query 711 ACTGGAGGAGCTAGATTTATCTTCAAACCGTCTCGTGTTTCTTCCCGACTCTATTGGACT 770
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 657 ACTGGAGGAGCTAGATTTATCTTCAAACCGTCTAGTGTCTCTTCCCGACTCTATCGGACT 716
Query 771 GTTACTTAATTTGAGGATCTTAAATGTGACGGGGAACAAGCTAACTTTACTCCCAGAAAG 830
|||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 717 GTTACTTAATCTGAGGATCTTAAATGTGACGGGCAACAAGCTAACTTCACTCCCAGAAAG 776
Query 831 CATTGCGCAATGCAGGTCACTGGTAGAGTTAGATGCCAGCTTCAACAACTTGACTTCTTT 890
||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 777 CATTGCGCAGTGCAGGTCATTAGTTGAGTTAGATGCCAGCTTCAACAACTTGACTTCTTT 836
Query 891 GCCTGCAAACTTCGGATACGGATTACTCAATCTCGAAAGGCTATCGATCCAGCTGAACAA 950
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 GCCTGCAAACATCGGATACGGATTACTCAATCTCGAAAGGCTATCAATCCAGCTGAACAA 896
Query 951 AATCCGTTTCTTCCCCAATTCCATATGTGAGATGCGTTCTCTAAGGTATCTCGACGCACA 1010
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 897 AATCCGTTTCTTCCCCAATTCCATGTGTGAGATGCGTTCTCTAAGGTATATAGACGCACA 956
Query 1011 CATGAACGAAATCCACGGCCTTCCAATCGCTATAGGGAGACTCACAAACCTTGAAGTCAT 1070
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 957 CATGAACGAAATCCACGGCCTTCCAATCGCTATAGGGAGACTCACAAGCCTTGAAGTAAT 1016
Query 1071 GAACTTGAGCAGCAACTTCAGCGACTTGATTGAACTTCCTGACACAATCTCTGATTTAGC 1130
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1017 GAACTTGAGCAGCAACTTCAGCGACTTGACCGAACTTCCTGACACAATCTCTGATTTAGC 1076
Query 1131 TAACTTGAGGGAGCTAGATCTCAGCAACAACCAGATCAGAGTCTTGCCTGACTCGTTTTT 1190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 TAACTTGAGGGAGCTAGATCTCAGCAACAACCAGATCAGAGTCTTGCCTAACTCGTTTTT 1136
Query 1191 CAGGCTGGAGAAGCTGGAGAAACTGAACTTGGACCAGAACCCTTTGGAGTATCCCCCACA 1250
||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct 1137 CAGATTGGAGAAGCTGGAGAAACTGAACTTGGACCAGAACCCATTGGAGTTTCCTCCACA 1196
Query 1251 AGAGATGGTTAACCAAAGCGCTGAAGCAGTTCGAGAGTTCATGAGGAAGAGGTGGGAAGA 1310
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1197 AGAGATGGTTAACCAAAGCGCTGAAGCGGTTCGAGAGTTCATGAGGAAGAGATGGGAAGA 1256
Query 1311 GATGGTGGAGGAAGAGCAATTGAGGAGTGTGATTGAAGCTGAGAAGCAACAAGGAGGAGC 1370
||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1257 GATGGTGGAGGAAGAGCAATTGAGGAGTGTGATAGAAGCTGAGAAGCAAC--G-AGGAGC 1313
Query 1371 AACAGGTTGGCTCTCATGGGGGAGCTCCATTGTTACTAGCCTTTTCTCTGGAGGTACTCA 1430
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1314 AACAGGTTGGCTCTCATGGGGAAGCTCCATTGTTACTAGCCTTTTTTCTGGAGGTGCTCA 1373
Query 1431 TGGTGGTGCAGCTAAGAAGCCTAAAAACTCATTTTTGGATGAACAGCTCTGA-tttttt- 1488
|| |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 1374 TGTTGGTGCAGCTAAGAAGCCTAAAGACTCATTTTTGGATGAACAACTCTGAATTTTTTA 1433
Query 1489 --tt-tttt-t-GGCTTTACTATATCTAGCT 1514
|| |||| | |||||| ||||||||||||
Sbjct 1434 AATTCTTTTGTTGGCTTTGCTATATCTAGCT 1464
> Ahg484411 jgi|Araly1|484411|fgenesh2_kg.5__403__AT3G26500.1
Length=1449
Score = 579 bits (313), Expect = 3e-164
Identities = 1031/1366 (75%), Gaps = 96/1366 (7%)
Strand=Plus/Plus
Query 88 ATGGATCATGATCTCGAGATCTTCCCTTTACTCTCCTACGTCCTCCACC-A-TTCCGATC 145
|||||||| |||||||| | |||||||||||||| || ||||| |||| | || || |
Sbjct 21 ATGGATCACGATCTCGACAAATTCCCTTTACTCTCTTATGTCCTTCACCAACTT--GA-C 77
Query 146 -CCGCTTCT-CACGCGCCACCGTCTCTAGC-GATTC-AGCAA-TCT-CTTGCGAATCGTT 199
|| ||| |||||||| |||||| | || | | || || ||| ||| | || ||
Sbjct 78 TCC-AATCTCCACGCGCCGCCGTCTATGGCTG-CGCAAGAAACTCTCCTT-C-CTTC-TT 132
Query 200 ATCCCCTTCTCACCAATCCTTATGTAATCTCCTCGTTGATTGAATCAATTCCCAGTACAA 259
||| |||||| || ||||| | || || || || |||| | |||| || |||| || |
Sbjct 133 TTCCTCTTCTCTCCGATCCTCAAGTCATGTCTTCTTTGACTCAATCCATCCCCACCACCA 192
Query 260 TCACGCAGACCCTTTTCGTATTTGGCTCTCTTGGGC-CACGACCTGATCCTTTAGCTGTC 318
|||| ||||| |||||||| || ||||| | ||| | || || ||||| || || |||
Sbjct 193 TCACACAGACGCTTTTCGTCTTCAACTCTC-TCGGCTCTCGTCCCGATCCCTTGGCGGTC 251
Query 319 TCTTCTGCTCGGTCTAAGATCCGAGAGATCAAAGAGAAT-GATTCTTTATCGCCGGAAGA 377
|| ||||||||||| ||||| | | || ||| || ||||| | |||||||||||
Sbjct 252 TCCTCTGCTCGGTCCAAGAT-C----GCTC--AGATTATGGATTCGCTCTCGCCGGAAGA 304
Query 378 TGCGGCTAAGGAAG-AGCAGGTTTACGCTGCG-GTTGTGAGTTTAGAGGAAGTTCATGA- 434
||||| |||| || | || ||||| | | | |||||| | || || || || || ||
Sbjct 305 AGCGGCAAAGG-AGTCGGAGATTTACACCG-GAGTTGTGCGGTTGGATGAGGTACACGAT 362
Query 435 AGGATATGAGAAGCAGTT-AAGAGATTTGGAGGAGGAGATTGGTAGGGTTTATGCTTCGG 493
| | || |||||| |||| ||| ||| | ||||||||| || ||||||||||||| |||
Sbjct 363 A-GTTACGAGAAGAAGTTGAAG-GATATAGAGGAGGAGCTTTCTAGGGTTTATGCTACGG 420
Query 494 CGGTTGAATC---ATTGAGCGGTGGTGATGAAGTGAATGAGGAGGTT-TTAGCGGTGATT 549
||| ||||| ||||| | || || |||||||||||||||||| || || ||| |
Sbjct 421 AGGTAGAATCGTTGTTGAGAAGCGGCGAAGAAGTGAATGAGGAGGTTGTT-GCTGTGCTC 479
Query 550 AAAGACGCTGAAGATGGTGGAGTCGTTGAAAGGATTGATCTTTCTGATCATGAGCTTAAG 609
|| | || ||| || | | || ||| ||||| ||||| |||| || || ||||||
Sbjct 480 AAGGTGGCGGAATCCGGCGAAATCAATGAGAGGATCGATCTCTCTGGCCAAGAACTTAAG 539
Query 610 CTTCTTCCTGATGC-TTTAGGGAAAATCGTCGGTTTGGTTTCAC-TGAATGTCTCTCGTA 667
||||| ||||| || ||| ||||| | || || || |||| || ||||| ||||| | |
Sbjct 540 CTTCTCCCTGAAGCGTTT-TGGAAAGTAGTTGGCTTAGTTT-ACTTGAATCTCTCTGGCA 597
Query 668 A-CAATCTCA-GGTTTCTACCTGATACAATCTCAG-GACTTGAGAAACTGGAGGAGCTAG 724
| | | | | || || |||||||| ||||||| | ||| |||| || || ||||| |
Sbjct 598 ATGACT-TGACGG-TTATACCTGATGCAATCTC-GAAACTCAAGAAGCTAGAAGAGCTCG 654
Query 725 ATTTATCTTCAAACCGTCTCGTG--TTTCTTCCCGACTCTATTGGACTGTTACTTAA-TT 781
|| |||||||||| |||| || | |||||| |||||||| ||| |||| ||||| |
Sbjct 655 ATGTATCTTCAAA--TTCTCTTGAATCTCTTCCTGACTCTATAGGAATGTTGCTTAACCT 712
Query 782 TGAGGAT-CTTAAATGTGACGGGGAACAAGCTAACTTTACTCCCAGAAAGCATTGCGCAA 840
| ||||| ||| ||||||| |||||||| ||||| |||||| || ||||| |||||
Sbjct 713 T-AGGATCCTT-AATGTGAATGGGAACAATCTAACCGCACTCCCTGAGAGCATCGCGCAT 770
Query 841 TGCAGGTCACTGGTAGAGTTAGATGCCAGCTTCAACAACTTGACTTCTTTGCCTGCAAAC 900
|||||||||||||| ||||||||||| |||| ||||||||||||| | |||||| ||||
Sbjct 771 TGCAGGTCACTGGTTGAGTTAGATGCAAGCTACAACAACTTGACTACATTGCCTACAAA- 829
Query 901 T-TCGGATACGGATTACTCAATCTCGAAAGGCTATCGATCCAGCTGAACAAAATCCGTTT 959
| | ||||||||||||| || || || || |||||||||||||||||||| ||||||
Sbjct 830 TATTGGATACGGATTACAGAACCTGGAGAGATTATCGATCCAGCTGAACAAACTCCGTTA 889
Query 960 CTTCCCCA-ATTCCATATGTGAGATGCGTTCTCT-AAGGTATCTCGACGCACACATGAAC 1017
||| ||| ||| ||| | || ||| | ||| || |||||| |||||||||||||||
Sbjct 890 CTT-TCCAGGTTCGATAAGCGAAATGTATAATCTGAA-GTATCTTGACGCACACATGAAC 947
Query 1018 GAAATCCACGGCCTTCC-AATCGCTATAGGGAGACTCAC-AAACCTTGAAG-TCATGAAC 1074
|| |||||||| | || ||| |||| ||||| || || ||| || || | || | |||
Sbjct 948 GAGATCCACGGGATACCGAAT-TCTATCGGGAGGCTAACGAAA-CTCGAGGTTC-TAAAC 1004
Query 1075 TTGAGCAGCAACTTCAGCGACTTGATTGAACTTCCTGACACAATCTCTGATTTAGCTAAC 1134
| |||||||| |||| | ||||||| | |||||||||||||| ||||| || |||||
Sbjct 1005 CTAAGCAGCAATTTCAACAACTTGATGGGTGTTCCTGACACAATCACTGATCTAACTAAC 1064
Query 1135 TTGAGGGAGCTAGATCTCAGCAACAACCAGAT-CAGAGTC-TTGCCTGACTCGTTTTTCA 1192
|||||||||| ||||| ||||||||||| || || || | | || ||||| |||| ||
Sbjct 1065 CTGAGGGAGCTTGATCTAAGCAACAACCAAATCCA-AG-CGATACCAGACTCATTTTACA 1122
Query 1193 GGCTGGA-GAAGCTGGAGAAACTGAACTTGGACCAGAACCCT-TTGGAGTATCCCC-CAC 1249
|||| || ||||||||||||||||||||||||||||||||| ||| || ||||| | |
Sbjct 1123 GGCT-GAGGAAGCTGGAGAAACTGAACTTGGACCAGAACCCGCTTG-AG-ATCCCGTCTC 1179
Query 1250 AAGA-GATGGTTAACCAAAGCGCTGAAGCAGTTCGAGAGTTCATGAGGAAGAGGTGG-GA 1307
|||| | ||| || ||| | |||||||| ||| ||||||| |||| |||||| ||| |
Sbjct 1180 AAGAAG-TGGCTAGTCAAGGAGCTGAAGCGGTTAGAGAGTTTATGAAGAAGAGATGGAGT 1238
Query 1308 AGAGATGGTGG-AGGAAG-AGCAATTGAGGAGTGT-GATTGAAGCTGAGAAGCAACAAGG 1364
||||| ||| || | | ||||| ||||| || | |||| ||||||| | | || ||
Sbjct 1239 -GAGATTATGGCAG-A-GCAGCAACAGAGGATTGGCG-TTGAGGCTGAGA-G-A-CATGG 1291
Query 1365 AGGA-GCAACAGGTTGGCTCTCATGGGGGAGC-TCCATTGTTACTA 1408
| | | ||| || ||| ||| || ||||| | ||||| |||||||
Sbjct 1292 AA-ATGAAACCGGGTGGGTCT-ATTGGGGAACCTCCATGGTTACTA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5