BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12980.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920163 jgi|Araly1|920163|scaffold_101444.1 1234 0.0
> Ahg920163 jgi|Araly1|920163|scaffold_101444.1
Length=1020
Score = 1234 bits (668), Expect = 0.0
Identities = 919/1037 (89%), Gaps = 30/1037 (3%)
Strand=Plus/Plus
Query 56 AAACCCTAGAAACC-AAAAATGGAAAAAGCCTTGAGAAACTTCACCGAATCTACCCACTC 114
|||||||||||||| |||||||||| ||||| | || |||||||||||||||| ||||||
Sbjct 3 AAACCCTAGAAACCAAAAAATGGAAGAAGCCCTAAGGAACTTCACCGAATCTAGCCACTC 62
Query 115 ACCAGACCCTAATCCTCTCAC-AAAATTCTTCACTGAACCTACAGCCTCACCTGTTAGCC 173
||| ||||| |||||| |||| |||| ||||||||| ||||||| ||||| |||||||
Sbjct 63 ACCCGACCCAAATCCTTTCACGAAAA-ACTTCACTGATGCTACAGCTTCACCAGTTAGCC 121
Query 174 GCAACCGCAAACTGTCTTCAAAAGATACCACTGTAACCATCGCCGGAGCTGGCAGCAGCA 233
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 122 GCAACCGCAAACCGTCTTCAAAAGATACCACAGTAACCATCGCCGGAGTTGGCAGCAGCA 181
Query 234 CGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATACGCGGCGGAGATACGTG 293
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 182 CGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATATGCGGCTGAGATACGTG 241
Query 294 ACCCAATGTCGAAGGAGAGAC-GTTGGCTCGGAACATTTGACACGGCGGAACAAGCCGCT 352
|||||||||| ||||| |||| || ||||||||||||| ||||||||||| |||||||||
Sbjct 242 ACCCAATGTCAAAGGAAAGACAGT-GGCTCGGAACATTCGACACGGCGGAGCAAGCCGCT 300
Query 353 TGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCAAAGGCTCGTACTAATTTTACT 412
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 301 TGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCTAAGGCTCGTACCAATTTTGCT 360
Query 413 TATCCGACAGCTGTCATTATGCCTGAACCAAGGTTTTCTTTTTCCAACAAGAAATCT-TC 471
|||||||||||||| ||||||||||| ||||||||||| ||||| | |||||||||| |
Sbjct 361 TATCCGACAGCTGTTATTATGCCTGAGCCAAGGTTTTCCTTTTCTACCAAGAAATCTCT- 419
Query 472 GCCGTCTGCTCGTTGTCCTCTTCCTTCTCTACCGTTAGAT-TCCTCTACCCAAAACTTTT 530
| |||| | |||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 420 GTCGTCCCCCCGTTGTCCTCTTCCTTCTCTACCGTTAGATCTC-TCTACCCAGGACTTTT 478
Query 531 ACGGTGCACCGGCAGCGCAGAGGATCTATAATACACAGTCTATCTTCTTACGCGACGCCT 590
|||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct 479 TCGGTGCACCGGCAGCGCAGAGGAT-TA-A-TACACAGTCTATCTTCTTACGTGACGCCT 535
Query 591 CGTGTTCCTCTCGTAAAACGACTCCGTATAATAACTCTTTCAACGGCTCATCATCTTCTT 650
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 536 CGTGTTCCTCTCGTAAAACGACTCCGTATAA---CTCTTTCAACGTTTCATCTTCTTCTT 592
Query 651 ACTCAGCATCGAAAACGGCATGCGTTTCTTATTCCGAAAACGAAAACAACGAGTCGTTTT 710
|||||||| |||| ||||||||| |||| | |||||| ||||||||||||||||||||||
Sbjct 593 ACTCAGCACCGAAGACGGCATGCTTTTCATCTTCCGACAACGAAAACAACGAGTCGTTTT 652
Query 711 TCCCGGAAGAATCTTCTGATACTGGTCTATTACAAGAGGTCGTTCAAGAGTTCTTGAAGA 770
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 653 TCCCTGAAGAATCTTCTGATTCTGGTCTTTTACAAGAGGTCGTTCAAGAGTTCTTGAAGA 712
Query 771 AAAATCGCGGCGTTCCTCCTTCTCCACCAACACCACCGCCGGTGACTAGCCAT-CATGAC 829
| ||||||||| |||||| | | ||||||||||||||||||||| |||||| | | |
Sbjct 713 AGAATCGCGGCACTCCTCCG-C-C-ACCAACACCACCGCCGGTGACCAGCCATAC-TCAT 768
Query 830 AACTCTGGTTATTTCTCTAATCTCACTATATACTCTGAAAATATGGTTCAAGAGACTAAG 889
||||||||| |||||||| ||||||| | |||||||| |||||| ||||||| || |||
Sbjct 769 AACTCTGGTGATTTCTCTGCTCTCACTCTCTACTCTGACAATATGTTTCAAGACACGAAG 828
Query 890 GAGACTTTGTCGTCGAAACTAGATCGCTACGGGAATTTTCAAGCTAATGACGACGGCGTA 949
||| | | ||||||||||||||||||| ||||||||| |||||||||||| ||| ||
Sbjct 829 GAGTCCCTATCGTCGAAACTAGATCGCTTCGGGAATTTCCAAGCTAATGACTCCGGT-TA 887
Query 950 A---GA-GCCGTC-GCAGACGGTGGTTTATCGTTGGGATCAAACGAGTGGGGGTATCAAG 1004
|| | ||| || | || | | || ||| ||||||||||||||||||||||
Sbjct 888 TTTCGACGGCGTAAGC-GCCGCCGCAG-A-CGGTGGT-TCAAACGAGTGGGGGTATCAAG 943
Query 1005 AAATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGAAGATCGTGGGGATAGCTAG 1064
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 944 AAATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGGAGATCGTGGGGATAGCTAG 1003
Query 1065 ATATTCATCATGATTAT 1081
|| ||||||||||||||
Sbjct 1004 ATCTTCATCATGATTAT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5