BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12990.1
Length=2035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920164 jgi|Araly1|920164|scaffold_101445.1 2028 0.0
> Ahg920164 jgi|Araly1|920164|scaffold_101445.1
Length=1221
Score = 2028 bits (1098), Expect = 0.0
Identities = 1180/1220 (97%), Gaps = 4/1220 (0%)
Strand=Plus/Plus
Query 316 GGTGGATCTGAGT-TTGGGATGTGGTGGATGATGGGAGAAGCTGGTGGGCATTACTGTTC 374
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4 GGTGGATCTGA-TACTGGGATGTGGTGGATGATGGGAGAAGCTGGTGGACATTACTGTTC 62
Query 375 TAAGAAGACTGATGATATCTGCGGCGGTGTTTGTAGTCAGGAACCTGGAAGATTCTTCAG 434
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 63 TAAGAAGACTGATGATATCTGCGGTGGTGTTTGTAGTCAGGAACCTGGAAGATTCTTCAG 122
Query 435 CTTTTCTAGACTTTGTTGTGCTCTTCGTGGTGTTGATATGAAGACTTATATCTTCTTATT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CTTTTCTAGACTTTGTTGTGCTCTTCGTGGTGTTGATATGAAGACTTATATCTTCTTATT 182
Query 495 AGTGATTGTTCCCACATGTGTACTCGCTGGCTATGTCCACGGTCAGAAGATTTCTTACTT 554
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 183 AGTGATTGTTCCCACATGTGTACTCGCTGGTTATGTCCACGGTCAGAAGATTTCTTACTT 242
Query 555 TCTCCGGCCTTTATGGGAATCACCACCTAAACCTTTTCATGACATTCCTCATTACTACCA 614
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCTCCGGCCATTATGGGAATCACCACCTAAACCTTTTCATGACATTCCTCATTACTACCA 302
Query 615 CGAGAACGCTTCTATGGAGACTCTTTGTAAACTCCATGGCTGGGGTGTTCGAGACTACCC 674
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 303 TGAGAATGCTTCTATGGAGACTCTTTGTAAACTCCATGGCTGGGGTGTACGAGAATACCC 362
Query 675 TAGACGAGTTTATGATGCGGTTTTGTTCAGTAACGAGCTTGATATCCTCGCTGTTCGTTG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 TAGACGAGTTTATGATGCGGTTTTGTTCAGTAACGAGCTTGATATCCTCGCTGTTCGGTG 422
Query 735 GAGAGAATTGTTTCCTTACATCACTCAGTTTGTCCTCCTTGAATCAAACACGACGTTCAC 794
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 423 GAGAGAATTGTTTCCTTACATCACTCAGTTTGTCCTTCTAGAATCAAACACGACGTTCAC 482
Query 795 TGGCTTGCCTAAGCCTCTTGTCTTTGCTGCTCACCGAGATGAGTTCAAGTTTATTGAGTC 854
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 483 TGGGTTGCCTAAGCCTCTTGTGTTTGCTGCTCACCGAGATGAGTTCAAGTTTATCGAGTC 542
Query 855 ACGCTTGACTTATGGTACTGTTGGTGGAAGATTTGTCAAAGGGCAGAATCCGTTTTACGA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ACGCTTGACTTATGGTACTGTTGGTGGAAGATTTGTCAAAGGGCAGAATCCGTTTTACGA 602
Query 915 AGAGGCGTATCAGCGGGTAGCTCTTGATCAGCTTCTGAGAATCGCTGGGATTACTGATGA 974
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 AGAGGCTTATCAGCGAGTAGCTCTAGATCAGCTTCTGAGAATCGCTGGGATTACTGATGA 662
Query 975 TGACTTGTTGTTAATGTCTGATGTCGATGAGATTCCAAGTAGACACACCATTAACCTTTT 1034
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 663 TGACTTGTTGTTAATGTCTGATGTTGATGAGATTCCAAGTAGACACACCATTAACCTTTT 722
Query 1035 GAGATGGTGCGATGAGATCCCGAAGATACTTCATCTGCGCCTCAAGAACTATCTTTACTC 1094
|| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 723 AAGGTGGTGCGATGATATCCCGAAGATCCTTCATCTGCGGCTCAAGAACTATCTTTACTC 782
Query 1095 GTTTGAATTCCTTGTTGATAACAAAAGCTGGAGAGCTTCCATCCACAGATATGAGACGGG 1154
||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 783 GTTCGAATTCCTTGTTGATAACAAGAGCTGGAGAGCTTCCGTCCACAGATATGAGACGGG 842
Query 1155 TAAGACACGGTATGCTCATTATCGACAGTCTGATGAAATCTTGGCGGATGCAGGATGGCA 1214
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 843 TAAGACACGGTATGCTCATTATCGACAGTCGGATGAAATCTTGGCGGATGCAGGATGGCA 902
Query 1215 TTGTAGCTTTTGCTTCCGACGAATCAGTGAGTTTATATTCAAGATGAAAGCTTATAGCCA 1274
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 903 CTGTAGCTTTTGCTTCCGACGGATCAGTGAGTTTATATTCAAGATGAAAGCTTATAGCCA 962
Query 1275 TAATGACAGAGTGAGGTTTGGTCATTTCTTGAATCCTAAGAGAGTTCAAAGAGTTATATG 1334
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAATGATAGAGTGAGGTTTGGTCATTTCTTGAATCCTAAGAGAGTTCAAAGAGTTATATG 1022
Query 1335 CAAAGGAGCTGATCTTTTCGATATGCT-CCCTGAAGAGTATACCTTCAAGGAGATAATAG 1393
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1023 CAAAGGAGCTGATCTTTTCGATATGCTTCCC-GAAGAGTATACCTTCAAGGAGATAATAG 1081
Query 1394 GAAAAATGGGTCCAATCCCGCATTCTTTCTCAGCTGTTCATCTTCCTTCGTATCTCCTGG 1453
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1082 GAAAAATGGGTCCAATCCCGCATTCTTTCTCAGCCGTTCATCTTCCTTCGTATCTCCTGG 1141
Query 1454 AAAACGCGGATAAGTACAGATTTCTCTTGCCGGGAAATTGCATAAGAGAAAGCGAATGAT 1513
|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 1142 AAAACGCGGATAAGTACAGATTCCTCTTACCGGGAAATTGCATAAGAGAAACCGAATGAT 1201
Query 1514 CGTTCGAATCTTCACCACAT 1533
|| |||||||||||||||||
Sbjct 1202 CGATCGAATCTTCACCACAT 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76523302205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5