BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13000.1
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920165 jgi|Araly1|920165|scaffold_101446.1 2036 0.0
Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 728 0.0
Ahg926055 jgi|Araly1|926055|scaffold_201616.1 459 5e-128
Ahg936504 jgi|Araly1|936504|scaffold_500695.1 244 1e-63
> Ahg920165 jgi|Araly1|920165|scaffold_101446.1
Length=1246
Score = 2036 bits (1102), Expect = 0.0
Identities = 1197/1244 (96%), Gaps = 1/1244 (0%)
Strand=Plus/Plus
Query 380 ACTT-AACCGGATTCAGGACATGGCTAACCGAACAGACAACTCGAATCGCTGTTCGAATG 438
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTAAACCGGATTCAGGACATGGCTAACCGAACAGACAACTCGAATCGCTGTTCGAATG 60
Query 439 GTAAAAAGCCAAATGATGGAATGAGACTCATTATAGCGACATTCGTAGGAATAGTTGTCG 498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTAAAAAGCCAAATGATGGAATGAGACTCATTATAGCGACATTCGTAGGAATAGTTATCG 120
Query 499 GTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAACTAAATTTTCCCTCTG 558
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 121 GTTTCTTCTTGGGGATATCTTTCCCTACATTATCACTAACAAAACTAAATTTCCCCTCTG 180
Query 559 GCATTCTTCCCTCTGTTGATATTACTTACGTAGAAGATGAGACACCAGAAACATCGAGTG 618
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 181 GCATTCTTCCCTCTGTTGATATTGCTTACGTGGAAGATGAGACACCAGAAACATCGAGTG 240
Query 619 AAACGCTTTTGCATACATGGTCATCTAGGGGTCCGTTACATGGGGCTAATTCAAGTGATG 678
|||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 241 AAACGCTTTTACATACATGGTCATCTAGGAGTCCGTTACATAGGGCTAATTCGAGTGATG 300
Query 679 CACCGCATTGGAAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAGATGCTGACTCCTG 738
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CACCGCAATGGAAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAAATGCTGACTCCTG 360
Query 739 GTATCATTGCACCTGAATCAGATTACTACTTACGCAGACTTTGGGGATTACCTGAGGAGG 798
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 361 GTATCATTGCATCTGAATCAGATTACTACATACGCAGACTTTGGGGATTACCTGAAGAGG 420
Query 799 ATGTTCCTGTGAAGCCAAAGTATCTCATTGCGTTTACTGTCGGTTTTGGTCAGAAAGTGA 858
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 421 ATGTTCCTGTGAAGCCAAAGTATCTCATTGCTTTTACTGTCGGTTTTGGTCAGAAAGTAA 480
Query 859 ACGTTGATGCTTGTGTCAAGAAGTTTTCAAAAGATTTTACAATTGTTCTATTCCACTACG 918
||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||
Sbjct 481 ACGTTGATGCTTGTGTCAAGAAGTTTTCAGAAGATTTCACAATTGTCCTGTTCCACTACG 540
Query 919 ACGGACGAACCACAGAATGGGAAGAATTAGAATGGTCCAAACGCGCAATACACGTGAGCG 978
| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 541 ATGGACGAACCACAGAATGGGGCGAATTCGAATGGTCCAAACGCGCAATACACGTGAGCG 600
Query 979 TGCCAAAGCAAACCAAATGGTGGTATGCTAAAAGGTTTCTGCATCCTGACATTGTGGCAC 1038
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 601 TGCCAAAGCAAACCAAATGGTGGTATGCTAAACGGTTTCTGCATCCTGACATCGTGGCAC 660
Query 1039 CTTATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAG 720
Query 1099 AGTACATCAGGCTTATAAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTTGAGTCTA 1158
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 AGTACATCAGGCTGATTAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTGGAGTCTA 780
Query 1159 AGAAAAAGATCACATGGGAGATAACAAAGAGAAAAACCAAAGGAGAAGTTCACAAAGATG 1218
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAAAAAGATCACGTGGGAGATAACAAAGAGAAAAACCAAAGGAGAAGTTCACAAAGATG 840
Query 1219 CGAAGGAGAAACCAGGTCGATGCAATGACCCTCACTTGCCTCCCTGTGCAGCGTTTATAG 1278
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 841 CCAAGGAGAAACCAGGTCGATGCAACGACCCTCACTTGCCTCCATGTGCGGCGTTTATAG 900
Query 1279 AGATTATGGCTCCAGTATTCTCAAGAGATGCATGGCGTTGCGTGTGGCATATGATTCAGA 1338
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 901 AGATTATGGCTCCAGTATTCTCAAGAGATGCGTGGCGTTGTGTGTGGCATATGATTCAGA 960
Query 1339 ACGATTTGGTTCACGGTTGGGGTCTTGATTTCGCACTCCGTAAATGCGTTGAGCCTGCAC 1398
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 961 ACGACTTGGTTCACGGTTGGGGTCTTGATTTTGCACTCCGTAAATGCGTCGAGCCTGCAC 1020
Query 1399 ATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAG 1458
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 ATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATTCATCAATCTCTTCCTTCTTTAG 1080
Query 1459 GCAGCCAGGGAGAGGCACAAGACGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAGATGTA 1518
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCAGCCAGGGAGAGGCACAAGATGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAGATGTA 1140
Query 1519 AACGGGAATGGACAATGTTCCAAAGCCGAATGGCTAGTTCCGAGAAGCAGTATCTCAAGG 1578
|||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 1141 AACGAGAATGGACAATGTTTCAAAGCCGATTGGCGAGTTCCGAGAAGCAGTATCTCAAGG 1200
Query 1579 AAATCGCAAACTCAACGATTCATTAGCTGAAGAAACTAAACAAA 1622
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAATCGCAAACTCAACGATTCATTAGCTGAAGAAACTAAACAAA 1244
> Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323
Length=1215
Score = 728 bits (394), Expect = 0.0
Identities = 956/1220 (78%), Gaps = 67/1220 (5%)
Strand=Plus/Plus
Query 399 ATGGCTAACCGAACAGACAACTCGAAT-CGCTGTTCGAATGGTAAAAAGCCAAATGATGG 457
||||| ||| || |||||||||| ||| || ||||| ||| ||||||| || ||||| ||
Sbjct 1 ATGGCAAACAGAGCAGACAACTC-AATACGTTGTTCAAATAGTAAAAAACCGAATGACGG 59
Query 458 AATGA-GACTCATTATAGCGACATTCGTAGGAATAGTTGTCGG-TTTCTTCTTGGGGATA 515
|||| | ||| | ||| | | || | ||||||||| |||| ||| || || || |||
Sbjct 60 TATGATG-CTCGTAATATCAATTTTTGCGGGAATAGTTATCGGATTT-TTGTTAGGAATA 117
Query 516 TCTTTCCCTACACTATCACTAAC-AAAACTAAATTTTCCCTCTGGCATTCTTCCCTCTGT 574
||||| |||||| | |||||||| || | | |||||||| || |||| ||||| |||||
Sbjct 118 TCTTTTCCTACATTGTCACTAACTAAGA-TGAATTTTCCATCAAGCATACTTCCTTCTGT 176
Query 575 TGATATTACTTACGTAGAAGATGAGACACCAGA-AACATCGAGT-GAA-ACGCTTTTGCA 631
|| || | |||| ||||| | |||| ||| || || ||| | | || ||| || ||
Sbjct 177 TGCTACTGTTTACATAGAAAACGAGAAACCGGAGAA-ATC-A-TCTAAGACGAGTTCACA 233
Query 632 TACATG-GTCATCTAGGGGT-CCGTTACATGGGGC-TAATTCAAG----TGATGCACCGC 684
| ||| || | ||| | | | | |||| | ||| || | || | | || |
Sbjct 234 -AAATGAGT--T-TAGTGATGCAG-CACAT-CATCATAAGGCATGTTTTTGTTTCTCC-C 286
Query 685 ATTGGAAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAGATGCTGACTCCTGGTATCA 744
|| |||||||||||||||||||| || |||||||||||| || |||| || |
Sbjct 287 -TT-----ATTTGGGTTCCATCGAATCCTCGCGGTGCAGAGATGTTGCCTCCAAGTTTTG 340
Query 745 TTGC-ACCTGAATCAGATTACTACTTACGCAGACTT-TGGGGATTACCTGAGGAGGATGT 802
|||| ||| |||||||||| |||||||| ||| || |||||||| ||| | || ||| |
Sbjct 341 TTGCAACC-GAATCAGATTTTTACTTACGAAGA-TTGTGGGGATTGCCTAAAGATGAT-T 397
Query 803 T-CC--T-GTGAAGCCAAAGTATCTCA-TTGCGTTTACTGTCGGTTTTGGTCA--GAAAG 855
| || | ||||| || |||||||| | |||| |||||||| || || || ||||
Sbjct 398 TACCAGTGGTGAAACCTAAGTATCT-AGTTGCTTTTACTGTTTCTTATGAACAGCGAAA- 455
Query 856 TGAACGTTGATGCTTGTGTCAAGAAGTTTTCA-AAAGATTTTACAATTGTTCTATTCCAC 914
||| |||||||||| ||||||| || ||| | | | || || || ||||| || ||
Sbjct 456 -AAACATTGATGCTTGCATCAAGAAATTCTCAGATA-ACTTCACTATCGTTCTGTTTCAT 513
Query 915 TACGACGGACGAACCACAGAATGGGAAGAATTAGAATGGTCCAAACGCGCAATACACGTG 974
||||| ||| |||| | |||| || ||||| |||||||| ||||| || |||||||||
Sbjct 514 TACGATGGAAAAACCTCGGAATATGATGAATTTGAATGGTCTAAACGGGCGATACACGTG 573
Query 975 AGCGTGCCAAAGCAAACCAAATGGTGGTATGCTAAAAGGTTTCTGCATCCTGACATTGTG 1034
|| || || ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 574 AGTGTACCTAAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATA 633
Query 1035 GCACCTTATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTA 1094
||||| ||||| ||| ||||||| ||||||||||| || || ||||||||||||| | |
Sbjct 634 GCACCGTATGAATATATATTCATTTGGGATGAAGATCTTGGTGTTGAAAACTTCGACGCA 693
Query 1095 GAAGAGTACATC-AGGCTTATAAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTTGA 1153
|||||||||||| || || | ||||| || |||||||| |||||||| || ||||| ||
Sbjct 694 GAAGAGTACATCGAGA-TTGTGAAGAAGCATGGTCTAGAAATATCGCAACCCGCTGTGGA 752
Query 1154 GTCTAAGAAAAAGA-TCACATGGGAGATAACAAAGAGAAAAACCA-AAGGAGAAGTTCAC 1211
|| ||||||| | |||||||| ||||||||||||||| | ||| ||| |||||||||
Sbjct 753 ATC-AAGAAAATCAATCACATGGAAGATAACAAAGAGAATACCCAGAAGC-GAAGTTCAC 810
Query 1212 AAAGATG-CGAAGGAGAAACCAGGTCGATGCAATGACCCTCACTTGCCTCCCTGTGCAGC 1270
||||| | ||||| |||||||||| || || |||||||||||| | ||||| |||||||
Sbjct 811 AAAGAAGTCGAAG-AGAAACCAGGCCGCTGTAATGACCCTCACCTACCTCCTTGTGCAGG 869
Query 1271 GTTTATAGAGATTATGGCTCCAGTATTCTCAAGAGATGCATGGCGTTGCGTGTGGCATAT 1330
|||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 870 GTTTATAGAGATTATGGCTCCAGTTTTCTCAAGAGATTCATGGCGCTGCGTGTGGCATAT 929
Query 1331 GATTCAGAACGATTTGGTTCACGGTTGGGGTCTTGA-TTTCGCACTCCGTAAATGCGTTG 1389
||| ||||| || ||||||||||||||||||||||| ||| || || | ||||| ||||
Sbjct 930 GATACAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTT-GCGCTAAGAAAATGTGTTG 988
Query 1390 AGCCTGCACATGAGAAGATAGG-AGTTGTGGATTCTCAATGGATCATACATCAATCTCTT 1448
||||||||||||||||||| || | |||||||||||||||||||||| |||||| ||
Sbjct 989 AGCCTGCACATGAGAAGATTGGTA-TTGTGGATTCTCAATGGATCATTCATCAAAAGATT 1047
Query 1449 CCTTCTTTAGGCAGCCAGGGAGAG-GCACAAGACGGTAAAGCAGGGTGGCAAGGGGTGAG 1507
||||||||||| ||||||||| | || || || || ||| | | || |||||||| ||
Sbjct 1048 CCTTCTTTAGGAAGCCAGGGA-ACTGCGCAGGAAGGGAAATCCGCGTTCCAAGGGGTAAG 1106
Query 1508 AGACAGATGTAAACGGGAATGGACAATGTTCCA-AAGCCGAATGGCTAGTTCCGAGAAGC 1566
||| |||||||||||||||||||||||||| || || ||||| | | || ||| ||
Sbjct 1107 AGAGAGATGTAAACGGGAATGGACAATGTTTCAGAAAA-GAATGACGCGATCAGAGCAGA 1165
Query 1567 AGTATCTCAAGGAAATCGCA 1586
||||||| || ||||| |||
Sbjct 1166 AGTATCTGAAAGAAATTGCA 1185
> Ahg926055 jgi|Araly1|926055|scaffold_201616.1
Length=1259
Score = 459 bits (248), Expect = 5e-128
Identities = 700/913 (77%), Gaps = 52/913 (6%)
Strand=Plus/Plus
Query 690 AAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAGATGCTGACTCCTGGTATCATTGCA 749
||||| |||||||| || ||||| || ||||| || ||| || | || ||||| ||||
Sbjct 304 AAGATCTGGGTTCCTTCAAATCCTCGTGGTGCTGAAATGTTGCCACCGGGTATGGTTGCT 363
Query 750 CCTGAATCAGA-TTACTACTTACGCAGACTT-TGGGGATTACCTG-AGGAGGATGTT--C 804
|||||||||| || ||| || |||||| || ||||| ||||| | |||||||| || |
Sbjct 364 GCTGAATCAGACTT-CTATTTGCGCAGA-TTATGGGGGTTACC-GCAGGAGGAT-TTGAC 419
Query 805 CTGTGAAGCCAAAG-TATCTCATTGCGTTTACTGTCGGTTTTGGTCAGAAAGTGAACGTT 863
| ||||| || ||| || ||| ||||||| || ||| || |||||||| || ||
Sbjct 420 CAGTGAA-CC-AAGATACCTCGCAACGTTTACAGTGGGTATTAATCAGAAAGCAAATATT 477
Query 864 GATGCTTGTGTCAAGAAGTTTTCA-AAAGATTTTACAATTGTTCTATTCCACTACGACGG 922
|||||||||||||||||||||||| ||| | || || ||||| || || ||||| |||||
Sbjct 478 GATGCTTGTGTCAAGAAGTTTTCAGAAA-ACTTCACTATTGTCCTGTTTCACTATGACGG 536
Query 923 ACGAA-CCACAGAATGGGAAGAATTAGAATGGTCCAA-ACGCGCAATACACGTGAGCGTG 980
| || || || ||||| || || |||||||| || || || |||||| | ||||||
Sbjct 537 TC-AAGTAACCGAGTGGGATGAGTTTGAATGGTCGAAGAC-TGCTATACACATTAGCGTG 594
Query 981 CCAAAGCAAACCAAATGGTGGTATGCTAAA-AGGTTTCTGCATCCTGACATTGTGGCACC 1039
| |||||| || |||||||||||||| ||| |||||| |||| ||||| ||||| ||||
Sbjct 595 CGAAAGCAGACAAAATGGTGGTATGC-AAAGAGGTTTTTGCACCCTGATATTGTAGCACG 653
Query 1040 TTATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAGA 1099
||||| ||| | |||||||||||||||||||| || | || | || ||| ||||||
Sbjct 654 ATATGATTATATCTTCATCTGGGATGAAGACCTTGGGGTCGAGCATTTTAATGCAGAAGA 713
Query 1100 GTACATCAGGCTTATAAAGAAACACGGTCTAGAGATATCGCAGCCT-GCTGTTGAGTCTA 1158
|||||| | | | | ||||| || || || ||||| || || ||| ||| | || | |
Sbjct 714 GTACATAAAGATGGTGAAGAAGCATGGCCTGGAGATTTCCCAACCTGGCT-TGGA-ACCA 771
Query 1159 AGA-AAAAGA-TCACATGGGAGATAACAAAGAGAAAAACCA-A-AGGAGAAGTTCACAAA 1214
| | | || | || ||| |||| |||||||| | | | | | | ||||| ||| ||
Sbjct 772 A-ACCAGGGATTAACGTGGCAGATGACAAAGAG-ACGAGGAGATATG-GAAGTCCAC-AA 827
Query 1215 GAT-GC-GAAGGAGAA-ACCAGG-TCGATGC-AATGACCCTCACT-TGCCTCCCTGTGCA 1268
||| | ||| || || ||| || | | ||| | || ||||| | | ||||| |||||
Sbjct 828 GATAACAGAA-GA-AAGACCTGGAT-GGTGCTCA-GATCCTCA-TCTCCCTCCATGTGCT 882
Query 1269 GCGTTTATAGAGATTATGGCTCCAGTATTCTCAAGAGATGCATGGCGTTGCGTGTGGCAT 1328
|| || | ||||| |||||||| ||||| |||||| | || ||||| |||||||||||
Sbjct 883 GCATTCGTTGAGATCATGGCTCCTGTATTTTCAAGAAACGCTTGGCGATGCGTGTGGCAC 942
Query 1329 ATGATTCAGAACGATTTGGTTCACGGTTGGGGTCTTGA-TTTCGCACTCCGTAA-ATGCG 1386
|||| ||||| |||||||||||||||||||| ||||| ||| |||||| | || ||| |
Sbjct 943 GTGATCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTT-GCACTCAG-AAGATGTG 1000
Query 1387 TTGAGCCTGCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTC 1446
|||||||||||||||||||||||||||| || |||||||| ||| || | |||||||||
Sbjct 1001 TTGAGCCTGCACATGAGAAGATAGGAGTAGTAGATTCTCAGTGGGTCGTTCATCAATCTT 1060
Query 1447 TTCCTTCT-TTAGGCAGCCAGGGAGAGGCACAAG-ACGGTAAAGCAGGG-TGGCAAGGGG 1503
||||||| || |||| ||| || |||||| | | |||| ||||| | ||||||||||
Sbjct 1061 TTCCTTCCCTT-GGCAACCAAGGTGAGGCA-ACGGACGGGAAAGC-GCCATGGCAAGGGG 1117
Query 1504 TGAGAGACAGATGTAAACGGGAATGGACAATGTTCCAAAGCCGAATGGCTAGTTCCGAGA 1563
| || || ||||| ||| |||||||||||||||||| || ||||||||| | ||||
Sbjct 1118 TAAGGGATAGATGCAAAAAGGAATGGACAATGTTCCAGAGTAGAATGGCTAACGCGGAGA 1177
Query 1564 AGCAGTATCTCAA 1576
|| | ||| ||||
Sbjct 1178 AGGATTATTTCAA 1190
> Ahg936504 jgi|Araly1|936504|scaffold_500695.1
Length=1222
Score = 244 bits (132), Expect = 1e-63
Identities = 402/528 (76%), Gaps = 36/528 (7%)
Strand=Plus/Plus
Query 933 GAATGGGAAGAATTAGAATGGTCCAAACGCGCAATACACGTGAGCGTGC-CAAAGCAAAC 991
||||||||||| || ||||||||||| || || || || |||||| | | ||| |||||
Sbjct 516 GAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTCGGAAA-CAAAC 574
Query 992 CAAATGGTGGTATGCTAAAAGGTTTCTGCATCCTGACATTGTGGCACCTTATGACTATGT 1051
||||||||||| || || || ||||| ||||||||||| || || || ||||| ||| |
Sbjct 575 AAAATGGTGGTACGCCAAGAGATTTCTTCATCCTGACATAGTTGCCCCCTATGAATATAT 634
Query 1052 ATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGT-AGAAGAGTACATCAGG- 1109
|||||| ||||| || || || || | ||| |||| ||| | ||| | | ||| ||
Sbjct 635 ATTCATATGGGACGAGGATCTTGGTGTGGAACACTTTGAT-TCGGAA-A-AATATCTGGC 691
Query 1110 C-TTATAAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTT-GAGTC-TAAGAAAAAG 1166
| | | |||||||| ||| | || || || ||||||| ||| ||| | || | || |
Sbjct 692 CGTGGTGAAGAAACATGGTTTGGAAATCTCACAGCCTG-GGTTAGAGCCATATG-AAGGG 749
Query 1167 ATCACATGGGAGATAACAAAGAGAAA-A-ACCAAAGGAGAAGTTCACAAAG-ATGC-GAA 1222
|||||||||| || ||||||| ||| | || | | ||||| ||| ||| |||| | |
Sbjct 750 CTCACATGGGAAATGACAAAGA-AAAGAGACGACA-CTGAAGTCCAC-AAGCATGCTG-A 805
Query 1223 GGAGA--AACCAGGTCGATGCAATGA-CCCTCACTTGCCTCCC-TGTGCAGCGTTTATAG 1278
||||| || ||| | |||| || ||| |||| || ||| |||||||| ||| | |
Sbjct 806 GGAGAGGAA-TGGGT-GGTGCACCGATCCC-AACTTACC-CCCTTGTGCAGCATTTGTGG 861
Query 1279 AGATTATGGCTCCAGTATTCTCAAG-AGATGCATGGCGTTGCGTGTGGCATATGATTCAG 1337
||||||||||||| || ||||| | | | |||||||| || ||||||||||||||||||
Sbjct 862 AGATTATGGCTCCTGTTTTCTCCCGCA-AAGCATGGCGCTGTGTGTGGCATATGATTCAG 920
Query 1338 AACGATTTGGTTCACGGTTGGGGTCTTGA-TTTCGCAC-TCCGTAAATGCGTTGAGC-CT 1394
|||||||||||||| || |||||||| || ||| || | | || ||||| ||| || |
Sbjct 921 AACGATTTGGTTCATGGATGGGGTCTGGACTTT-GC-CGTTCGGAAATGTGTTCAGAAC- 977
Query 1395 GCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAA 1442
||||| ||||| || |||||||| ||| |||||||||| || ||||||
Sbjct 978 GCACACGAGAAAATTGGAGTTGTTGATGCTCAATGGATTATTCATCAA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71419209375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5