BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13020.1
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920166 jgi|Araly1|920166|scaffold_101447.1 2625 0.0
Ahg484402 jgi|Araly1|484402|fgenesh2_kg.5__394__AT3G26400.1 566 3e-160
> Ahg920166 jgi|Araly1|920166|scaffold_101447.1
Length=1701
Score = 2625 bits (1421), Expect = 0.0
Identities = 1617/1709 (95%), Gaps = 24/1709 (1%)
Strand=Plus/Plus
Query 143 TTTGGAATTGGAAAATTCACAGATGTCGAAACCTTGGGGTGGAATCGGCGCATGGGCTGA 202
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 TTTGGAATT-GAAAAATCACAGATGCCGAAACCTTGGGGTGGAATCGGCGCATGGGCCGA 59
Query 203 TGAGGCTGAGCGTGCCGATGAAGAGCAAGCTGCTGAAGCTACAGCCACGGCGGCAGATTC 262
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 TGAGGCTGAGCGTGCCGATGAAGAGCAAGCTGCTGAAGCTACAGCCACGGCGGCGGATTC 119
Query 263 ACAGAGTTTCCCGAGTCTGAAAGAGGCTGCGACTGCTAAGTCTTCTAAGAAGAAGAAGAA 322
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACAGAGTTTCCCGAGTTTGAAAGAGGCTGCGACTGCTAAGTCTTCTAAGAAGAAGAAGAA 179
Query 323 GATGACTTTATCGGAGTTTACCAAAGGAGCATACACTGCTCCGAGTTCTGCTGGATTGAC 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATGACTTTATCGGAGTTTACCAAAGGAGCATACACTGCTCCGAGTTCTGCTGGATTGAC 239
Query 383 GAGAGAGCAGATGCTTCAGCTACCTACTGGTCCAAGACAACGTTCTGAGGATGAAATGCA 442
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GAGGGAACAGATGCTTCAGCTTCCTACTGGTCCAAGACAACGTTCTGAGGAGGAAATGCA 299
Query 443 ACCTGGTCGTCTCGGTGGTGGATTCTCTTCTTATGGTGGAGGAAGGTCTAGTGGACCTCC 502
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACCTGGTCGTCTCGGTGGTGGGTTCTCTTCTTATGGTGGAGGAAGGTCTAGTGGACCTCC 359
Query 503 GGGAAGAATGTCACGAGATCGAGAGGATTCTGATGGGTCTTGGGGCGGTGGTGGTGGTGG 562
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGGGAGAATGTCACGAGATCGAGAGGATTCTGATGGGTCTTGGGGCGGTGGTGGTGGTGG 419
Query 563 GAGGAGATCTTATGGTGGATTTGATGATGATCAGAGGGGATCTAATTCTAGGGTTTCTGA 622
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TAGGAGATCTTATGGCGGATTTGATGATGATCAGAGAGGATCTAATTCTAGGGTTTCTGA 479
Query 623 TTTCCCACAAGTTTCTAGGGCTGATGAGGATGATGATTGGGGAAAAGGAAAGAAATCGCT 682
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TTTCCCACAAGTGTCTAGGGCTGATGAAGATGATGATTGGGGAAAAGGAAAGAAATCGCT 539
Query 683 TCCTTCGTTTGATCAAGGACGTCAAGGTAGTCGTTATGGTGG---T-G-GG-GGAGGTAG 736
|||||||||||||||||||||||||||||||||||||||||| | | || || ||| |
Sbjct 540 TCCTTCGTTTGATCAAGGACGTCAAGGTAGTCGTTATGGTGGTCTTGGAGGCGGGGGTGG 599
Query 737 T--T--TTG--G---TGGAGGAGGAGGAGGTGGTGCTGGCAGTTATGGCGGCGGTGGTGC 787
| | | | | ||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 600 TGGTGCTGGCAGTTATGGCGGAGGAGGTGGTGGTGCTGGCAGTTATGGCGGCGGAGGTGG 659
Query 788 TGGTGCTGGTAGTGGAGGTGGAGGTGGATTCTCTAAAGCTGATGAGGTTGATAATTGGGC 847
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGTGCT-G--GT---GGTGGAGGTGGATTCTCTAAAGCTGATGAGGTTGATAATTGGGC 713
Query 848 AGCGGGTAAAGCAAAATCATCTACGTTTGGGTCGGGTTTCCGTGAATCCGGACCAGAGCC 907
|||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 714 AGCGGGTAAAGCAAAATCATCTACATTTGGGTCGGGTTTCCGTGACTCTGGACCGGAGCC 773
Query 908 TGACCGATGGGCTCGAGGAGTCCTTCCTTCTGGTGGTGGGGTTCAGGAAGAGCGACGTCG 967
|||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 774 TGACCGGTGGGCTCGAGGAGTCCTCCCTTCCGGTGGTGGTGTTCAGGAGGAGCGTCGTCG 833
Query 968 TCTTGTATTTGAACCACGAAAGGCTGATACAGAAGTGAGTGAAACTCCAACTGCTGTGAA 1027
||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||| |||
Sbjct 834 TCTTGTATTGGAACCACGAAAGGTTGATGCAGGAGTGAGTGAAACTCCAACTGCTGGGAA 893
Query 1028 GACGAGTAAGCCGAGTCCATTTGGAGCAGCTAGACCGAGAGAGCAAGTTTTGGCGGAGAA 1087
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 GACGAGTAAGCCAAACCCATTTGGAGCTGCTAGACCGAGAGAGCAAGTTTTGGCGGAGAA 953
Query 1088 AGGATTGGACTGGAAGAAACTTGACTCGGATATTGAGGCCAAGAAGGGACAAACAAGCAG 1147
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 AGGCTTGGACTGGAAGAAACTTGACTCGGATATTGAGGCCAAAAAGGGACAAACAAGCAG 1013
Query 1148 ACCATCAAGCGCGCAATCGAGCAGACCATCAAGTGCTCAATCTAACAGGTCTGAGAGTTC 1207
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 ACCATCGAGCGCGCAATCCAGCAGACCATCAAGTGCTCAATCTAACAGGTCCGAGAGTTC 1073
Query 1208 AGCATTGAACAATGTGGAGAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGTGA 1267
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1074 AGCATTGAACAATGTGGAGAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTCGGTGA 1133
Query 1268 TGCAAAACCTCGGGAAGTATTGCTGGAGGAACAAGGGAAAGATTGGCGCAAGATTGATTC 1327
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGCAAAACCTAGGGAAGTATTGCTGGAGGAACAAGGGAAAGATTGGCGCAAGATTGATTC 1193
Query 1328 TGAACTCGAGCATCGCAGGGTTGACAGGCCTGAAACAGAGGGAGAGAGGATGTTGAAGGA 1387
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 TGAACTCGAGCATCGCAGGGTTGACAGGCCTGAAACAGAAGGAGAGAGGATGTTGAAGGA 1253
Query 1388 AGAGATTGAAGAACTACGGAAGAAACTCGAGAAGGAGGCAGCCATTGCACCTGAGAGCAA 1447
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1254 AGAGATCGAAGAACTACGGAAGAAACTCGAGAAGGAAGCAGCTATTGCACCTGAGAGCAA 1313
Query 1448 GGAATCTCAACAGGAATCCGACAGTAATCACCAAAATCTACCGGATCTCATACGTGAGAA 1507
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1314 GGAATCTCAACAGGAATCCTACAGTAATCACCAAAATCTACCGGATCTCATACGCGAGAA 1373
Query 1508 AGAAAAGAACCTAGACTTACTGATCCGTGAGCTGGACGACAAAGTCAGGTTCAGGCCACG 1567
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1374 AGAAAAGGACCTGGACTTACTGATCCGTGAACTGGACGACAAAGTCAGGTTCAGGCCACG 1433
Query 1568 AGCAGTTGAGAGGCCTGGATCCAGTGCAAGCAGAGGCGGTTCCTATTCAGAAAGACCACA 1627
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1434 AGCAGTTGAGAGGCCTGGATCCAGTGCAAGCAGAGCCGGTTCCTATTCAGAAAGACCTCA 1493
Query 1628 TTCACGGGCTGGATCAATCGATGAGTCTAGGAGTGTTGAATCCATGGAAAGACCTAGATC 1687
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1494 TTCACGGGCTGGATCAATCGATGAGTCTAGGAACGTCGAATCCATGGAAAGACCTAGATC 1553
Query 1688 ACATGGCACAGGCGATAATTGGCCAAGACCAGTAGATGATCGAAGAAACTTCCAAGGAAG 1747
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 ACGTGGCACAGGCGATAATTGGCCAAGACCAGTAGATGATCGAAGAAACTTCCAAGGAAG 1613
Query 1748 CAAGGAACGTGGATTCTTCAACAACAGAAACTTCGACAGGTCATCGTCAG-CAAGGGAAG 1806
|||||||||||||||||||| |||||||||||||||||||||||| || | |||||||||
Sbjct 1614 CAAGGAACGTGGATTCTTCAGCAACAGAAACTTCGACAGGTCATCATC-GTCAAGGGAAG 1672
Query 1807 GATGGTAAAAAAGGAAAGGAAGGATGAAT 1835
||||||||||||||||| ||||||||||
Sbjct 1673 GATGGTAAAAAAGGAAACTAAGGATGAAT 1701
> Ahg484402 jgi|Araly1|484402|fgenesh2_kg.5__394__AT3G26400.1
Length=1666
Score = 566 bits (306), Expect = 3e-160
Identities = 677/849 (80%), Gaps = 53/849 (6%)
Strand=Plus/Plus
Query 948 GTTCAGGAAGAGCGACGTCGTCTT-GTATTT-GAACCACGAAAGGCTG-ATACAGAAGTG 1004
|||||||| || || |||||| || || ||| |||||||| |||| || || ||| || |
Sbjct 745 GTTCAGGAGGAACGTCGTCGT-TTGGT-TTTGGAACCACGGAAGGTTGAAT-CAGGAGCG 801
Query 1005 AGTGAAACTCCAACTG---CTGTGAAGACGAGTAAGCCGAGTCCATTTGGAGCAGCTAGA 1061
|||||||||||||||| || ||||||||||||||| | || |||||||||||||||
Sbjct 802 AGTGAAACTCCAACTGTTATTGAGAAGACGAGTAAGCCTAACCCGTTTGGAGCAGCTAGA 861
Query 1062 CCGAGAGAGCAAGTTTTGGCGGAGAAAGGATTGGACTGGAAGAA-ACTTGACTCGGATAT 1120
||||| ||| | ||||||||||||||||| ||||| |||||||| | ||||||| || ||
Sbjct 862 CCGAGGGAGGATGTTTTGGCGGAGAAAGGTTTGGATTGGAAGAAGA-TTGACTCAGAGAT 920
Query 1121 TGAGGCCAAG-AA-G-GG---ACAAACAAGCAGACCATCAAGCGCGCAATCGAGCAGACC 1174
|||||| ||| || | || ||||| || || ||| | || || || |||||||||||
Sbjct 921 TGAGGCTAAGAAAGGAGGTTCTCAAACGAGTAGGCCAACGAGTGCACATTCGAGCAGACC 980
Query 1175 ATCAAGTGCTCAATCTAACAGGTCTGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGT 1234
|| ||||||||||||||||||||||||||||||| ||| || | ||||||||
Sbjct 981 TTCTAGTGCTCAATCTAACAGGTCTGAGAGTTCAGGGTTG---AA--T----AATGTGGT 1031
Query 1235 GAAACCGAGACCAAAGGTGAATCCTTTTGGTGATGCAAAACCTCGGGAAGTATTGCTGGA 1294
|||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||
Sbjct 1032 GAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAAGCCTCGAGAAGTGTTGCTAGA 1091
Query 1295 GGAACAAGGGAAAGATTGGCGCAAGATTGATTCTG-AACTCGAGCATCGCAGGGTTGACA 1353
|||||||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||
Sbjct 1092 GGAACAAGGGAAGGATTGGCGTAAGATGGATA-TGGAACTCGAGCATCGCAGGGTTGACA 1150
Query 1354 GGCCTGAAACAGAGGGAGAGAGGATGTTGAAGGAAGAGATTGAAGAACTACGGAAGAAAC 1413
||||||||||||| | ||| | ||||||||| |||||||||||||||| | |||| ||||
Sbjct 1151 GGCCTGAAACAGAAGAAGAAAAGATGTTGAAAGAAGAGATTGAAGAACAAAGGAAAAAAC 1210
Query 1414 TCGAGA-AGGAGGCAGCCATTGCACCTGAGAGCAAGGAATCTCAACAGGAATCCGACAGT 1472
||||| || | | | | | | |||| |||| || || ||| ||| | | |
Sbjct 1211 TCGAGCCAG-AT--ATCAAG-GAATCTGAT--CAAG-AACCTGG-CAGTAAT---A-A-T 1257
Query 1473 AATCACCAAA-ATCTACCGGATCTCATACGTGAGAAAGA-AAAGAACCTAGACTTACTGA 1530
|||||| || || |||| || | ||||||| |||||| ||||| | || |||| |
Sbjct 1258 AATCAC-AATGATTTACCAGAAATAATACGTGGGAAAGAGAAAGATT-TGGAAATACTAA 1315
Query 1531 TCCGTGAGCTGGACGACAAAGTCAGGTTCAGGCCACGAG-C-AGTTGAGAGGCCTGGATC 1588
|||||| |||||||||||||||||||||||| | || | |||||||||||| || ||
Sbjct 1316 CCCGTGAATTGGACGACAAAGTCAGGTTCAGGC-A-GAAACCAGTTGAGAGGCCCGGGTC 1373
Query 1589 CAGTGCAAGCAGAGGCGGTTCCTATTCAGAAAGACCACATTCACGGGCTGGATCAATCGA 1648
||||| ||||| ||| | |||||||||||| ||||||| |||||||||||||| ||
Sbjct 1374 TGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTCCCGGGCTGGATCAATTGA 1433
Query 1649 TGAGTCTAGGAGTGTTGAATCCATGGAAAGACCTAGATCACATGGCACAGGCGATAATTG 1708
||| | |||||| ||||||||| || ||||| ||||||| ||| | | |||| ||
Sbjct 1434 TGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACGTGGTGCCGTCGATGCCTG 1493
Query 1709 GCCAAGACCAGTAGATGATC-G--AAGAAACTTCCAAGGAAGCAAGGAACGTGGATTCTT 1765
| ||||||| ||||||| | ||||||||||||||||||||| || || ||||||||
Sbjct 1494 GGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAGCAAAGAGCGCGGATTCTT 1553
Query 1766 CAACAACAG 1774
|| ||||||
Sbjct 1554 CAGCAACAG 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82693921895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5