BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13030.1
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471456 jgi|Araly1|471456|fgenesh2_kg.1__1410__AT1G13030.1 2878 0.0
> Ahg471456 jgi|Araly1|471456|fgenesh2_kg.1__1410__AT1G13030.1
Length=2019
Score = 2878 bits (1558), Expect = 0.0
Identities = 1893/2048 (92%), Gaps = 49/2048 (2%)
Strand=Plus/Plus
Query 106 TACTTATCTGAAGTTCGTCTACGATGGAGGAAGAGAAGGTGAGGGTTCGTCTGGTGTTTG 165
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TACTTGTCTGAAGTTCGTCTACGATGGAGGAAGAGAAGGTGAGGATTCGTCTGGTGTTTG 60
Query 166 AAGACCGACGGATTCTGAGTAAGTATCAAAAGAAGCAAGGTTTAACACGGAGCTGGGTTG 225
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AAGACCGACGGATTCTGAGTAAGTATCAGAAGAAGCAAGGTTTAACACGGAGCTGGGTTG 120
Query 226 TTCTAAATCGTAAATGTCACCGAACTATATCAGAGTTTTCTGATCATATCTTTCACACAT 285
|||| ||||||||| |||| || ||| | |||||||||||||||||| ||||||||||||
Sbjct 121 TTCTGAATCGTAAACGTCAGCGTACTGTTTCAGAGTTTTCTGATCATCTCTTTCACACAT 180
Query 286 TTAGCCTCTGTGAAGCGTGTCCTCATGGCCTCTCTCTATCTATGGAAGGTTTCGTTTTGC 345
| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 181 TCAGCCTCTGTGAAGCTTGTCCTCTTGGCCTCACTCTATCTATGGAAGGTTTCGTTTTGC 240
Query 346 CACCTTTCGAGTCCAGCTGTGTATTGAAGGATAAAGATATCGTTTGTGTTAAGAAGAAGA 405
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACCGTTCGAGTCGAGCTGTGTATTGAAGGATAAAGATATCGTTTGTGTTAAGAAGAAGA 300
Query 406 AAGAGTCTTTGTTGGAGATTGTTGGGGAAGACAGTGATGAGAATGTTTACAACGCTATTG 465
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 301 AAGAATCTTTGTTGGAGATTGTTGGAGAAGACAGTGAGGAGAATGTTTACAACGCTATTG 360
Query 466 AGGTTGAGGAAAGGCCTCAGA-TTCGTCCTGGTGAAATGCTGCTTGCTAATGAGGAATTC 524
|||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AGGTTGAGGAGAGGCCTCA-ATTTCGTCCTGGTGAAATGCTTCTTGCTAATGAGGAATTC 419
Query 525 CAGAAGGAAACTGGAGGATATGAAAGTGAGTCTGAGGAAGATGAGCTTGAAGAGGAAGCA 584
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CAGAACGAAACTGGAGGATATGAAAGTGAGTCTGAGGAAGATGAGGTTGAAGAGGAAGCA 479
Query 585 GAAGAGTTTGTGCCAGAGAAGAAGGCTTCGAAGAAACGTAAAACTTCAAGCAAAAACC-A 643
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||| || |
Sbjct 480 GAAGAGTTTGTGCCAGAGAAGAAGACTTCTAAGAAACGTAAAGCTTCCAGCAAAAGCCTA 539
Query 644 GAGCACCAAGAGGAAGAAGTGTAAGTTAGATACTACTGAAGAATCTCCCGACGAAAGAGA 703
||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 540 -AGCTCCAAGAGGAAGAAGTGTAAGTTAGCTACTACTGAGGAATCTCCCGAGGAAAGAG- 597
Query 704 AAACACAGCTGTTGTTAGCAATGTTGTgaagaagaagaagaagaagaaATCATTGGATGT 763
||| ||| | ||| |||||| |||||||||||||||||||||||||||
Sbjct 598 AAA-ACA-C-------AGC--TGTTGT------GAAGAAGAAGAAGAAATCATTGGATGT 640
Query 764 ACAAAGT-GCT-AACAATGATGAACAGAATAACGATAGTACCAAACCCATGACCAAATCA 821
||||| | ||| || |||||||||||| |||||| || ||||| ||||| |||||||||
Sbjct 641 ACAAA-TAGCTGAA-AATGATGAACAGGATAACGGTAACACCAAGCCCATTACCAAATCA 698
Query 822 AAGAGGTCATCACAACAAGAAGAGAGCAAAGAGCATAACGATCTGTGCCAACTATCTGCT 881
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 699 AAGAGGTCATCGCAACAAGAAGAGAGCAAAGAGCCTAACGATCTGTGCCAACTATCTGGT 758
Query 882 GAAACTAAAAAGACACCTAGCAGAAGTGCCCGACGTAAAAAGGCGAAACGGCAATGGCTG 941
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 759 GAAACTAAAAAGACACCTAGCAGAAGTGCTCGACGTAAAAAGGCGAAACGGCAATGGTTG 818
Query 942 AGAGAGAAAACAAAACTAGAGAAGGAAGAGCTTCTACAGACGCAGTTGGTTGTAGCACCC 1001
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 819 AGAGAGAAAACAAAACTAGAGAAGGAAGAGCTTCAACAGAAGCAGTTGGTTGTAGCACCC 878
Query 1002 AGCCAAAAACCAGTCATCACTATAGATCACCAAGCAACCAAGGAAAAGCACTGTGAAACT 1061
|| |||||||||||||| ||||||||| ||||||||||| ||||| | ||||||||| ||
Sbjct 879 AGTCAAAAACCAGTCATTACTATAGATTACCAAGCAACCGAGGAACATCACTGTGAAGCT 938
Query 1062 CTTGAAAATCAACAGGCAGAAGAAGTTAGTGATGGTTTCGGGGATGAAGTTGTACCTGTG 1121
||||||||||||||| |||| ||| ||||||||||| ||||||||||||| || ||||||
Sbjct 939 CTTGAAAATCAACAGCCAGATGAACTTAGTGATGGTGTCGGGGATGAAGTGGTTCCTGTG 998
Query 1122 GAAGTGAGGCCAGGCCACATACGCTTCAAGCCTCTCGCTGGAACAGATGAAGCCT-CTCT 1180
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| || | ||
Sbjct 999 GAAGTGAGGCCAGGCCACATTCGCTTCAAGCCACTCGCTGGAACAGATGAAG-CTCCCCT 1057
Query 1181 TGATAGTGAACCTCTTGTGG-AAAATGTCTTGTGGAATGGAAACATGACGAAGAAGAAGG 1239
||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 1058 TGAAAGTGAACCTCTTGTGGAAAAAT-TCTTGTGGAATGGAAACATGACGAAGAAGAAAG 1116
Query 1240 GACAGAAATGGGGCACAGAGAAGTCAGGGTTTTCCAAACGATATGCTCAGGATTTTAATG 1299
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1117 GACAGAAATGGGGCACAGAGAAGGCAGGATTTTCCAAACGATATGCTCAGGATTTCAATG 1176
Query 1300 AAG--A-TGC-TA-C-GACACAGCCCGCTGAAGCAGAGACACTTGCTAATTGTCCGATTG 1353
||| | | | || | ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1177 AAGATACTACTTATCAGACACAGCCCGCTGAAGCAGAGACACTTGCTAAGGGTCCGATCG 1236
Query 1354 ATTATGAACAGCTTGTGGCTTACACTGGCTCAGTAAAGAAAGGAGATGTTATTGCATACC 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 ATTATGAACAGCTTGTGGCTTACACTGGCTCAGTAAAGAAAGGAGATGTTATTGCATACC 1296
Query 1414 GCCTCATTGAGTTAACATCATCTTGGACACCCGAGGTTTCCTCTTTTCGGGTTGGGAAGA 1473
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1297 GCCTCATTGAGCTAACATCATCTTGGACACCAGAGGTTTCCTCTTTTCGGGTTGGGAAGA 1356
Query 1474 TAAGCTACTATGATCCAGACTCCAAGATGGTGACTTTGATGCCTGTTCAAGAATTTCCAA 1533
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1357 TAAGCTACTATGATCCAGACTCCAAGAAGGTGACTTTGATGCCTGTTCAAGAATTTCCAA 1416
Query 1534 TCGAGAAAAAGACAGAAGAGGACGACGATTTCTGTATGCAACCTGATACATCTCTTTATA 1593
||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1417 TCGAGAAAAAGACAGAAGAGGGCGACGATTTCTCCATGGAACCTGATACATCTCTTTATA 1476
Query 1594 AAGAAGATGGATCCCTGGAGATAGAATTTTCTGCTCTGCTCGATGTTCGCAGTGTCAAAA 1653
||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1477 AAGAAGACGGATCCTTGGAGATAGAATTTTCTGCTCTGCTCGATGTCCGCAGTATCAAAA 1536
Query 1654 CTAGCAGCTCAGATTCTGCAGAAGTCGCCAAGTCAGCACTGCCCGAGCCTGACCAGTCAG 1713
|||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1537 CTAGGTGCTCAGATTCCACAGAAGTCGCCAAGTCAGCACCGCCCGAGCCTGACCAGTCAG 1596
Query 1714 CTAAAAAGCCAAAGCTAAGCGCAAACAAAGAATTGCAAACCCCTGCAAAAGAAAATGGAG 1773
||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1597 CTACAAAGCTAAAGCTAAGCGCAAACAAAGATTTGCAAACCCCTATAAAAGAAAATGGAA 1656
Query 1774 AAGTGAGCCCTTGGGAAGAACTAAGTGAAGCTTTAAGTGC-AAAGAAAGCAGCGTTGTCT 1832
|||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 1657 AAGTGAACCCTTGGGAAGAACTAAGTGAAGCTTTAAGTGCGAAA-AAAGCAGAATTGTCT 1715
Query 1833 CAGGCCAACAATGGGTGGAACAAGAAAGGGAGTTCAAGT---GGAGGCTCATGGTCTTAC 1889
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1716 CAGGCCAACAATGGGTGGAACAAGAAAGGGAGTTCAAGTGGAGGAGGCTCATGGTCTTAC 1775
Query 1890 AAGGCACTGCGAGGCAGTGCTATGGGTCCTGTAATGAACTATCTCAGATCTCAGAAAGAG 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 AAGGCACTGCGAGGCAGTGCTATGGGTCCTGTAATGAACTATCTCAGATCTCAGAAAGAG 1835
Query 1950 ATTTGAGAAA-CTAGGTCACATCTCTCTAGAAGAAACTCTGCTGCTTTTGTCTTCATTTT 2008
|||||||||| | ||| ||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1836 ATTTGAGAAATC-AGGACACATCTCT--AGAAGAAACTCTGATGCTTTTTTCTTCATTTT 1892
Query 2009 GGAT-ATGAAAAACTCAGACAAAGGGTAGAGAAAGCCATTTTGTTTTTGATGCTGT-AAA 2066
|||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 1893 GGATTATGAAAAACTCAGACAAAGAGTAGAGAAAGCCATTTTGTTTT-GATGCTGTGAAA 1951
Query 2067 CGCACAGTTTAGCTTTCTAAGGTTAAAGGTTTATGTATAGAGAAAAACGATGAATGTGTA 2126
|||| | | |||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 1952 -GCACTGCTGAGCTTTCTAAGGGTAAAGGTTTATGTATAGAGAAAAACGACGCATGTGTA 2010
Query 2127 ATACTCTC 2134
|||||||
Sbjct 2011 CTACTCTC 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82655831650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5