BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13050.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471458 jgi|Araly1|471458|fgenesh2_kg.1__1412__AT1G13050.1 1574 0.0
> Ahg471458 jgi|Araly1|471458|fgenesh2_kg.1__1412__AT1G13050.1
Length=954
Score = 1574 bits (852), Expect = 0.0
Identities = 921/955 (96%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 187 ATGTCTCACCACCACTATGAAACCAACCCTCATTTCGTTCAATTTTCCTTGCAGGATCAA 246
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTCTCACAACCACTATGAAACCAACCCTCATTTCGTTCAGTTTTCCTTGCAGGATCAA 60
Query 247 CATCAAGGTGGTCCTTCTAGCTCATGGAACTCTCCGCACCATCACCAGATCCCACAGGCT 306
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CATCCCGGTGGTCCTTCTAGCTCATGGAACTCTCCGCACCATCATCAGATCCCACAGGCT 120
Query 307 CACTCAGTTGCTCCACCCAGGGTGAAAATAAAGACTCGGGGACGCCACCAGACTGAGCCA 366
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CACTCAGTTGCTCCACCAAGGGTGAAAATAAAAACTCGGGGACGCCACCAGACTGAGCCA 180
Query 367 CCTGAAACAATCCATGAATCGCCTTCCTCAAGACCCTTGCCACTGAGACCGGAGGAACCA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTGAAACAATCCATGAATCGCCTTCCTCAAGACCCTTGCCACTGAGACCGGAGGAACCA 240
Query 427 TTACCACCACGCCATAATCCAAACTCTGCCAGGCCATTGCAATTGAGCCCTGAGGAGCAA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTACCACCACGCCATAATCCAAACTCTGCCAGGCCATTGCAATTGAGCCCTGAGGAGCAA 300
Query 487 CGACCTCCACACCGTGGCTATGGATCTGAACCAACTCCATGGAGAAGAGCTCCAACACGA 546
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 301 CGACCTCCACACCGTGGCTATGGATCTGAACCAACTCCATGGAGAACAGCTCCAAGACGA 360
Query 547 CCAGCTT-ATCAGCAAGGCCCAAAGAGGACCAAACCCATGACATTGCCAGCCACAATCTG 605
|||| | |||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAG-TGCATCAACCTGGTCCAAAGAGGACCAAACCCATGACATTGCCAGCCACAATCTG 419
Query 606 CTGTGCAATTCTCCTGATCGTCCTAATTTTATCAGGTCTCATTCTCCTCTTAGTCTACCT 665
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CTGTGCAATTCTCCTGATCGTCCTAATTTTATCCGGTCTCATTCTCCTCTTAGTCTACCT 479
Query 666 CGCCAACCGTCCACGCTCACCATACTTCGACATCTCAGCAGCAACCCTAAACACCGCCAA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGCCAACCGTCCACGCTCACCATACTTCGACATCTCAGCAGCAACCCTAAACACCGCCAA 539
Query 726 TCTGGACATGGGATATGTTCTAAATGGAGATCTCGCGGTTGTGGTAAACTTCACAAATCC 785
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 540 TCTGGACATGGGATATGTTCTAAATGGAGATCTCGCTGTTGTGGTAAACTTCACAAACCC 599
Query 786 AAGCAAGAAAAGCAGTGTGGACTTCAGCTACGTGATGTTCGAGCTCTACTTCTACAACAC 845
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 AAGCAAGAAAAGCAGTGTGGACTTCAGCTACGTGATGTTCGAACTCTACTTCTACAACAC 659
Query 846 ACTCATAGCGACTGAACACATCGAGCCATTCATTGTACCAAAGGGAATGTCAATGTTCAC 905
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACTCATAGCCACCGAACACATTGAGCCATTCATTGTACCAAAGGGAATGTCAATGTTCAC 719
Query 906 AAGCTTCCATCTCGTCAGCAGTCAGGTACAAATTCAGATGATTCAGAGTCAGGACTTGCA 965
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 AAGCTTCCATCTCGTCAGCAGTCAGGTACAAATTCAGATGATTCAGAGCCAGGACTTGCA 779
Query 966 GCTGCAGCTCGGAACTGGTCCAGTGTTGTTGAATTTGAGAGGAACGTTTCACGCTCGCTC 1025
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 GCTGGAGCTCGGAACCGGTCCAGTGTTGTTGAACTTGAGAGGAACGTTTCACGCTCGCTC 839
Query 1026 GAACCTTGGGTCGTTGATGAGATACTCTTATTGGTTGCACACACAGTGCAGCATCTCTTT 1085
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 GAACCTCGGGTCGTTGATGAGATACTCTTATTGGTTGCACACACAGTGCAGCATCTCGTT 899
Query 1086 AAATACCCCTCCTGCAGGGACCATGCGAGCAAGAAGATGCAATACAAAACGCTAG 1140
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 900 GAATACCCCTCCTTTAGGGACCTTGCGAGCAAGAAGATGCAGTACAAAACGCTAG 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5