BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13060.2
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471459 jgi|Araly1|471459|fgenesh2_kg.1__1413__AT1G13060.1 1195 0.0
Ahg484397 jgi|Araly1|484397|fgenesh2_kg.5__389__AT3G26340.1 719 0.0
Ahg911093 jgi|Araly1|911093|Al_scaffold_0001_1347 420 1e-116
Ahg920173 jgi|Araly1|920173|scaffold_101454.1 399 2e-110
> Ahg471459 jgi|Araly1|471459|fgenesh2_kg.1__1413__AT1G13060.1
Length=1021
Score = 1195 bits (647), Expect = 0.0
Identities = 713/744 (96%), Gaps = 7/744 (1%)
Strand=Plus/Plus
Query 493 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTG 552
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 262 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCGTATATGCTCGGTACGATGGCTG 321
Query 553 GAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 612
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GAGGAGCTGCTGACTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 381
Query 613 AGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAACTTCTTGCCAACATGC 672
|||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||
Sbjct 382 AGCTGGCAAACAAGAGGAGAATCTCTGTGTCCGGAGCATCAAAACTACTTGCGAACATGC 441
Query 673 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAA 732
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 442 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAA 501
Query 733 CTGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTT 792
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CTGGTCCTGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTT 561
Query 793 CAGTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATA 852
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 562 CAGTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGGGTACAAATACGATA 621
Query 853 TGTCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTG 912
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 622 TGTCAGTTGAAGAAGCTTCGGAGTTAGCAAGGAGATCGATCTACCATGCGACATTCCGTG 681
Query 913 ATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAAC 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAAC 741
Query 973 TATCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCG 1032
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 742 TATCAGGAGATGATGTTGGGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCG 801
Query 1033 CAGAACAAGTCATGGAGGAAGCAACAGCCGAATAA-AAATCCTGTTTAGTTTTCTAATCG 1091
|||||||||| |||||||||||||||||||| ||| ||| | ||||| ||||||||||||
Sbjct 802 CAGAACAAGTGATGGAGGAAGCAACAGCCGAGTAATAAA-CATGTTTCGTTTTCTAATCG 860
Query 1092 TTCACTCCCTTT-CTTGTTGTTGCATTTTGTGGTAGTATATACTGAGTTGTCTCTAGCTG 1150
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 861 TTCACTCCCTTTTCT-GTTGTTGCATTTTGTGGTAGTACATACTGAGTTGTCTCTAGCTG 919
Query 1151 AAGCTTTGGTATTCTATTTTACTGATCTGAAATGTTGCTCGCGGA-TTATTCTCTATAAG 1209
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 920 AAGCTTTGGTATTCTATTTTACTGATCTGAAATGTTGCTCGCA-ACTTATTCTCTATGAG 978
Query 1210 ATTCTCTTTTT-CTGCAATCACAT 1232
||||||||||| ||||||||||||
Sbjct 979 ATTCTCTTTTTTCTGCAATCACAT 1002
Score = 451 bits (244), Expect = 5e-126
Identities = 254/259 (98%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 160 GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTCGAGACTTCCATGCCTATGATTGGAT 219
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1 GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTTGAGACTTCCATGCCCATGATTGGAT 60
Query 220 TTGGCTCGAGCAGTGATATGCTTGATGAGCTTTCTTCTGTACCCTCGTTTGATCTACCCC 279
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTGGCTCGAGCAGTGATATGCTTGATGAGCTTTCTTCTGTGCCCTCGTTTGATCTACCCC 120
Query 280 GTACTAAAGAGTTTGATGGATTTCAGAAAAAAGCTAAAGACATGTTGAAGCATGCAAAAG 339
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GTACAAAAGAGTTTGATGGATTTCAGAAAGAAGCTAAAGACATGTTGAAGCATGCAAAAG 180
Query 340 GAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGG 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGG 240
Query 400 CTAGCATGGGAGGATATAT 418
|||||||||||||||||||
Sbjct 241 CTAGCATGGGAGGATATAT 259
> Ahg484397 jgi|Araly1|484397|fgenesh2_kg.5__389__AT3G26340.1
Length=1078
Score = 719 bits (389), Expect = 0.0
Identities = 516/576 (90%), Gaps = 13/576 (2%)
Strand=Plus/Plus
Query 498 CAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTGGAGGA 557
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 369 CAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGA 428
Query 558 GCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATGAGCTG 617
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 429 GCTGCTGATTGCCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTACATGAGCTG 488
Query 618 GCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAA-CTTCTTGCCAACATGCTCTA 676
|||||||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||||
Sbjct 489 GCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTC-AAAGCTTCTTGCTAACATGCTCTA 547
Query 677 TTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACTGG 736
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 548 TTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGATGAAACAGG 607
Query 737 TCCC-GGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCAG 795
||| ||| | |||||||| |||||||||||||||||||| ||||||||||| || || |
Sbjct 608 -CCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTG 666
Query 796 TCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATAT-GATATG 854
||||||| ||||||||||| ||||||||||| |||||| |||| ||||||| | ||||||
Sbjct 667 TCGGTTCCGGTTCACCATACGCTTACGGTGTTCTGGACTGCGGATACAAAT-TCGATATG 725
Query 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914
|| ||||||||||| || ||||||||||||||||| || ||||| || ||||||||||||
Sbjct 726 TCGGTTGAAGAAGCCTCGGAGTTAGCAAGGAGATCCATATACCACGCCACATTCCGTGAT 785
Query 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCC-CGAAGGATGGACGAAACT 973
||||| |||||||||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 786 GGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCTC-AAGGATGGAAGAAACT 844
Query 974 ATCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAG-CTACCG 1032
|| ||||| || || || |||||||| |||||||| ||||||||| | |||| | ||||
Sbjct 845 CTCTGGAGACGACGTCGGCGAGCTACATTACCATTATTACCCCGTGACTCCAGTC-ACCG 903
Query 1033 CAGAACAAGTCATGGAGGAAGCAACAGCCGAATAAA 1068
| ||||| || ||||| || || ||||||||||
Sbjct 904 CGGAACATGTGATGGAAGAGGCT---GCCGAATAAA 936
> Ahg911093 jgi|Araly1|911093|Al_scaffold_0001_1347
Length=342
Score = 420 bits (227), Expect = 1e-116
Identities = 301/333 (90%), Gaps = 20/333 (6%)
Strand=Plus/Plus
Query 735 GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCA 794
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 30 GGTCCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCA 89
Query 795 GTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATATG 854
|||||||||||||||||||| ||||||||||| ||||||||| || | || |
Sbjct 90 GTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGC-GG------T-TG--A-- 137
Query 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914
| | | || |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 138 --A---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGAT 189
Query 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 249
Query 975 TCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCGCA 1034
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 250 TCAGGAGATGATGTTGAGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCGCA 309
Query 1035 GAACAAGTCATGGAGGAAGCAACAGCCGAATAA 1067
|||||||| |||||||||||||||||||| |||
Sbjct 310 GAACAAGTGATGGAGGAAGCAACAGCCGAGTAA 342
> Ahg920173 jgi|Araly1|920173|scaffold_101454.1
Length=440
Score = 399 bits (216), Expect = 2e-110
Identities = 234/243 (96%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 493 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTG 552
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 64 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACGATGGCTG 123
Query 553 GAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 612
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 124 GAGGAGCTGCAGATTGCCAATTTTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 183
Query 613 AGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAACTTCTTGCCAACATGC 672
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 184 CGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCAAAACTTCTTGCGAACATGC 243
Query 673 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAA 732
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 244 TGTATTCATACCGAGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAA 303
Query 733 CTG 735
|||
Sbjct 304 CTG 306
Score = 99.0 bits (53), Expect = 8e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 369 GGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTC 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 GGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTC 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5