BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13060.2 Length=1280 Score E Sequences producing significant alignments: (Bits) Value Ahg471459 jgi|Araly1|471459|fgenesh2_kg.1__1413__AT1G13060.1 1195 0.0 Ahg484397 jgi|Araly1|484397|fgenesh2_kg.5__389__AT3G26340.1 719 0.0 Ahg911093 jgi|Araly1|911093|Al_scaffold_0001_1347 420 1e-116 Ahg920173 jgi|Araly1|920173|scaffold_101454.1 399 2e-110 > Ahg471459 jgi|Araly1|471459|fgenesh2_kg.1__1413__AT1G13060.1 Length=1021 Score = 1195 bits (647), Expect = 0.0 Identities = 713/744 (96%), Gaps = 7/744 (1%) Strand=Plus/Plus Query 493 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTG 552 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 262 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCGTATATGCTCGGTACGATGGCTG 321 Query 553 GAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 612 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 GAGGAGCTGCTGACTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 381 Query 613 AGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAACTTCTTGCCAACATGC 672 |||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||| Sbjct 382 AGCTGGCAAACAAGAGGAGAATCTCTGTGTCCGGAGCATCAAAACTACTTGCGAACATGC 441 Query 673 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAA 732 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 442 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAA 501 Query 733 CTGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTT 792 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 CTGGTCCTGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTT 561 Query 793 CAGTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATA 852 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 562 CAGTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGGGTACAAATACGATA 621 Query 853 TGTCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTG 912 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 622 TGTCAGTTGAAGAAGCTTCGGAGTTAGCAAGGAGATCGATCTACCATGCGACATTCCGTG 681 Query 913 ATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAAC 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 ATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAAC 741 Query 973 TATCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCG 1032 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 742 TATCAGGAGATGATGTTGGGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCG 801 Query 1033 CAGAACAAGTCATGGAGGAAGCAACAGCCGAATAA-AAATCCTGTTTAGTTTTCTAATCG 1091 |||||||||| |||||||||||||||||||| ||| ||| | ||||| |||||||||||| Sbjct 802 CAGAACAAGTGATGGAGGAAGCAACAGCCGAGTAATAAA-CATGTTTCGTTTTCTAATCG 860 Query 1092 TTCACTCCCTTT-CTTGTTGTTGCATTTTGTGGTAGTATATACTGAGTTGTCTCTAGCTG 1150 |||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 861 TTCACTCCCTTTTCT-GTTGTTGCATTTTGTGGTAGTACATACTGAGTTGTCTCTAGCTG 919 Query 1151 AAGCTTTGGTATTCTATTTTACTGATCTGAAATGTTGCTCGCGGA-TTATTCTCTATAAG 1209 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || Sbjct 920 AAGCTTTGGTATTCTATTTTACTGATCTGAAATGTTGCTCGCA-ACTTATTCTCTATGAG 978 Query 1210 ATTCTCTTTTT-CTGCAATCACAT 1232 ||||||||||| |||||||||||| Sbjct 979 ATTCTCTTTTTTCTGCAATCACAT 1002 Score = 451 bits (244), Expect = 5e-126 Identities = 254/259 (98%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 160 GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTCGAGACTTCCATGCCTATGATTGGAT 219 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1 GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTTGAGACTTCCATGCCCATGATTGGAT 60 Query 220 TTGGCTCGAGCAGTGATATGCTTGATGAGCTTTCTTCTGTACCCTCGTTTGATCTACCCC 279 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 61 TTGGCTCGAGCAGTGATATGCTTGATGAGCTTTCTTCTGTGCCCTCGTTTGATCTACCCC 120 Query 280 GTACTAAAGAGTTTGATGGATTTCAGAAAAAAGCTAAAGACATGTTGAAGCATGCAAAAG 339 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GTACAAAAGAGTTTGATGGATTTCAGAAAGAAGCTAAAGACATGTTGAAGCATGCAAAAG 180 Query 340 GAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGG 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGG 240 Query 400 CTAGCATGGGAGGATATAT 418 ||||||||||||||||||| Sbjct 241 CTAGCATGGGAGGATATAT 259 > Ahg484397 jgi|Araly1|484397|fgenesh2_kg.5__389__AT3G26340.1 Length=1078 Score = 719 bits (389), Expect = 0.0 Identities = 516/576 (90%), Gaps = 13/576 (2%) Strand=Plus/Plus Query 498 CAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTGGAGGA 557 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 369 CAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGA 428 Query 558 GCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATGAGCTG 617 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 429 GCTGCTGATTGCCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTACATGAGCTG 488 Query 618 GCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAA-CTTCTTGCCAACATGCTCTA 676 |||||||| ||||||||||||||||| |||||||| ||| |||||||| ||||||||||| Sbjct 489 GCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTC-AAAGCTTCTTGCTAACATGCTCTA 547 Query 677 TTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACTGG 736 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 548 TTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGATGAAACAGG 607 Query 737 TCCC-GGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCAG 795 ||| ||| | |||||||| |||||||||||||||||||| ||||||||||| || || | Sbjct 608 -CCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTG 666 Query 796 TCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATAT-GATATG 854 ||||||| ||||||||||| ||||||||||| |||||| |||| ||||||| | |||||| Sbjct 667 TCGGTTCCGGTTCACCATACGCTTACGGTGTTCTGGACTGCGGATACAAAT-TCGATATG 725 Query 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914 || ||||||||||| || ||||||||||||||||| || ||||| || |||||||||||| Sbjct 726 TCGGTTGAAGAAGCCTCGGAGTTAGCAAGGAGATCCATATACCACGCCACATTCCGTGAT 785 Query 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCC-CGAAGGATGGACGAAACT 973 ||||| |||||||||||||||||||||||||||||||| || | ||||||||| |||||| Sbjct 786 GGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCTC-AAGGATGGAAGAAACT 844 Query 974 ATCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAG-CTACCG 1032 || ||||| || || || |||||||| |||||||| ||||||||| | |||| | |||| Sbjct 845 CTCTGGAGACGACGTCGGCGAGCTACATTACCATTATTACCCCGTGACTCCAGTC-ACCG 903 Query 1033 CAGAACAAGTCATGGAGGAAGCAACAGCCGAATAAA 1068 | ||||| || ||||| || || |||||||||| Sbjct 904 CGGAACATGTGATGGAAGAGGCT---GCCGAATAAA 936 > Ahg911093 jgi|Araly1|911093|Al_scaffold_0001_1347 Length=342 Score = 420 bits (227), Expect = 1e-116 Identities = 301/333 (90%), Gaps = 20/333 (6%) Strand=Plus/Plus Query 735 GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCA 794 ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 30 GGTCCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCA 89 Query 795 GTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATATG 854 |||||||||||||||||||| ||||||||||| ||||||||| || | || | Sbjct 90 GTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGC-GG------T-TG--A-- 137 Query 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914 | | | || |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 138 --A---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGAT 189 Query 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 249 Query 975 TCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCGCA 1034 |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| Sbjct 250 TCAGGAGATGATGTTGAGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCGCA 309 Query 1035 GAACAAGTCATGGAGGAAGCAACAGCCGAATAA 1067 |||||||| |||||||||||||||||||| ||| Sbjct 310 GAACAAGTGATGGAGGAAGCAACAGCCGAGTAA 342 > Ahg920173 jgi|Araly1|920173|scaffold_101454.1 Length=440 Score = 399 bits (216), Expect = 2e-110 Identities = 234/243 (96%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 493 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTG 552 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 64 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACGATGGCTG 123 Query 553 GAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 612 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 124 GAGGAGCTGCAGATTGCCAATTTTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 183 Query 613 AGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAACTTCTTGCCAACATGC 672 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 184 CGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCAAAACTTCTTGCGAACATGC 243 Query 673 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAA 732 | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 244 TGTATTCATACCGAGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAA 303 Query 733 CTG 735 ||| Sbjct 304 CTG 306 Score = 99.0 bits (53), Expect = 8e-20 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 369 GGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTC 421 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12 GGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTC 64 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47844260835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5