BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13070.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471461 jgi|Araly1|471461|fgenesh2_kg.1__1415__AT1G13080.1 863 0.0
Ahg328572 jgi|Araly1|328572|fgenesh1_pm.C_scaffold_7000799 333 2e-90
> Ahg471461 jgi|Araly1|471461|fgenesh2_kg.1__1415__AT1G13080.1
Length=1597
Score = 863 bits (467), Expect = 0.0
Identities = 772/915 (84%), Gaps = 38/915 (4%)
Strand=Plus/Plus
Query 1 ATGGCGATCTTGTTCTGTTTCTTCTTGGTTTCGCTTGTTACTCTCGTATCATCAATCTTT 60
||| |||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||
Sbjct 5 ATGACGATCTTGCTCTGTTTCTTTTTAGTTTCACTTCTTACTCTCGTATCATCAATCTTT 64
Query 61 TTTAAACAGATCAAAAACACAAAATTTAATCTTCCTCCGAGCCCTCCT-AGTCTTCCGAT 119
|||||||||| |||||| | ||||| ||||| |||||||||||| | |||||||||||
Sbjct 65 CTTAAACAGATTAAAAACCCTAAATTCAATCTGCCTCCGAGCCCT-TTAAGTCTTCCGAT 123
Query 120 AATTGGAAACTTACACCATCTTACAGGATTGCCTCACAGATGTTATCATAAGCTCTCCAT 179
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||
Sbjct 124 CATCGGAAACTTACACCATCTCGCAGGATTGCCTCACAGATGTTTTCATAAGCTCTCGAT 183
Query 180 CAAATACGGTCCCGTGATAC-TTCTTC-ATCTCGGCTTTGTTCCAGTTGTTGTGATCTCA 237
||||||||| ||| || | | |||||| | ||||| |||||||||||||||||| |||||
Sbjct 184 CAAATACGGACCCTTGGT-CTTTCTTCGA-CTCGGGTTTGTTCCAGTTGTTGTGGTCTCA 241
Query 238 TTGAGCGAAGCAGCTGAAGCAGTACTCAAAACACATGATTTGGAATGTTGCAGCCGACCA 297
| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 242 TCGAGCGAAGCAGCTGAAGCAGTTCTCAGAACCCATGATTTGGAATGTTGCAGCCGACCA 301
Query 298 AAGACGGTGGGGACCGGAAAACTCTCTTACGGTTTTAAAGACATCAGTTTTGTGCCATAC 357
||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 302 AAGACGGTGGGGACCGGAAAACTCTCTTACGGTTTCAAAGACATCAGTTTCGCACCATAC 361
Query 358 AGTGAGTATTGGCGGGAAATGCGAAAACTCGCGGTTACCGAACTTTTTAGC-CTTAAAAA 416
||||||||||||| ||| |||||||||||||||||| ||| ||||||||| || |||||
Sbjct 362 GGTGAGTATTGGCGAGAAGTGCGAAAACTCGCGGTTATCGAGCTTTTTAGCTCT-AAAAA 420
Query 417 GGTTCAATCTTATAGGTATATAAGAGGGGAAGAGATCGAATTTATGGTGAAGAAATTGTC 476
||||||||||| |||||||||||||| ||||||| |||| |||||||| |||||| ||||
Sbjct 421 GGTTCAATCTTTTAGGTATATAAGAGAGGAAGAGGTCGACTTTATGGTCAAGAAAGTGTC 480
Query 477 AGAATCAGCTTTGAAGCAATCTCCTGTGGATCTA--C----C-TTCTTCTCCCTCACCGC 529
|||||||||||||||||| |||||||||||||| | | || ||||||||||||||
Sbjct 481 GGAATCAGCTTTGAAGCAAGCTCCTGTGGATCTAAGCAAAACCTTTTTCTCCCTCACCGC 540
Query 530 AAGCATAATTTTTAGAGTAGCCTTAGGG-CGGAATTTCCACGAGAGCGGCTCCATTATCG 588
|||||| |||| ||||||||| || ||| | ||||||||| || ||||||| ||||||
Sbjct 541 AAGCATCATTTGTAGAGTAGCTTT-GGGACAGAATTTCCATGAAAGCGGCTTTGTTATCG 599
Query 589 ATCAGGAGGGGATTGAAGAACTTGTTACCGCGGCTA-CA-ACAGCTATAGGAAGTTTTAC 646
|||| || |||| |||||||||||||||| | | | | |||| |||| | ||| ||
Sbjct 600 ATCAAGATAGGATCGAAGAACTTGTTACCGAATC-AGCGGA-AGCTCTAGGGACTTTCAC 657
Query 647 TTTCTCGGACTTCTTCCCAAGTGGACTTGGAAGATTCTTAGATTGCTTGTTTCGTACGCA 706
|||||| ||||||||||| ||||||||||||||||| ||||||| ||||||| ||| |
Sbjct 658 TTTCTCTGACTTCTTCCCTGGTGGACTTGGAAGATTCCTAGATTGGTTGTTTCA-ACG-A 715
Query 707 AACAA-A-TATAAACAAAGTCT-CGGAG-AAGCTTGATGCTTTTTACCAGCATGTGATTG 762
|||| | ||| |||||||||| | || || |||||||||||||| |||||||||||||
Sbjct 716 CACAAGAGTATTAACAAAGTCTTCA-AGGAA-CTTGATGCTTTTTATCAGCATGTGATTG 773
Query 763 ATGATCACTTGAAGCCATCAACTTT-GGATTCCTCCGGAGATATTGTTGCCTTGATGTTA 821
||||||||||||||||| | | ||| || ||||||||| ||||||| ||
Sbjct 774 ATGATCACTTGAAGCCAG-A-CGGAAGGAAAAATCA--AGATATTGTCACCTTGATTTTG 829
Query 822 GATATGATAAAGAAAAAAGGACATAA-AGATGATTTCAAGCTCAATGTGGATAA-CATCA 879
|||||||| | ||| ||| | || ||||| |||||| ||||| ||||||| | |||
Sbjct 830 GATATGATCGATAAACAAGAA-ATTTCAGATGCTTTCAAACTCAACATGGATAATC-TCA 887
Query 880 AAGCAGTCCTCATGG 894
| ||| | ||||||
Sbjct 888 AGGCAATTGTCATGG 902
Score = 593 bits (321), Expect = 1e-168
Identities = 520/614 (85%), Gaps = 21/614 (3%)
Strand=Plus/Plus
Query 1011 TATTTCTCGCGGGGATAGACACAG-GCGCCATAACAATGATTTGGGCGATGACCGAGCTC 1069
||||||||||||||||||| || | |||| |||| ||||||||||||||||| || ||
Sbjct 906 TATTTCTCGCGGGGATAGATAC-GAGCGCGGTAACTATGATTTGGGCGATGACAGAACTT 964
Query 1070 GTTAAAAAACCCT-TAGTGATGAAGAGAGCTCAAGAAAATATCCGAGGCGTCCTCGGGCT 1128
|| | ||||||| ||||||||||| ||||||||||||||| ||| | |||||| ||
Sbjct 965 ATT-AGAAACCCTAGAGTGATGAAGAAAGCTCAAGAAAATATTCGAACCACCCTCGGTCT 1023
Query 1129 CAAAAGAGATAGAATCACTGAAGAAGACCTATGCAAATTTGATTGCTTGAAACATATTGT 1188
|||||| || |||||||| |||||||| ||| ||||| |||| | |||||| || || |
Sbjct 1024 CAAAAGGGAAAGAATCACCGAAGAAGATCTAGGCAAAGTTGAGTACTTGAACCACATAAT 1083
Query 1189 CAAGGAAACATTAAGATTACACCCACCAGTTCCATTTTTGGTCCCAAGGGAAACAATATC 1248
|||||||||||| || ||||||||| || |||||||| |||| |||||||||||||| ||
Sbjct 1084 CAAGGAAACATTCAGGTTACACCCAGCACTTCCATTTGTGGTTCCAAGGGAAACAATGTC 1143
Query 1249 TCACATCAAGATTCAAGGCTACGATATTCCACCAAAAACGCAAATCCAAGTTAACGTATT 1308
|||||||||||| ||||||||||| ||||| || ||||||||||||| || | | |
Sbjct 1144 TCACATCAAGATCCAAGGCTACGACATTCCCCCGAAAACGCAAATCC-AG----C-T-TA 1196
Query 1309 ACGTATGGACGATCGGACGTGACCCCAAGCGTTGGACCGACCCTGAAGAATTCCGCCCTG 1368
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1197 ACGTGTGGACGATTGGACGTGACCCTAAGCGTTGGACCGACCCTGAAGAATTCATCCCTG 1256
Query 1369 A-ACGGTTTGCAAATACTTGTGTAGATTTTAGAGGACAACACTTTGACTT-TCTACCGTT 1426
| | | |||||||||| || |||||||||||||||||||||||||||| | | |||||||
Sbjct 1257 AGA-GATTTGCAAATAGTTCTGTAGATTTTAGAGGACAACACTTTGACCTAT-TACCGTT 1314
Query 1427 TGGTTCTGGTCGAAGGATCTGTCCCGCGATATCAATGGCGATTGCTACCGTGGAGCTAGG 1486
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||| || |
Sbjct 1315 TGGTTCTGGTCGAAGGATTTGTCCCGGGATGCCAATGGCGATTGCTACCGTGGAACTCGC 1374
Query 1487 ACTGATGAATTTGCTTGACTT-TTTCGATTGGAG-ATTGCCTGATGGGATGAAAGTTGAA 1544
| |||||||||||||| | || |||||||||||| || ||||||||||||||||| ||||
Sbjct 1375 ATTGATGAATTTGCTTTA-TTATTTCGATTGGAGTAT-GCCTGATGGGATGAAAGGTGAA 1432
Query 1545 GACATTGATATAGAAGAAGCTGGTAATGTCACGGTAGTCAAGAAACTACTTATTT-ACCT 1603
|||||||||| ||||||||||||||| || | | ||||||||| ||| | || || |
Sbjct 1433 AACATTGATATGGAAGAAGCTGGTAATATCTCCATTGTCAAGAAAATACCTCTTCGAC-T 1491
Query 1604 TGTGCCCCTTCAAC 1617
||||||| |||||
Sbjct 1492 TGTGCCCGGTCAAC 1505
> Ahg328572 jgi|Araly1|328572|fgenesh1_pm.C_scaffold_7000799
Length=504
Score = 333 bits (180), Expect = 2e-90
Identities = 381/474 (80%), Gaps = 30/474 (6%)
Strand=Plus/Plus
Query 33 GCTTGTTACTCTCGTATCATCAATCTTTTT--T-A-AACAGATCA-A-AAACACAAAATT 86
|||| ||||| | || |||| ||||||||| | | || || | | | |||| | ||||
Sbjct 36 GCTTCTTACTTTTGTGTCATTAATCTTTTTCATGACAA-AGGTAAGAGAAACCCTAAATG 94
Query 87 TAATCTTCCTCCGAGCCCTCCTAGTCTTCCGATAATTGGAAACTTACACC-ATCTT-ACA 144
|||||||||||| ||| ||| ||||| ||||| || ||||||||||||| || || ||
Sbjct 95 GAATCTTCCTCCGTGCCATCCAAGTCTCCCGATCATCGGAAACTTACACCAAT-TTCGCA 153
Query 145 GGATTGCCTCACAGATG-TTATCATAAGCTCTCCATCAAATACGGTCCCGTGATACTTCT 203
||||| |||||| |||| || |||| | ||||||||||||||||| |||||| |||||||
Sbjct 154 GGATTACCTCACCGATGCTT-TCATCATCTCTCCATCAAATACGGACCCGTGGTACTTCT 212
Query 204 TCATCTCGGCTTTGTTCCAGTTGTTGTGATCTCATTGAGCGAAGCAGCTGAAGCAGTA-C 262
||||| ||| ||||||||| | ||||||||||| | ||| ||||||||||||| || | |
Sbjct 213 TCATCGCGGGTTTGTTCCAATGGTTGTGATCTCCTCGAGTGAAGCAGCTGAAGAAG-ATC 271
Query 263 TCAAAACACATGA-TTTGGAATGTTGCAGCCGACCAAAG-ACGGTGGGGACCGGAAAACT 320
||||||| ||||| |||| ||||||||||||||| ||| ||||| || || || |||||
Sbjct 272 TCAAAACCCATGACCTTGG-ATGTTGCAGCCGACC-AAGAACGGTCGGCACGGGTAAACT 329
Query 321 CTCTTACGGTTTTAAAGACATCAGTTTTGTG-CCATACAGTGAGTATTGGCGGGAAATGC 379
||| ||||| |||||| |||| | | || ||| | ||| ||||||| ||||||
Sbjct 330 CTCCTACGG-----AAGACA-CAGTACCG-GCCCGTACGGCGAGCATTGGCGAGAAATGG 382
Query 380 GAAAACTCGCGGTTACCGAACTTTTTAGCCTTAAAAAGGTTCAATCTTATAGGTATATAA 439
|||| ||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 383 GAAAGCTCGCTTTTATCGAGCTTTTTAGCCTTAAAAAGGTTCAATCTTATAGGAATATCA 442
Query 440 GAGGGGAAGAGATCGAATTTATGGTGAAGAA-ATTGTCAG-AATCAGCTTTGAA 491
||| ||||||| | || || |||||||| || | |||| | |||| |||| |||
Sbjct 443 GAGAGGAAGAGGTGGAGTTCATGGTGAA-AATAGTGTC-GCAATCGGCTTCGAA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5