BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13080.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471461 jgi|Araly1|471461|fgenesh2_kg.1__1415__AT1G13080.1 2351 0.0
Ahg936320 jgi|Araly1|936320|scaffold_500511.1 278 1e-73
> Ahg471461 jgi|Araly1|471461|fgenesh2_kg.1__1415__AT1G13080.1
Length=1597
Score = 2351 bits (1273), Expect = 0.0
Identities = 1496/1602 (93%), Gaps = 21/1602 (1%)
Strand=Plus/Plus
Query 22 AAAAATGACGATCTTGCTCTGTTTCTTCTTAGTTTCACTTCTTACTATCGTATCATCAAT 81
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1 AAAAATGACGATCTTGCTCTGTTTCTTTTTAGTTTCACTTCTTACTCTCGTATCATCAAT 60
Query 82 CTTTCTTAAACAGAAT-AAAACCTCAAAATTCAATCTTCCCCCAAGCCCTTCAAGCCTTC 140
|||||||||||||| | |||||| | ||||||||||| || || ||||||| ||| ||||
Sbjct 61 CTTTCTTAAACAGATTAAAAACC-CTAAATTCAATCTGCCTCCGAGCCCTTTAAGTCTTC 119
Query 141 CGATCATTGGAAACTTACACCATCTCGCAGGATTGCCTCACAGATGTTTTCATAAGCTCT 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGATCATCGGAAACTTACACCATCTCGCAGGATTGCCTCACAGATGTTTTCATAAGCTCT 179
Query 201 CTATCAAATACGGACCCTTGGTCTTTCTTCGTCTCGGGTCTGTTCCGGTTGTTGTGATCT 260
| ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||
Sbjct 180 CGATCAAATACGGACCCTTGGTCTTTCTTCGACTCGGGTTTGTTCCAGTTGTTGTGGTCT 239
Query 261 CATCGAGTGAAGCAGCTGAAGCAGTTCTCAAAACCAATGACTTGGAATGTTGCAGCCGAC 320
||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||
Sbjct 240 CATCGAGCGAAGCAGCTGAAGCAGTTCTCAGAACCCATGATTTGGAATGTTGCAGCCGAC 299
Query 321 CAAAGACGGTGGGGAGCGGAAAACTCTCTTACGGTTTCAAAGACATCACTTTCGCACCAT 380
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 CAAAGACGGTGGGGACCGGAAAACTCTCTTACGGTTTCAAAGACATCAGTTTCGCACCAT 359
Query 381 ACGGTGAGTATTGGCGAGAAGTGCGAAAACTCGCGGTTATCGAGCTTTTTAGCTCTAAAA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGGTGAGTATTGGCGAGAAGTGCGAAAACTCGCGGTTATCGAGCTTTTTAGCTCTAAAA 419
Query 441 AGGTTCAATCTTTCAGGTATATAAGAGAGGAAGAGGTCGACTTCGTGGTCAAGAAAGTGT 500
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 AGGTTCAATCTTTTAGGTATATAAGAGAGGAAGAGGTCGACTTTATGGTCAAGAAAGTGT 479
Query 501 CAGAATCAGCTTTGAAGCAATCTCCTGTGGATTTAAGCAAAACCTTTTTCTCCCTCACCG 560
| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 480 CGGAATCAGCTTTGAAGCAAGCTCCTGTGGATCTAAGCAAAACCTTTTTCTCCCTCACCG 539
Query 561 CTAGTATCATTTGTAGAGTCGCCTTAGGACAGAATTTCAATGAAAGCGGCTTTGTTATCG 620
| || |||||||||||||| || || |||||||||||| |||||||||||||||||||||
Sbjct 540 CAAGCATCATTTGTAGAGTAGCTTTGGGACAGAATTTCCATGAAAGCGGCTTTGTTATCG 599
Query 621 ATCAAGACAGGATCGAAGAACTTGTTACCGAATCAGCAGAAGCTCTAGGGACTTTCACTT 680
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 ATCAAGATAGGATCGAAGAACTTGTTACCGAATCAGCGGAAGCTCTAGGGACTTTCACTT 659
Query 681 TCTCTGACTTCTTCCCTGGTGGACTTGGAAGATTTGTAGATTGGTTGTTTCAACGACACA 740
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 TCTCTGACTTCTTCCCTGGTGGACTTGGAAGATTCCTAGATTGGTTGTTTCAACGACACA 719
Query 741 AGAAG-ATCAACAAAGTCTTTAAGGAACTTGATGCTTTTTATCAGCATGTGATTGATGAT 799
||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGA-GTATTAACAAAGTCTTCAAGGAACTTGATGCTTTTTATCAGCATGTGATTGATGAT 778
Query 800 CACTTGAAGCCAGAGGGAAG-AAAGAATCAAGATATTGTCACCTTGATTTTGGATATGAT 858
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 779 CACTTGAAGCCAGACGGAAGGAAA-AATCAAGATATTGTCACCTTGATTTTGGATATGAT 837
Query 859 CGATAAACAAGAAGATT-CAGATTCTTTCAAACTCAACATGGATAATCTCAAGGCAATTG 917
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 CGATAAACAAGAA-ATTTCAGATGCTTTCAAACTCAACATGGATAATCTCAAGGCAATTG 896
Query 918 TCATGGATGTATTTCTCGCGGGGATAGATACAAGCGCGGTAACAATGATTTGGGCGATGA 977
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 897 TCATGGATGTATTTCTCGCGGGGATAGATACGAGCGCGGTAACTATGATTTGGGCGATGA 956
Query 978 CAGAACTTATTAGAAACCCTAGAGTGATGAAGAAGGCTCAAGAAAGTATTCGAACCACTC 1037
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 957 CAGAACTTATTAGAAACCCTAGAGTGATGAAGAAAGCTCAAGAAAATATTCGAACCACCC 1016
Query 1038 TGGGTCTCAAGAAGG-AAAGAATCACTGAAGAAGATTTAGGCAAAGTTGAGTATTTGAAC 1096
| |||||||| |||| |||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 1017 TCGGTCTCAA-AAGGGAAAGAATCACCGAAGAAGATCTAGGCAAAGTTGAGTACTTGAAC 1075
Query 1097 CACATACTCAAGGAAACTTTTAGGTTACACCCGGCACTTCCATTTGTGGTGCCAAGGGAA 1156
|||||| |||||||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1076 CACATAATCAAGGAAACATTCAGGTTACACCCAGCACTTCCATTTGTGGTTCCAAGGGAA 1135
Query 1157 ACAATGTCTCACATCAAGATCCAAGGCTATGATATTCCACCGAAAACACAAATCCAGCTT 1216
||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 1136 ACAATGTCTCACATCAAGATCCAAGGCTACGACATTCCCCCGAAAACGCAAATCCAGCTT 1195
Query 1217 AACGTGTGGACGATCGGACGTGACCCTAAGCGTTGGAATGACCCTGAAGAATTCAACCCT 1276
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1196 AACGTGTGGACGATTGGACGTGACCCTAAGCGTTGGACCGACCCTGAAGAATTCATCCCT 1255
Query 1277 GAAAGGTTTGCAAATAGCTCTGTAGATTTTAGAGGACAACATTTTGACCTATTACCGTTT 1336
|| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1256 GAGAGATTTGCAAATAGTTCTGTAGATTTTAGAGGACAACACTTTGACCTATTACCGTTT 1315
Query 1337 GGTTCTGGTCGAAGGATTTGTCCCGGAATGCCAATGGCGATTGCTAGTGTGGAACTAGCA 1396
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 1316 GGTTCTGGTCGAAGGATTTGTCCCGGGATGCCAATGGCGATTGCTACCGTGGAACTCGCA 1375
Query 1397 TTGATGAATTTGCTTTATTATTTTGATTGGAGTATGCCTGATGGGACT-AAAGGTGAAGA 1455
||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |
Sbjct 1376 TTGATGAATTTGCTTTATTATTTCGATTGGAGTATGCCTGATGGGA-TGAAAGGTGAAAA 1434
Query 1456 CATTGATATGGAAGAAGCTGGTAATATCTCTATTGTCAAGAAAATACCTCTTCAACTTGT 1515
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1435 CATTGATATGGAAGAAGCTGGTAATATCTCCATTGTCAAGAAAATACCTCTTCGACTTGT 1494
Query 1516 GCCTGTTCAACGTTATTGAT-GAGCAATAATATAAGCTCGATAACATGGAAAGTGTATGA 1574
||| | ||||| ||||| || ||||| ||||| ||||||||||||||||||| || ||||
Sbjct 1495 GCCCGGTCAACATTATTAATCGAGCAGTAATAGAAGCTCGATAACATGGAAAATGAATGA 1554
Query 1575 AGCAAAA----AACA----TAAGATTCTTTAGATTTTGTTGT 1608
||||||| || | ||| |||||||||||||||||||
Sbjct 1555 AGCAAAACTGCAAAAGACGTAACATTCTTTAGATTTTGTTGT 1596
> Ahg936320 jgi|Araly1|936320|scaffold_500511.1
Length=1547
Score = 278 bits (150), Expect = 1e-73
Identities = 1145/1599 (72%), Gaps = 174/1599 (11%)
Strand=Plus/Plus
Query 7 CAGAGGAAGAA-AAACAAAAATGACGATCTTGCTCTGTTTCTTCTTAG--TTT-C-ACTT 61
||||| ||||| ||| ||||||| | || || ||||||||| || | | ||| | ||||
Sbjct 1 CAGAGCAAGAACAAAAAAAAATGTCAATTTTCCTCTGTTTCCTC-TGGCTTTTGCTACTT 59
Query 62 CTTACTATCGTATC-ATCAATCTTTCTTAAACAGAA--TAAAACCTCAAAATTCAATCTT 118
||| | | ||| | || |||| ||| ||| | || | || |||||||| | || |||
Sbjct 60 CTT--T-TAGTAACAAT-AATC-TTCACAAA-AAAATCTCAATCCTCAAAACTGAAACTT 113
Query 119 CCCCCAAGCCCTTC-AAGCCTTCCGATCATTGGAAACTTACACCATC-TCGCAGGATTGC 176
|| ||| | || || || ||||||||||| |||||||||||| | | | | ||||| |
Sbjct 114 CCTCCAGGTCCATCGAA-ACTTCCGATCATCGGAAACTTACACTACCTTAAC-GGATTAC 171
Query 177 CTCACAGATGTTTTCATAAGCTCTCTATCAAA--TACGGACCCTTGGT-CTTTCTTC--G 231
|||||| |||| | || || || || | ||| ||||||| || | | | || |
Sbjct 172 CTCACAAATGTCTCCAAAACCTTTCGA--AAACCCACGGACCAGTGATGC-AGC-TCAAG 227
Query 232 TCTCGG-GTCTGTTCCGGTT-GTTGTGATCTCATCGAGTGAAGCAGCTGAAGCAGTTCTC 289
| | || || | ||| || || || ||||| || | ||||||| |||| |||||||
Sbjct 228 T-TAGGATTC-G-TCCCTTTGGTCGTAATCTCTTCAAACCAAGCAGCAGAAGAAGTTCTC 284
Query 290 AAAACCAATGACTTGGAATGTTGCAGCCGACCA-AAGACGGTGGGGAGCG-GAAA-AC-- 344
|||||||||||| | || ||||||||||||||| || || | |||| ||| ||
Sbjct 285 AAAACCAATGACCTAGATTGTTGCAGCCGACCAGAA-ACCAT----AGCGTCAAAGACAA 339
Query 345 TCTCTTACGGTTTCAAAGACATCACTTTCGCACCATACGGTG-AGTATTGGCGAGAAG-T 402
|||||||| |||||||||||| ||||| |||||||| | || | ||| ||| | |
Sbjct 340 TCTCTTACAACTTCAAAGACATCGGATTCGCTCCATACGGCGAAG-AATGGAGAG-CGTT 397
Query 403 GCGAAAACTCGCGGTTATCGAGCTTTTTAGCTCT-AAAAAGGTTCAA-TCTTTCAGGTAT 460
| | || ||||| || |||||||| || |||| | ||||| ||||| ||||| ||||||
Sbjct 398 GAGGAAGCTCGCTGTGATCGAGCTATTCAGCT-TGAAAAA-ATTCAACTCTTTTAGGTAT 455
Query 461 ATAAGAGAGGAAGAG-GTCGACTTCG-TGGTCAAGAAAGTGTCAGAATCAGCTTTGAAGC 518
|| ||||| |||||| | ||||| | ||||||||||| | || ||| | | ||| |
Sbjct 456 ATTAGAGAAGAAGAGAAT-GACTT-GTTGGTCAAGAAACTCTCTGAAGCTTCACAGAAAC 513
Query 519 AATCTCCTGTGGATTT-AAGCAAAACCTTTTTCTCCCTCA-CCGCTAGTATCATTTGTAG 576
|||||||||||||||| ||| ||| || ||||| | | | |||||||||| | |||||
Sbjct 514 AATCTCCTGTGGATTTAAAG-AAAGCCCTTTTC-ACTTTAGTCGCTAGTATCGTGTGTAG 571
Query 577 AGTCGCCTTAGGACAGAAT-TTCAATGAAAGCGGCTTTGTTATCGATCAAGACAGGATCG 635
| |||| || || || ||| ||| | | || | | | |||||||| |||| || || |
Sbjct 572 ACTCGCGTTCGGTCAAAATCTTC-ACG-AATCCG-AGT-TTATCGATGAAGATAGTAT-G 626
Query 636 AAGAACTTGTTA-C--CGA-ATCAGCAGAAG-CTCTAGG-GACTTTCACTTTCTCTGACT 689
|| | | ||| | | | |||| ||||| || ||| || ||| |||||||| | |
Sbjct 627 GAGGA--T-TTAGCGTCTAGGTCAG-AGAAGATTC-AGGCGAAATTCGCTTTCTCTAATT 681
Query 690 TCTTCCCTGGTGGACTTGGAAGAT-TTG-TAGATTGGTTGTTTCAACGACACAAGAAGAT 747
||||||| || || |||| | | ||| || | | | |||| | |||| || |
Sbjct 682 TCTTCCCCGGAGG--TTGG-A-TTCTTGATAAAATCACCG-GTCAA--A-GCAAG-AG-T 731
Query 748 C--AAC-AAAGTCTTTAAG--GAACTTGA-TGCTT-TTTATCAGCATGTGATTGATGATC 800
| ||| ||| | ||| | || || || | || |||| | || ||| | |||||||
Sbjct 732 CTTAACGAAA-T-TTT-CGCAGATCTCGACGGATTCTTTA--ACCAAGTGCTCGATGATC 786
Query 801 ACT-TGAAGCCA-GAGGGAAGA--A--AGA-A-TCAAGATATTGTCACCT-TGAT-TTTG 850
| | | |||||| || ||||| | ||| | || |||| |||| | |||| ||
Sbjct 787 A-TCTAAAGCCAGGA-AGAAGAGTATTAGAGACTCCAGATGTTGT-GGATGTGATGATT- 842
Query 851 GATATGATCG-ATAAAC-AAG--AAGATTCAGATTCTTTCAAACTCAAC-A-TGGATAAT 904
|||||||| | |||||| ||| |||| | | |||||| || ||| || | | ||| ||
Sbjct 843 GATATGAT-GAATAAACAAAGCCAAGA-T--GGTTCTTTTAAGCTC-ACTACT-GATCAT 896
Query 905 CTC-AAGGCAAT--TGTCATGGATGTATTTCTCG-CGGGGATAGATACAAGCGCGGTAAC 960
|| |||| ||| | || | ||| ||||||| | ||| | || | ||||| || ||
Sbjct 897 ATCAAAGG-AATCATCTC-T-GATATATTTCTTGCCGGAG-TAAACACAAGTGCAACGAC 952
Query 961 AATGATTTGGGCGATGACAGAACTT-ATTAGAAACCCTAGAGTGATGAAGAAGGCT-CAA 1018
|| ||||||| ||||||| | || || |||||||| |||||||||||||| | | |||
Sbjct 953 CATTCTTTGGGCAATGACAG-AGTTAATAAGAAACCCAAGAGTGATGAAGAAAG-TACAA 1010
Query 1019 GA-AAGTATTCGAACCACT-CTGGGTCTCAAGAAG-GAAAGAATCACTGAAGAAGAT-TT 1074
|| || || | | || | || ||| || ||| || |||||||| ||| ||||| ||
Sbjct 1011 GATGAG-GTTAGGA-CAGTACTTGGT-GAAAAAAGAGAGAGAATCACAGAACAAGATCTT 1067
Query 1075 AGGCAAAGTTGAGTATTTGAA-CCACAT-ACTCAAGGAAACTTTTAGGTTACACCCGGCA 1132
| | || || | || || || | | | | |||| || || || || |||||||| |||
Sbjct 1068 A-ACCAACTTAACTACTTCAAGCTA-GTGA-TCAAAGAGACATTCAGATTACACCCAGCA 1124
Query 1133 -CTTCCA-TTTGTGGTGCCAAGGGAAACAATGTCTCACATCAAGATCCAAGGCTATGATA 1190
| |||| ||| | | ||||| || ||||| || | |||||||||||||||||||| |
Sbjct 1125 GC-TCCACTTT-TATTACCAAGAGAGGCAATGGCTAAAATCAAGATCCAAGGCTATGACA 1182
Query 1191 TTCCACCGAAAACACAAATCCA-GCTTAACGTGT-GGACGATCGGACGTGACCCTAAGCG 1248
||||| ||||| || || || | | || || | | |||| ||||| || ||||| |
Sbjct 1183 TTCCAGAAAAAACTCAGAT-CATGGTCAATGTTTACG-CGATAGGACGCGATCCTAACCT 1240
Query 1249 TTGGAATG-ACCCTGAAGAATTCAACCCTGAAAGGTTTGCAAATAGCTCTGTAGATTTTA 1307
|||| | | | || ||||| || || || ||||| |||| |||| ||||| |||| |
Sbjct 1241 TTGGGA-GAATCCAGAAGAGTTTAAACCGGAAAGATTTGTTGATAGTTCTGTTGATTACA 1299
Query 1308 GAGGAC--AACATTTTGACCTATTACCGTTTGGTTCTGGTCGAAGGATTTGTCCCGGAAT 1365
|||||| ||| || || || || |||||||||||||||||||||||||||||||| ||
Sbjct 1300 GAGGACTTAAC--TTCGAGCTTTTGCCGTTTGGTTCTGGTCGAAGGATTTGTCCCGGTAT 1357
Query 1366 GCCAATGGCGATT-GCTAGTGTGGAACTAGCATTGATGAATTTGCTTTA-TTATTTTGAT 1423
| | |||| || | || | || ||| ||| |||| ||||||||||||| || ||| |||
Sbjct 1358 GACTATGG-GAATCGCGACAGTCGAATTAGGATTGTTGAATTTGCTTTACTTCTTT-GAT 1415
Query 1424 TGGAGTAT-GCCTGATGGGACTAAAGGTGAA-GACATTGATATGGAAGAAGCTGGTAATA 1481
||| | || |||||| || | | |||||| || || ||| ||||||||| ||| |
Sbjct 1416 TGGGG-ATTGCCTGAAGGAAGGAC-GGTGAAAGATATCGATTTGGAAGAAGAAGGTGCGA 1473
Query 1482 TCTCT-ATTGTCAAGAAAATACCTCTTCAACTTGTGCCT 1519
| | | |||| ||||||| | ||||| |||||||||||
Sbjct 1474 T-TATTATTGGCAAGAAAGTTTCTCTTGAACTTGTGCCT 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5