BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13100.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334612 jgi|Araly1|334612|fgenesh1_pg.C_scaffold_1001177 2206 0.0
Ahg471462 jgi|Araly1|471462|fgenesh2_kg.1__1416__AT1G13100.1 2141 0.0
Ahg320488 jgi|Araly1|320488|fgenesh1_pm.C_scaffold_4000545 994 0.0
Ahg936320 jgi|Araly1|936320|scaffold_500511.1 580 7e-165
> Ahg334612 jgi|Araly1|334612|fgenesh1_pg.C_scaffold_1001177
Length=1473
Score = 2206 bits (1194), Expect = 0.0
Identities = 1389/1482 (94%), Gaps = 18/1482 (1%)
Strand=Plus/Plus
Query 60 ATGGCAATCATCCTCTGTTTCCTCATT-CTCTTACCCCTTATCTTAATCTTCTTGAAAAA 118
|||| |||| |||||||||||||| || |||||||| |||||||| |||||||||||||
Sbjct 1 ATGGTAATCTTCCTCTGTTTCCTC-TTCCTCTTACCTCTTATCTTTATCTTCTTGAAAAT 59
Query 119 ACTCAAACATTCG------AAATGGAAGCTTCCTCCGGGGCCACCAAAGCTTCCGTTCAT 172
|||||| |||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 60 TTTCAAACCTTCGAAATATAAATGGAAGCTTCCTCCGGGCCCACCAAAGCTTCCAATCAT 119
Query 173 TGGAAACTTACACCAACTCCAAGAACTACCTCCCAGGAATCTCAACCACAAGTACGGGCC 232
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 120 CGGAAACTTACACCAACTCCAAGAACTACCTCCCAGGAATCTCTCCCACAAATACGGGCC 179
Query 233 AGTGATACTTCTCCGTTTCGGATTCGTCCCCTTGGTCGTGATCTCATCTAAAGAAGCAGC 292
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 AGTGATGCTTCTTCGTTTCGGATTCGTCCCCGTGGTCGTGATCTCATCTAAAGAAGCAGC 239
Query 293 AGAGGAAGTTCTCAAGATTCACGATCTTGAATGTTGTAGCCGACCAGAGACGGCCGGGAC 352
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAGGAAGTTCTCAAGATCCATGATCTTGAATGTTGTAGCCGACCAGAGACGGCCGGGAC 299
Query 353 TAGAAAGATCTCTTACAACTTTAAAGACATCGGATTCGCGCCTTACGGTGAGGAATGGAA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAGAAAGATCTCTTACAACTTTAAAGACATCGGATTCGCGCCTTACGGTGAGGAATGGAA 359
Query 413 GGCCATGCGAAAGCTCTCGGTGGTCGAACTCTTCACCGCCAAAAAACATCAGTATTTTAG 472
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 360 GGCCATGCGAAAGCTCTCGGTGGTCGAACTCTTCAACGCGAAAAAACATCAGTATTTTAG 419
Query 473 GTCTATCAGAGAGGAAGAGAATGACTTGTTGGTCAAGAAACTAACAGAATTGGCTCTGAC 532
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GTCAATCAGAGAGGAAGAGAATGACTTGTTGGTCAAGACACTAACAGAATTGGCTCTGAC 479
Query 533 ACGATCCCCGGTGAATTTGAAGAAGACCCTTTTCACTTTAGTCGGGAGTATTGTGTGTCG 592
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 480 ACGATCCCCAGTGAATTTGAAGAAGACCCTTTTCACTTTAGTCGGGAGTATCGTGTGTAG 539
Query 593 GATCGGATTCGGGTTTAATCTTCATGAGTGTGAGTTCATCGATGAAAATAGCATCTCCGA 652
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 540 GATCGGATTCGGGCTAAATCTTCATGAGTGTGAGTTCATCGATGAAGATAGCATCTCTGA 599
Query 653 CCTTGTTGACAAGTCTGAGATACTTGAGATGACTTCTATGTTCTCTGATTTCTTTCCAGG 712
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 TCTTGTTGACAAGTCAGAGATACTTGAGATGACTTCTATGTTCTCTGATTTCTTTCCCGG 659
Query 713 AGGAATCGGTAGATTCATCGATTGGATCTCCGGTCAAAACAAGCGATTCGATAATGTTTT 772
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 660 AGGAATCGGTAGATTCATCGATTGGATCTCCGGTCAAAACAAGCGGTTCAATAATGTTTT 719
Query 773 CTCGGACCTCGACACTTTCTTTCAAAACATTCTTGATTATCATCTTAAGCCTGGAAGAAA 832
||||||||| |||||||||||| | ||||||||| || |||||||||||||||||| |
Sbjct 720 CTCGGACCTGGACACTTTCTTTGAGAACATTCTTAATGATCATCTTAAGCCTGGAATA-- 777
Query 833 AGTAGCAGATAGCTCTGATATAATCGACGTGG-TGATCAACATGATAAAGAAGCAAGAGA 891
|||| ||| |||||||||| ||||||| || ||||||||||||| |||||||||||||
Sbjct 778 -GTAG-AGA--GCTCTGATATTATCGACG-GGATGATCAACATGATGAAGAAGCAAGAGA 832
Query 892 AAGATGGAGACTCTTTCAAGCTCACAACGGATCATCTTAAAGGGATGATCTCGGACATAT 951
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 833 GAGATGGAGACTCTTTCAAGCTCACGACGGATCATCTCAAAGGGATGATCTCGGACATAT 892
Query 952 TTCTAGCTGGAGTTAGCACAAGTGCCTCCACACTGATATGGGCGATAACAGAGTTAGTTA 1011
|| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 893 TTATAGCTGGAGTTAGCACAAGCGCCTCCACACTGATATGGGCGATAACCGAGTTAGTAA 952
Query 1012 GGAACCGTAAAGTGATGAAGAAAGTGCAAGAAGAGATTAGGACAACACTCGGAGACAAGA 1071
| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 953 GAAACCCTAAAGTGATGAAGAAAGTGCAAGACGAGATTAGGACAACACTCGGAGACAAAA 1012
Query 1072 AGGAGAGAATCACAGAGCAAGATCTCACCAATCTCCATTACTTCAAGCTTGTGGTCAAAG 1131
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1013 AGGAGAGAATCACAGAGCAAGATCTCACCAAGCTTCATTACTTCAAGCTGGTGGTCAAAG 1072
Query 1132 AGATATTCAGATTACACCCAGCAGTTCCATTTTTGCTACCAAGAGAGACATTATCTCATG 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1073 AGATATTCAGATTACACCCAGCAGTTCCATTTTTGCTACCAAGAGAGACATTGTCTCATG 1132
Query 1192 TCAAGATTCAAGGCTACGACATTCCCGCCAAAACCCAGATCATGATCAACGTCTATGCGA 1251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1133 TCAAGATTCAAGGCTACGACATTCCCGCCAAAACCCAGATCATGATCAATGTCTACGCGA 1192
Query 1252 TTGCTCGCGATCCAAAACTTTGGACAAACCCAGATGAGTTTAACCCTGACAGGTTCCTAG 1311
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||| ||||
Sbjct 1193 TTGCTCGCGATCCAGAACTCTGGATAAACCCAGATGAGTTTAACCCTGACAGGTTTCTAG 1252
Query 1312 ACAGTTCCATAGATTACAAAGGACTAAATTTTGAACTGTTACCGTTTGGGTCTGGTAGGA 1371
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATAGTTCCATAGATTACAAAGGACTAAATTTTGAACTGTTACCGTTTGGGTCTGGTAGGA 1312
Query 1372 GAATCTGTCCAGGAATGACGATGGGAATCACACTTGTTGAATTTGCTTTATTGAATTTGC 1431
||||||||||||| ||||| |||||||||||||||||||| || || |||||||||||||
Sbjct 1313 GAATCTGTCCAGGGATGACAATGGGAATCACACTTGTTGAGTTGGCATTATTGAATTTGC 1372
Query 1432 TTTACTTCTTTGATTGGGGTTTGCCGGAGAAGGAAGAGG-CGGACAAGATCATCACCGGC 1490
||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |
Sbjct 1373 TTTACTTCTTTGATTGGGGTTTGCCGGAGAAGGAAGAAGTCG-ACAAGATCATCACCGAC 1431
Query 1491 AATGGAGTTGCTGTTGGCCTAGTTCAAGTTCTTCTCCACTGA 1532
|||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1432 AATGAAGTTGCTCTTGGCCTAGTTCAAGTTCTTCTCCACTGA 1473
> Ahg471462 jgi|Araly1|471462|fgenesh2_kg.1__1416__AT1G13100.1
Length=1788
Score = 2141 bits (1159), Expect = 0.0
Identities = 1318/1395 (94%), Gaps = 10/1395 (1%)
Strand=Plus/Plus
Query 140 GCTTCCTCCGGGGCCACCAAAGCTTCCGTTCATTGGAAACTTACACCAACTCCAAGAACT 199
|||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 402 GCTTCCTCCGGGCCCACCAAAGCTTCCAATCATCGGAAACTTACACCAACTCCAAGAACT 461
Query 200 ACCTCCCAGGAATCTCAACCACAAGTACGGGCCAGTGATACTTCTCCGTTTCGGATTCGT 259
|||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 462 ACCTCCCAGGAATCTCTCCCACAAATACGGGCCAGTGATGCTTCTTCGTTTCGGATTCGT 521
Query 260 CCCCTTGGTCGTGATCTCATCTAAAGAAGCAGCAGAGGAAGTTCTCAAGATTCACGATCT 319
|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 522 CCCCGTGGTCGTGATCTCATCTAAAGAAGCAGCAGAGGAAGTTCTCAAGATCCATGATCT 581
Query 320 TGAATGTTGTAGCCGACCAGAGACGGCCGGGACTAGAAAGATCTCTTACAACTTTAAAGA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TGAATGTTGTAGCCGACCAGAGACGGCCGGGACTAGAAAGATCTCTTACAACTTTAAAGA 641
Query 380 CATCGGATTCGCGCCTTACGGTGAGGAATGGAAGGCCATGCGAAAGCTCTCGGTGGTCGA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CATCGGATTCGCGCCTTACGGTGAGGAATGGAAGGCCATGCGAAAGCTCTCGGTGGTCGA 701
Query 440 ACTCTTCACCGCCAAAAAACATCAGTATTTTAGGTCTATCAGAGAGGAAGAGAATGACTT 499
|||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 702 ACTCTTCAACGCGAAAAAACATCAGTATTTTAGGTCAATCAGAGAGGAAGAGAATGACTT 761
Query 500 GTTGGTCAAGAAACTAACAGAATTGGCTCTGACACGATCCCCGGTGAATTTGAAGAAGAC 559
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 762 GTTGGTCAAGACACTAACAGAATTGGCTCTGACACGATCCCCAGTGAATTTGAAGAAGAC 821
Query 560 CCTTTTCACTTTAGTCGGGAGTATTGTGTGTCGGATCGGATTCGGGTTTAATCTTCATGA 619
|||||||||||||||||||||||| |||||| |||||||||||||| | |||||||||||
Sbjct 822 CCTTTTCACTTTAGTCGGGAGTATCGTGTGTAGGATCGGATTCGGGCTAAATCTTCATGA 881
Query 620 GTGTGAGTTCATCGATGAAAATAGCATCTCCGACCTTGTTGACAAGTCTGAGATACTTGA 679
||||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||
Sbjct 882 GTGTGAGTTCATCGATGAAGATAGCATCTCTGATCTTGTTGACAAGTCAGAGATACTTGA 941
Query 680 GATGACTTCTATGTTCTCTGATTTCTTTCCAGGAGGAATCGGTAGATTCATCGATTGGAT 739
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 942 GATGACTTCTATGTTCTCTGATTTCTTTCCCGGAGGAATCGGTAGATTCATCGATTGGAT 1001
Query 740 CTCCGGTCAAAACAAGCGATTCGATAATGTTTTCTCGGACCTCGACACTTTCTTTCAAAA 799
|||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| | ||
Sbjct 1002 CTCCGGTCAAAACAAGCGGTTCAATAATGTTTTCTCGGACCTGGACACTTTCTTTGAGAA 1061
Query 800 CATTCTTGATTATCATCTTAAGCCTGGAAGAAAAGTAGCAGATAGCTCTGATATAATCGA 859
||||||| || |||||||||||||||||| | |||| ||| |||||||||| |||||
Sbjct 1062 CATTCTTAATGATCATCTTAAGCCTGGAATA---GTAG-AGA--GCTCTGATATTATCGA 1115
Query 860 CGTGG-TGATCAACATGATAAAGAAGCAAGAGAAAGATGGAGACTCTTTCAAGCTCACAA 918
|| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1116 CG-GGATGATCAACATGATGAAGAAGCAAGAGAGAGATGGAGACTCTTTCAAGCTCACGA 1174
Query 919 CGGATCATCTTAAAGGGATGATCTCGGACATATTTCTAGCTGGAGTTAGCACAAGTGCCT 978
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1175 CGGATCATCTCAAAGGGATGATCTCGGACATATTTATAGCTGGAGTTAGCACAAGCGCCT 1234
Query 979 CCACACTGATATGGGCGATAACAGAGTTAGTTAGGAACCGTAAAGTGATGAAGAAAGTGC 1038
|||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||
Sbjct 1235 CCACACTGATATGGGCGATAACCGAGTTAGTAAGAAACCCTAAAGTGATGAAGAAAGTGC 1294
Query 1039 AAGAAGAGATTAGGACAACACTCGGAGACAAGAAGGAGAGAATCACAGAGCAAGATCTCA 1098
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1295 AAGACGAGATTAGGACAACACTCGGAGACAAAAAGGAGAGAATCACAGAGCAAGATCTCA 1354
Query 1099 CCAATCTCCATTACTTCAAGCTTGTGGTCAAAGAGATATTCAGATTACACCCAGCAGTTC 1158
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1355 CCAAGCTTCATTACTTCAAGCTGGTGGTCAAAGAGATATTCAGATTACACCCAGCAGTTC 1414
Query 1159 CATTTTTGCTACCAAGAGAGACATTATCTCATGTCAAGATTCAAGGCTACGACATTCCCG 1218
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1415 CATTTTTGCTACCAAGAGAGACATTGTCTCATGTCAAGATTCAAGGCTACGACATTCCCG 1474
Query 1219 CCAAAACCCAGATCATGATCAACGTCTATGCGATTGCTCGCGATCCAAAACTTTGGACAA 1278
|||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||| ||
Sbjct 1475 CCAAAACCCAGATCATGATCAATGTCTACGCGATTGCTCGCGATCCAGAACTCTGGATAA 1534
Query 1279 ACCCAGATGAGTTTAACCCTGACAGGTTCCTAGACAGTTCCATAGATTACAAAGGACTAA 1338
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1535 ACCCAGATGAGTTTAACCCTGACAGGTTTCTAGATAGTTCCATAGATTACAAAGGACTAA 1594
Query 1339 ATTTTGAACTGTTACCGTTTGGGTCTGGTAGGAGAATCTGTCCAGGAATGACGATGGGAA 1398
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1595 ATTTTGAACTGTTACCGTTTGGGTCTGGTAGGAGAATCTGTCCAGGGATGACAATGGGAA 1654
Query 1399 TCACACTTGTTGAATTTGCTTTATTGAATTTGCTTTACTTCTTTGATTGGGGTTTGCCGG 1458
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TCACACTTGTTGAGTTGGCATTATTGAATTTGCTTTACTTCTTTGATTGGGGTTTGCCGG 1714
Query 1459 AGAAGGAAGAGG-CGGACAAGATCATCACCGGCAATGGAGTTGCTGTTGGCCTAGTTCAA 1517
|||||||||| | || ||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 1715 AGAAGGAAGAAGTCG-ACAAGATCATCACCGACAATGAAGTTGCTCTTGGCCTAGTTCAA 1773
Query 1518 GTTCTTCTCCACTGA 1532
|||||||||||||||
Sbjct 1774 GTTCTTCTCCACTGA 1788
Score = 375 bits (203), Expect = 4e-103
Identities = 333/392 (85%), Gaps = 23/392 (6%)
Strand=Plus/Plus
Query 59 AATGGCAATCATCCTCTGTTTCCTCATT-CTCTTACCCCTTATCTTAATCTTCTTGAAAA 117
|||| || || |||||||||||||| || |||||||| |||||||| |||||||||||||
Sbjct 18 AATGTCAGTCTTCCTCTGTTTCCTC-TTCCTCTTACCTCTTATCTTTATCTTCTTGAAAA 76
Query 118 -AACTCAAACATTCGAAATGGAAGCTTCCTCCGGGGCCACCA-AAGCTTCCGTTCATTGG 175
| |||||| |||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 77 GTA-TCAAACCTTCGAAATGGAAGCTTCCTCCGGGGCCA-AAGAAGCTTCCGATCATCGG 134
Query 176 AAACTTACACCAACTCCAAGAACTAC-CTCCCAGGAATC-TC---A----ACC-ACAAGT 225
|||||||||||||| || |||| ||| | |||||||||| || | || | ||||
Sbjct 135 AAACTTACACCAACGCCGAGAATTACAC-CCCAGGAATCGTCGGGATCTTTCCGAAAAGT 193
Query 226 ACGGGCCAGT-GATACTTCTCCGTTTCGGATTCGTCCCCTTGGTCGTGATCTCATCTAAA 284
|||| ||| | | | ||||||| | ||||||||||||| ||||||||||||| || |||
Sbjct 194 ACGGACCAATCG-TGTTTCTCCGATACGGATTCGTCCCCGTGGTCGTGATCTCGTCAAAA 252
Query 285 GAAGCAGCAGAGGAAGTTCTCAAGATTCACGATCTTGAATGTTGTAGCCGACCAGAGACG 344
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 253 GAAGCAGCAGAGGAAGTTCTCAAGATCCACGATCTTGAGTGTTGTAGCCGACCAGAGACG 312
Query 345 GCCGGGACTAGAA-AGATCTCTTACAACTTTAAAGACATCGGATTCGCGCCTTACGGTGA 403
| |||||| ||| | |||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 313 GTCGGGACCAGAGCA-ATCTCTTACAACTTCAAAGATATCGGATTCGCGCCGTACGGTGA 371
Query 404 GGAATGGA-AGGCCATGCGAAAGCTCTCGGTG 434
|| |||| || | ||||| ||||||||||||
Sbjct 372 AGAGTGGAGAG-CGATGCGGAAGCTCTCGGTG 402
> Ahg320488 jgi|Araly1|320488|fgenesh1_pm.C_scaffold_4000545
Length=1515
Score = 994 bits (538), Expect = 0.0
Identities = 1106/1373 (81%), Gaps = 68/1373 (5%)
Strand=Plus/Plus
Query 114 AAAAAACTCAAACATTCGAAATGGAAGCTTCCTCCGGGGCCACCAA-A-GCTTCCGTTCA 171
||||| |||||||| || ||||||||||||||||| || | |||| | |||||| |||
Sbjct 67 AAAAACCTCAAACACTCAAAATGGAAGCTTCCTCC-AGGAC-CCAAGACGCTTCCAATCA 124
Query 172 TTGGAAACTTACACCAA-CTC-CAAGAACTACCTC--CCA-G-----G-AATCTCAACCA 220
| ||||||||||| ||| ||| | || | |||| || | | |||||| |||
Sbjct 125 TCGGAAACTTACA-CAACCTCACTGGATC-GCCTCATGCATGTTTTCGAAATCTCTCCCA 182
Query 221 CAAGTACGGGCCAGTGATACTTCTCCGTTTCGGATTCGTCCCCTTGGTCGTGATCTCATC 280
|| | || |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 183 AAAATTTGGACCAGTGATGCTTCTCCGTTTCGGATTCGTCCCCGTGGTCGTGATCTCATC 242
Query 281 TAAAGAAGCAGCAGAGGAAGTTCTCAAGATTCACGATCTTGAATGTTGTAGCCGACCAGA 340
| ||||| ||||||||||| ||||||| || |||||| ||||||| ||| |||||||
Sbjct 243 GAGAGAAGGAGCAGAGGAAGCCCTCAAGACCCAAGATCTTCAATGTTGCAGCAGACCAGA 302
Query 341 GACGGCCGGGACTAGAAA-GATCTCTTACAACTTTAAAGACATCGGATTCGCGCCTTACG 399
||| | || ||| | ||| ||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 303 GACTGTCGTGAC-AAAAATGATCTCTTACAACTTCAAAGACATCGGGTTCGCCCCTTACG 361
Query 400 GTGAGGAATGGAAGGCCATGCGAAAGCTC-TCGGTGGTCGAACTCTTCACCGCCAAAAAA 458
| ||||||||||| || | | |||||| | ||| ||||| ||||| | | |||||
Sbjct 362 GCGAGGAATGGAAAGCGTTAAGGAAGCTCGT-GGTTGTCGAGCTCTTGAAC-ATGAAAAA 419
Query 459 CA-TCAGTATTTTAGGTCTATCAGAGAGGAAGAGAATGACTTGTTGGTCAAGAAACTAAC 517
| ||||| ||| || | ||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 420 GATTCAGTCTTTCAGATATATAAGAGAGGAAGAGAATGACTTGCTGGTCAAGAAATTAAC 479
Query 518 AGAATTGGCTCTGACACGATCCCCGGTGAATTTGAAGAAGACCCTTTTCACTTTAGTCGG 577
||||| |||| |||||| ||||||||||||| ||||||||||||||||||| | ||||
Sbjct 480 AGAATCGGCTTTGACACAATCCCCGGTGAATCTGAAGAAGACCCTTTTCACGCTCGTCGC 539
Query 578 GAGTATTGTGTGTCGGATCG-GATTCGGGTTTAATCTTCATGAGTGTGAGTTCATCGATG 636
|||||||||||| || ||| | |||||| | ||| | || |||| ||||| ||||||
Sbjct 540 TAGTATTGTGTGTAGGCTCGCG-TTCGGGATAAATATCCACAAGTGCGAGTTTGTCGATG 598
Query 637 A--AAATAGCATCT-CCGACCTTGTTGACAAGTCTGAGATACTTGAGATGACTTCTA-T- 691
| ||| || | | | || || ||| |||||| |||||| | | || | || || |
Sbjct 599 AGGAAA-AG-GT-TGCAGATCTAGTTCACAAGTTTGAGATGC-T-AGGCG-CTGGTATTG 652
Query 692 -GTTCTCTGATTTCTTTCCAGGAGGAATCGG-TAGATTCATCGATTGGATCTCCGGTCAA 749
|||| |||| ||||| || ||| | | || | | || ||||| ||||||||| |
Sbjct 653 CGTTCACTGACTTCTTCCCTGGA-G--TGGGTTGGCTT-ATCGACCAGATCTCCGGACGG 708
Query 750 AACAAG-CGATTCG-ATAATGTTTTCTCGGACCTCGACACTTTCTTTCAAAACATTCTTG 807
|| ||| | ||| | | ||||||||||| |||||||||||||||| | | || | ||||
Sbjct 709 AAGAAGAC-ATT-GAACAATGTTTTCTCAGACCTCGACACTTTCTATGAGAATGTGCTTG 766
Query 808 ATTATCATCTTAAGCCTGGAAGAAAAGTAGCAGATAGCTCTGATATAATCGACGTGGT-G 866
|| ||||||| || |||||||||| |||| |||| ||| ||||| | | |||||| | |
Sbjct 767 ATGATCATCTCAAACCTGGAAGAAGAGTATCAGAGAGCCCTGATGTGGTTGACGTGATGG 826
Query 867 ATCAACATGATAAAGAAGCAAGAGAAAGATGGAGACTCTTTCAAGCTCACAACGGATCAT 926
| | | |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 827 TTGATC-TGATGAAGAAGCAAGAGAAAGATGGAGACTCTTTCAAGCTAACAACAGATCAT 885
Query 927 CTTAAAGGGATGATCTCGGACATATTTCTAGCTGGAGTTAGCACAAGTGCC-TCCACACT 985
|| ||||| || ||||||||||||||||| || ||||| | |||||| | | || || |
Sbjct 886 CTCAAAGGAATCATCTCGGACATATTTCTTGCAGGAGTAAACACAAGCGTCGTC-ACTTT 944
Query 986 GATAT-GGGCGATAACAGAGTT-AGTTAGGAACCGTAAAGTGATGAAGAAAGTGCAAGAA 1043
|| || ||||||| |||||| | | |||| |||| |||||||||||||||||||||||
Sbjct 945 GA-ATTGGGCGATGACAGAGCTGA-TTAGAAACCCAAAAGTGATGAAGAAAGTGCAAGAC 1002
Query 1044 GAGATTAGGACAACACTCGGAGACAAGAAGGAGAGAATCACAGAGCAAGATCTCA-CCAA 1102
|||||| |||||||||| || |||||||| ||||||||||||||||||| || | ||||
Sbjct 1003 GAGATTCGGACAACACTTGGGGACAAGAAACAGAGAATCACAGAGCAAGACCTAAACCAA 1062
Query 1103 TCTCCATTACTTCAAGCTTGTGGTCAAAGAGATATTCAGATTACACCCAGCAGTTCCATT 1162
|| || ||||||||||| |||||||| |||||||| |||||||| ||||||| |||| |
Sbjct 1063 -CTTCACTACTTCAAGCTCGTGGTCAAGGAGATATTTAGATTACATCCAGCAGCTCCACT 1121
Query 1163 TTTGCTACCAAGAGAGACATTATCTCATGTCAAGATTCAAGGCTACGACATTCCCGCCAA 1222
|||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 1122 TTTGCTCCCAAGAGAGACATTGTCTCACGTCAAGATTCAAGGTTACGATATTCCTGC-AA 1180
Query 1223 A-ACCCAGATCATGATCAACGTCTA-TGCGATTGCTCGCGATCCAAAACTTTGG-ACAAA 1279
| || ||||| ||||||||| | || | |||| || || ||||||||||| ||| | |||
Sbjct 1181 AGACACAGATGATGATCAACATTTACT-CGATCGCACGTGATCCAAAACTATGGGA-AAA 1238
Query 1280 CCCAGATGAGTTTAACCCTGACAGGTTCCTAGACAGTTCCATAGATTACAAAGGACTAAA 1339
|||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||| ||
Sbjct 1239 CCCAGATGAGTTCAACCCTGACAGGTTCCTTGACAGCTCCATAGATTACAGAGGACTCAA 1298
Query 1340 TTTTGAACTGTTACCGTTTGGGTCTGGTAGGAGAATCTGTCCAGGAATGACGATGGGAAT 1399
||||| || ||||| ||||| ||||| |||||||||||||||| || |||||||||||
Sbjct 1299 CTTTGAGCTTTTACCATTTGGATCTGGCCGGAGAATCTGTCCAGGGATAACGATGGGAAT 1358
Query 1400 CAC-ACTTGTTGAATTTG--CTTTATTGAATTTGCTTTACTTCTTTGATTGGG 1449
||| || || ||||| | || | || |||||||| || |||||||||||||
Sbjct 1359 CACCACC-GTAGAATTGGGACTGT-TT-AATTTGCTCTATTTCTTTGATTGGG 1408
> Ahg936320 jgi|Araly1|936320|scaffold_500511.1
Length=1547
Score = 580 bits (314), Expect = 7e-165
Identities = 1059/1409 (75%), Gaps = 90/1409 (6%)
Strand=Plus/Plus
Query 103 TAATCTTCTTGAAAAAA-CTCAAACATTCGAAA-TGGAAGCTTCCTCCGGGGCCA-CCAA 159
|||||||| |||||| ||||| | || ||| | ||| |||||||| || ||| | ||
Sbjct 73 TAATCTTCACAAAAAAATCTCAATC-CTCAAAACT-GAAACTTCCTCCAGGTCCATCGAA 130
Query 160 AGCTTCCGTTCATTGGAAACTTACACCAACTCCAA-GAACTACCTCCCAGGAA--TCT-C 215
| |||||| |||| |||||||||||| | || || | | |||||| || || ||| |
Sbjct 131 A-CTTCCGATCATCGGAAACTTACACTACCT-TAACGGATTACCTCACA--AATGTCTCC 186
Query 216 --AA-C---C-ACAA-GTACGGGCCAGTGATACTTCTC-CGTTTCGGATTCGTCCCCTTG 266
|| | | | || |||| |||||||| | ||| | || ||||||||||| |||
Sbjct 187 AAAACCTTTCGAAAACCCACGGACCAGTGATGCAGCTCAAG-TTAGGATTCGTCCCTTTG 245
Query 267 GTCGTGATCTCATCTAAA-GAAGCAGCAGAGGAAGTTCTCAAGATTC-ACGATCTTGAAT 324
||||| ||||| || ||| |||||||||| ||||||||||| | | | || || || |
Sbjct 246 GTCGTAATCTCTTC-AAACCAAGCAGCAGAAGAAGTTCTCAA-AACCAATGACCTAGATT 303
Query 325 GTTGTAGCCGACCAGAGACGGCCGGGAC-TAGAAAGATCTCTTACAACTTTAAAGACATC 383
|||| ||||||||||| || | | | ||| | |||||||||||||| |||||||||
Sbjct 304 GTTGCAGCCGACCAGAAACCATAGCGTCAAAGACA-ATCTCTTACAACTTCAAAGACATC 362
Query 384 GGATTCGCGCCTTACGGTGAGGAATGGAAG-GCCATGCGAAAGCTCTCGGTGGTCGAACT 442
|||||||| || ||||| || |||||| || || || | |||||| | ||| |||| ||
Sbjct 363 GGATTCGCTCCATACGGCGAAGAATGG-AGAGCGTTGAGGAAGCTCGCTGTGATCGAGCT 421
Query 443 CTTCACCGCCAAAAAACATC-AGTATTTTAGGTCTATCAGAGAGGAAGAGAATGACTTGT 501
|||| | |||||| || | | |||||||| ||| ||||| ||||||||||||||||
Sbjct 422 ATTCAGCTTGAAAAAA-TTCAACTCTTTTAGGTATATTAGAGAAGAAGAGAATGACTTGT 480
Query 502 TGGTCAAGAAACTAACAGAA--TTGGCTCTGACACGATCCCCGGTGAATTTGAAG-AAGA 558
||||||||||||| | ||| || | | || || ||| || ||| |||| ||| |||
Sbjct 481 TGGTCAAGAAACTCTCTGAAGCTT--CACAGAAACAATCTCCTGTGGATTTAAAGAAAG- 537
Query 559 CCCTTTTCACTTTAGTCGGGAGTATTGTGTGTCGGA-TCG-GATTCGGGT-TTAATCTTC 615
|||||||||||||||||| ||||| |||||| || ||| | ||| ||| |||||||
Sbjct 538 CCCTTTTCACTTTAGTCGCTAGTATCGTGTGT-AGACTCGCG-TTC-GGTCAAAATCTTC 594
Query 616 ATGAGTGTGAGTTCATCGATGAAAATAGCATCTCCGACCTT-GTTGAC-AAGTCTGAG-A 672
| || | ||||| ||||||||| |||| || || || | | | | ||| ||| |
Sbjct 595 ACGAATCCGAGTTTATCGATGAAGATAGTATGGAGGA-TTTAG-CGTCTAGGTCAGAGAA 652
Query 673 TACTTGAGATG-ACTTCTATGTTCTCTGATTTCTTTCCAGGAGGAATCGGTAGATTCATC 731
| || || | | ||| | |||||| ||||||| || ||||| | | ||||| |
Sbjct 653 GA-TTCAGGCGAAATTCGCT-TTCTCTAATTTCTTCCCCGGAGG--T---TGGATTC-TT 704
Query 732 GATTGGATCTCCGGTCAAAACAAGCG-ATT--CGATAATGTTTTCTCGGACCTCGACACT 788
||| ||| ||||||||| |||| | || ||| || ||||| | || ||||||
Sbjct 705 GATAAAATCACCGGTCAAAGCAAGAGTCTTAACGA-AA--TTTTCGCAGATCTCGACGGA 761
Query 789 TTCTTTCAAAAC-A-TTCTTGATTATCATCTTAAGCCTGGAAGAAAAGTAGCAGATAGCT 846
|||||| || | | | || ||| ||||||| ||||| ||||||| |||| ||| | ||
Sbjct 762 TTCTTT--AACCAAGTGCTCGATGATCATCTAAAGCCAGGAAGAAGAGTATTAGAGA-CT 818
Query 847 -CTGATATAATCGACGTGGTGATCAACATGATAAAGAAGCAAGAG-AAAGATGGAGACTC 904
| ||| | | || ||| |||| | ||||| || || ||| || ||||| | | ||
Sbjct 819 CCAGATGTTGTGGATGTGATGATTGATATGATGAATAAACAA-AGCCAAGAT-G-G-TTC 874
Query 905 TTTCAAGCTCACAACGGATCATCTTAAAGGGATGATCTCGGACATATTTCTAGCTGGAGT 964
||| |||||||| || |||||| | ||||| || ||||| || |||||||| || |||||
Sbjct 875 TTTTAAGCTCACTACTGATCATATCAAAGGAATCATCTCTGATATATTTCTTGCCGGAGT 934
Query 965 TAGCACAAGTGCCTCCA-CACTGATATGGGCGATAACAGAGTTAGTTAGGAACCGTAA-A 1022
| ||||||||| | | || | | ||||| || ||||||||| | || |||| || |
Sbjct 935 AAACACAAGTGCAACGACCA-TTCTTTGGGCAATGACAGAGTTAATAAGAAACC-CAAGA 992
Query 1023 GTGATGAAGAAAGTGCAAGAAGAGATTAGGACAACACTCGGAGACAAGAAG-GAGAGAAT 1081
|||||||||||||| ||||| ||| |||||||| ||| || || || ||| ||||||||
Sbjct 993 GTGATGAAGAAAGTACAAGATGAGGTTAGGACAGTACTTGGTGA-AAAAAGAGAGAGAAT 1051
Query 1082 CACAGAGCAAGATC-TCACCAATCTCCATTACTTCAAGCTTGTGGTCAAAGAGATATTCA 1140
|||||| ||||||| | ||||| || | ||||||||||| ||| ||||||||| |||||
Sbjct 1052 CACAGAACAAGATCTTAACCAA-CTTAACTACTTCAAGCTAGTGATCAAAGAGACATTCA 1110
Query 1141 GATTACACCCAGCAGTTCCATTTTTGCTACCAAGAGAGACATTATCTCATGTCAAGATTC 1200
||||||||||||||| |||| |||| ||||||||||| || | || | ||||||| |
Sbjct 1111 GATTACACCCAGCAGCTCCACTTTTATTACCAAGAGAGGCAATGGCTAAAATCAAGATCC 1170
Query 1201 AAGGCTACGACATTCCCGCCAAAACCCAGATCATGATCAACGTCTATGCGATTGCTCGCG 1260
||||||| |||||||| | ||||| ||||||||| |||| || || ||||| | ||||
Sbjct 1171 AAGGCTATGACATTCCAGAAAAAACTCAGATCATGGTCAATGTTTACGCGATAGGACGCG 1230
Query 1261 ATCCAAAACTTT-GGACAAACCCAGATGAGTTTAACCCTGACAGGTTCCTAGACAGTTCC 1319
|||| || |||| ||| || ||||| |||||||| || || || || | || |||||
Sbjct 1231 ATCCTAACCTTTGGGA-GAATCCAGAAGAGTTTAAACCGGAAAGATTTGTTGATAGTTCT 1289
Query 1320 ATAGATTACAAAGGACTAAATTTTGAACTGTTACCGTTTGGGTCTGGTAGGAGAATCTGT 1379
| ||||||| |||||| || || || || || |||||||| |||||| | || || |||
Sbjct 1290 GTTGATTACAGAGGACTTAACTTCGAGCTTTTGCCGTTTGGTTCTGGTCGAAGGATTTGT 1349
Query 1380 CCAGGAATGACGATGGGAATCAC-ACTTGTTGAATTTGCTTTATTGAATTTGCTTTACTT 1438
|| || ||||| ||||||||| | || || ||||| | || |||||||||||||||||
Sbjct 1350 CCCGGTATGACTATGGGAATCGCGAC-AGTCGAATTAGGATTGTTGAATTTGCTTTACTT 1408
Query 1439 CTTTGATTGGGGTTTGCCGGA-G-AAGGA 1465
|||||||||||| ||||| || | |||||
Sbjct 1409 CTTTGATTGGGGATTGCCTGAAGGAAGGA 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5