BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13140.1 Length=1835 Score E Sequences producing significant alignments: (Bits) Value Ahg471467 jgi|Araly1|471467|fgenesh2_kg.1__1421__AT1G13140.1 2420 0.0 Ahg471468 jgi|Araly1|471468|fgenesh2_kg.1__1422__AT1G13150.1 1609 0.0 > Ahg471467 jgi|Araly1|471467|fgenesh2_kg.1__1421__AT1G13140.1 Length=1686 Score = 2420 bits (1310), Expect = 0.0 Identities = 1500/1594 (94%), Gaps = 4/1594 (0%) Strand=Plus/Plus Query 76 ATGCCTTTAACAGAGAGAGTTTATAATCATCTTTGTCTGTCCGATGTTTCTCTGGCCTTG 135 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGTCTTTAACAGAGAGAGTTTATAATCATCTTTGTCTTTCCGATGTTTCTCTGGCCTTG 60 Query 136 TTGGGACTGTTTGTTTTCTGTTGTGTGCGTGAGAAGGTTACTAAAAAGCTGGGGCCAACG 195 |||||||| |||||||||||||| |||||||||||||| || ||||||| |||||||||| Sbjct 61 TTGGGACTCTTTGTTTTCTGTTGCGTGCGTGAGAAGGTAACCAAAAAGCAGGGGCCAACG 120 Query 196 ATATGGCCTGTGTTCGGAATTACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTATGGT 255 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATATGGCCTGTGTTCGGAATAACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTATGGT 180 Query 256 TGGGCT-ACAAGATGTTTGAAAAAATGTCGAGGTACCTTTCTCTATAACGGAATCTGGCT 314 |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 181 TGGG-TCACAAGATGTTTGAAAAAATGTCGAGGTACTTTTCTCTATAACGGAATCTGGCT 239 Query 315 TGGTGGGTCGTATGGAGCTGTGACTTGTGTCCCTGCGAACGTTGAATACATGCTCAAGAC 374 ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 TGGTGGGTCTTCTGGAGCTGTGACTTGTGTCCCTGCGAACGTCGAATACATGCTCAAGAC 299 Query 375 TAACTTCAAGAACTTCCCAAAAGGTGCGTTTTTCAAAGAACGGTTCAATGATCTGCTCGA 434 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || Sbjct 300 TAACTTCAAGAACTTCCCAAAAGGTGCCTTTTTCAAAGAACGGTTTGATGATCTGCTTGA 359 Query 435 GGATGGTATCTTCAATGCTGATGCTGAGTCTTGGAAGGAGCAACGACGGATCATCATTAC 494 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 360 GGATGGTATCTTTAATGCTGATGCTGAGTCTTGGAAGGAGCAGCGACGGATCATCATAAC 419 Query 495 CGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACAACACAAGATTTGGTAAG 554 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 CGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACTACACAAGATTTGGTAAG 479 Query 555 GAAGAAGCTGTTAAAGGTGATGGAGAGTTTCGCAAGATCACAAGAGGCTTTTGACCTTCA 614 |||||||||||||||||||||||||| ||| ||||| || |||||||| || ||||| || Sbjct 480 GAAGAAGCTGTTAAAGGTGATGGAGAATTTTGCAAGTTCTCAAGAGGCATTCGACCTCCA 539 Query 615 AGATGTGCTCTTGCGTTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTGATGATCC 674 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 540 AGATGTGCTCTTGCGCTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTGATGACCC 599 Query 675 AGGAACTCTGGATTCTGATCTCCCCCTTGTTCCATTCGCTCAAGCTTTTGAAGAAGCAAC 734 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 600 GGGAACTCTGGATTCTGATCTTCCCCTTGTTCCATTTGCTCAAGCTTTTGAAGAAGCAAC 659 Query 735 GGAATCTACTATGTTTAGATTCATGATTCCTCCTTTCATATGGAAACCCCTGAAGTTCTT 794 ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 660 GGAATCTACGCTGTTTAGATTCATGATTCCTCCTTTTATATGGAAACCCTTGAAGTTCTT 719 Query 795 CGACATCGGGTATGAGAAAGGTCTCAGGAAAGCTGTTGATGTCGTCCATGAGTTTGTCGA 854 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 720 CGACATCGGGTATGAGAAAAGTCTCAGGAAAGCTGTTGAGGTCGTCCATGAGTTTGTCGA 779 Query 855 CAAGATGGTTGTGGATCGTATCTGCAAGCTCAAAGAAGAAGGAACGTTAGGCAACAGATC 914 ||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct 780 CAAGATGGTTGTGGATCGTATTTGCAAACTCAAAGAGGAAGGAACGTTAGGAAACAGATC 839 Query 915 CGATGTCCTCTCAAGGATTATTGAGATAGAAAGTCACAAGACGACTGATGAAAAAGATCC 974 |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 840 CGATGTCCTCTCGCGGATTATTGAGATAGAAAATCACAAGAAGACTGATGAAAAAGATCC 899 Query 975 TTCTACCATCAAATTCTTTAGACAATTCTGCACAAGTTTCATCTTAGCTGGACGAGACAC 1034 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TTCCACCATCAAATTCTTTAGACAATTCTGCACAAGTTTCATCTTAGCTGGACGAGACAC 959 Query 1035 AAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCCAGAAGTCGAAAA 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 AAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCCAGAAGTCGAAAA 1019 Query 1095 CAAAATCATCCGTGAGATAAGTGAAATCTTAAGACAGCGAGGGGATTCTCCAACCAGCAA 1154 |||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1020 CAAAATCATCTGCGAGATAAAAGAAATCTTGAGACAGCGAGGGGATTCTCCAACCAGCAA 1079 Query 1155 AAACGAGAGTCTCTTCACGGTCAAAGAACTAAACGACATGGTATATCTACAAGCAGCACT 1214 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1080 CAATGAGAGTCTCTTCACGGTCAAAGAACTAAACGACATGGTATACCTACAAGCAGCACT 1139 Query 1215 TTCAGAAACAATGAGACTTTACCCTCCAATACCAATGGAAATGAAACAAGCCATCGAAGA 1274 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1140 TTCAGAAACCATGAGACTATACCCTCCAATACCAATGGAAATGAAACAAGCCATTGAAGA 1199 Query 1275 CGATGTGTTTCCCGATGGGACATTCATACGTAAAGGCTCACGGGTTTACTTTGCGACTTA 1334 |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1200 CGATGTTTTTCCCGATGGGACTTTCATACGTAAAGGTTCACGGGTTTACTTTGCGACTTA 1259 Query 1335 CGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAATCATTCAAACCAGAGAG 1394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 CGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAATCATTCAAACCAGAGAG 1319 Query 1395 ATGGATCCAATCAGGGAATTTCGTGAATGATGACCAATTTAAATACGTTGTGTTCAATGC 1454 |||||||||| |||||||||||||||| || || ||||| |||||||||||||| ||||| Sbjct 1320 ATGGATCCAAGCAGGGAATTTCGTGAACGAGGAACAATTCAAATACGTTGTGTTTAATGC 1379 Query 1455 TGGACCAAGGCTGTGTTTAGGGAAAACATTTGCTTACCTACAGATGAAGACAATCGCTGC 1514 ||| ||||||||||||||||| |||||||||||||| || |||||||||||| ||||||| Sbjct 1380 TGGGCCAAGGCTGTGTTTAGGAAAAACATTTGCTTATCTGCAGATGAAGACAGTCGCTGC 1439 Query 1515 TTCAGTCCTGTCT-AGGTACTCAATAAAGGTTGCTAAAGATCATGTAGTTGTCCCCAGAG 1573 ||||||| ||| | |||||||| || |||||||||||||||||| | || |||||||||| Sbjct 1440 TTCAGTCTTGT-TGAGGTACTCTATCAAGGTTGCTAAAGATCATATCGTAGTCCCCAGAG 1498 Query 1574 TAACTACAACCTTGTACATGAGGCACGGTCTCAAGGTAACCATCTCGTCAAAGTCCCTTG 1633 | || ||||| |||||||||| |||||||||||||||||||||||| |||||||||| | Sbjct 1499 TTACGACAACTTTGTACATGAAGCACGGTCTCAAGGTAACCATCTCACCAAAGTCCCTGG 1558 Query 1634 AAGAGAAGATACACGTTCAAGACTAGTGAATCAA 1667 |||| ||| |||| |||||||| ||| ||||||| Sbjct 1559 AAGATAAGGTACATGTTCAAGATTAGAGAATCAA 1592 > Ahg471468 jgi|Araly1|471468|fgenesh2_kg.1__1422__AT1G13150.1 Length=1824 Score = 1609 bits (871), Expect = 0.0 Identities = 1358/1590 (85%), Gaps = 46/1590 (3%) Strand=Plus/Plus Query 76 ATGCCTTTAACAGAGAGAGTTTATAATCATCTTTGTCTGTCCGATGT-TTCTCTGGCCTT 134 ||| ||||||||||| || ||||||||||||||| ||| | |||| | || ||| ||||| Sbjct 114 ATGTCTTTAACAGAGCGACTTTATAATCATCTTTCTCTCTTCGATCTATT-TCTTGCCTT 172 Query 135 GTTGGGACTGTTTGTTTTCTGTTG-TGTGCGTGAGAAGGTT-ACTAAAAAGCTG-GGGCC 191 |||||| || ||||||||||| || | |||||||||| ||| || || |||| | ||||| Sbjct 173 GTTGGGGCTCTTTGTTTTCTGCTGCT-TGCGTGAGAA-GTTAACCAACAAGC-GTGGGCC 229 Query 192 AACGATATGGCCTGTGTTCGGAATTACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTA 251 || | ||||||| ||||| ||||||||| |||||| |||||||| | ||||||||| || Sbjct 230 AATGCTATGGCCAGTGTTTGGAATTACTTTAGAGTTTTTCTTTCATACGAATGATGTCTA 289 Query 252 TGGTTGGGCT-ACAA-GATGTTTGAAAAAATGTCGAGGTACCTTTCTCTATAACGGAATC 309 ||| |||| | |||| || |||||||||||||||||||||| ||||| ||| |||| | Sbjct 290 TGGATGGG-TCACAAGGA-GTTTGAAAAAATGTCGAGGTACGTTTCTTTATCGCGGAGTT 347 Query 310 TGGCTTGGTGGGTCGTATGGAGCTGTGACTTGTGTCCCTGCGAACGTTGAATACATGCTC 369 ||||||| |||||| |||||||||||||||||||| ||||| || || || || |||||| Sbjct 348 TGGCTTGATGGGTCTTATGGAGCTGTGACTTGTGTTCCTGCAAATGTCGAGTATATGCTC 407 Query 370 AAGACTAACTTCAAGAACTTCCCAAAAGGTGCGTT-TTTCAAAGAACGGTTCAATGATCT 428 || |||||||||||||||||||| || ||| | || ||| |||| |||||||||||||| Sbjct 408 AAAACTAACTTCAAGAACTTCCCCAAGGGTACCTTCTTTAAAAG-CCGGTTCAATGATCT 466 Query 429 GCTCGAGGATGGTATCTTCAATGCTGATGCTGAGTCTTGGAAGGAGCAACGACGGATCAT 488 ||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| Sbjct 467 TCTCGAGGATGGTATCTTTAATGCTGATGATGAGTCTTGGAAGGAGCAGCGACGGATCAT 526 Query 489 CATTACCGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACAACACAAGATTT 548 ||| |||||||||||||||||| |||| || |||||||||||||||||||||||| |||| Sbjct 527 CATAACCGAAATGCATTCAACCGGGTTTGTAGAGCATTCCTTTCAGACAACACAACATTT 586 Query 549 GGTAAGGAAGAAGCTGTTAAAGGTGATGGAGAGTTTCGCAA-GATCACAAGAGGCTTTTG 607 ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| | Sbjct 587 GGTAAGGAAGAAGCTGTTAAAGGTGATGGAGAGTTTCGCAAAG-TCACAAGAAGCTTTCG 645 Query 608 ACCTTCAAGATGTGCTCTTGCGTTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTG 667 | || ||||| ||| || |||| ||||| ||||||| |||||||||||| |||||||||| Sbjct 646 ATCTCCAAGACGTGTTCCTGCGCTTGACGTTTGACATCATCTGCATCGCGGGTCTAGGTG 705 Query 668 ATGATCCAGGAACTCTGGATTCTGATCTCCCCCTTGTTCCATTCGCTCAAGCTTTTGAAG 727 ||| |||| ||| || | | ||||||| |||| |||||||| ||| |||||||||||| Sbjct 706 CTGACCCAGAAACACTAGCTGCTGATCTTCCCCAAGTTCCATTTGCTAAAGCTTTTGAAG 765 Query 728 AAGCAACGGAATCTACTA-TGTTTAGATTCATGATTCCTCC-TTTCATATGGAAACCCCT 785 ||||||| || ||||| | |||||||||||||||| ||||| ||| ||||||||||| | Sbjct 766 AAGCAACAGAGTCTAC-ACTGTTTAGATTCATGATCCCTCCATTT-ATATGGAAACCTAT 823 Query 786 GAAGTT-CTTCGACATCGGGTATGAGAAAGGTCTCAGGAAAGCTGTTGATGTCGTCCATG 844 || ||| || |||||| |||||||| |||||||||||||||||||||| || || |||| Sbjct 824 GAGGTTTCT-CGACATAGGGTATGAAAAAGGTCTCAGGAAAGCTGTTGGGGTTGTTCATG 882 Query 845 AGTTTGTCGACAAGATGGTTGTGGATCGTATCTGCAAGCTCAAAGAAGAAGGAACGTTAG 904 ||| ||| |||||||| ||||||||||||||||| |||||||||| |||| ||| |||| Sbjct 883 GGTTCGTCAACAAGATGATTGTGGATCGTATCTGCGAGCTCAAAGAGGAAGAAACATTAG 942 Query 905 GCAACAG-ATCCGATGTCCTCTCAAGGATTATTGAGATAGAAAGTCACAAGACG-ACTGA 962 || || | | ||||||||||||||||||||| ||||||| ||||| || | | || | Sbjct 943 ATAATAGGA-CAGATGTCCTCTCAAGGATTATTCAGATAGAGAGTCATAAAAAGGACA-A 1000 Query 963 TGAAAAAGATCCTTCTACCATCAAATTCTTTAGACAATTCTGCACAAGTTTCATCTTAGC 1022 ||| | |||||||| ||||||| ||| ||||||||||| ||||||||||| || ||||| Sbjct 1001 TGAGATTGATCCTTCCACCATCAGATTTTTTAGACAATTTTGCACAAGTTTTATTTTAGC 1060 Query 1023 TGGACGAGACACAAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCC 1082 ||| ||||| |||||||| ||||||||| ||||||||| |||||||||||||||||| || Sbjct 1061 TGGGCGAGATACAAGTTCTGTTGCACTTTCATGGTTCTGCTGGGTGATACAGAAACACCC 1120 Query 1083 AGAAGTCGAAAACAAAATCATCCGTGAGATAAGTGAAATCTTAAGACAGCGAGGGGATTC 1142 ||| || ||||||||||||||| | || ||||| |||||||| ||||||||||||||||| Sbjct 1121 AGACGTTGAAAACAAAATCATCTGCGAAATAAGAGAAATCTTGAGACAGCGAGGGGATTC 1180 Query 1143 TCCAACCAGCAAAAACGAGAGTC-TCTTCACGGTCAAAGAACTAAACGACATGGTATATC 1201 ||||||||||||| ||||||| | |||||||||||| |||||||||| |||||||||||| Sbjct 1181 TCCAACCAGCAAAGACGAGAG-CATCTTCACGGTCAGAGAACTAAACAACATGGTATATC 1239 Query 1202 TACAAGCAGCACTTTCAGAAACAATGAGACTTTACCCTCCAATACCAATGGAAATGAAAC 1261 ||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||| Sbjct 1240 TACAAGCAGCACTATCAGAAACTCTGAGACTTTTTCCTCCAATTCCAATGGAAATGAAAC 1299 Query 1262 AAGCCA-TCGAAGACGATGTGTTTCCCGATGGGACATTCATACGTAAAGGCTCACGGGTT 1320 |||||| | ||||| |||||||| || ||||||||||||||| | ||||| ||||||||| Sbjct 1300 AAGCCACT-GAAGATGATGTGTTACCAGATGGGACATTCATAAGAAAAGGTTCACGGGTT 1358 Query 1321 TACTT-TGCGA-CTTACGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAA- 1377 ||||| | | | || | |||||||||||||||||| | || ||||||||||| |||||| Sbjct 1359 TACTTCT-CAATCT-ATGCCATGGGAAGGATGGAAGCAATCTGGGGAAAAGATTGTGAAG 1416 Query 1378 TCATTCAAACCAGAGAGATGGATCCAATCAGGGAA-TTTCGTGAATGATGACCAATTTAA 1436 | |||| ||||||||||||||||||| ||||||| ||| || | ||| ||||| || || Sbjct 1417 TT-TTCAGACCAGAGAGATGGATCCAAGCAGGGAAGTTT-GTCAGTGACGACCAGTTCAA 1474 Query 1437 ATACGTTGTGTTCAATGCTGGACCAAGGCTGTGTTTAGGGAAAACATTTGCTTACCTACA 1496 ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||| || Sbjct 1475 ATACGTTGTATTCAATGCTGGGCCAAGGCTGTGCATAGGAAAAACATTTGCTTACCTGCA 1534 Query 1497 GATGAAGACAATCGCTGCTTCAGTCCTGTCT-AGGTACTCAATAAAGGTTGCTAAAGATC 1555 |||||||| || ||||||||||| ||| | ||||||||||| |||||||| |||||| Sbjct 1535 GATGAAGATGATAGCTGCTTCAGTTTTGT-TGAGGTACTCAATCAAGGTTGCCCAAGATC 1593 Query 1556 ATGT-AGTTGTCCCCAGAGTAACTAC-AACCTTGTACATGAGGCACGGTCTCAAGGTAAC 1613 | || | ||||||| ||||| || || ||| |||||||||| | |||| ||||| || || Sbjct 1594 ACGTCA-TTGTCCCGAGAGTCACGACTAAC-TTGTACATGAAGTACGGCCTCAAAGTGAC 1651 Query 1614 CATCTCGTCAA-AGTCCCTTGAAGAGAAGA 1642 |||| | ||| | || || |||||||||| Sbjct 1652 CATCACACCAAGA-TCGCTGGAAGAGAAGA 1680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68905253205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5