BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13140.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471467 jgi|Araly1|471467|fgenesh2_kg.1__1421__AT1G13140.1 2420 0.0
Ahg471468 jgi|Araly1|471468|fgenesh2_kg.1__1422__AT1G13150.1 1609 0.0
> Ahg471467 jgi|Araly1|471467|fgenesh2_kg.1__1421__AT1G13140.1
Length=1686
Score = 2420 bits (1310), Expect = 0.0
Identities = 1500/1594 (94%), Gaps = 4/1594 (0%)
Strand=Plus/Plus
Query 76 ATGCCTTTAACAGAGAGAGTTTATAATCATCTTTGTCTGTCCGATGTTTCTCTGGCCTTG 135
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTTTAACAGAGAGAGTTTATAATCATCTTTGTCTTTCCGATGTTTCTCTGGCCTTG 60
Query 136 TTGGGACTGTTTGTTTTCTGTTGTGTGCGTGAGAAGGTTACTAAAAAGCTGGGGCCAACG 195
|||||||| |||||||||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct 61 TTGGGACTCTTTGTTTTCTGTTGCGTGCGTGAGAAGGTAACCAAAAAGCAGGGGCCAACG 120
Query 196 ATATGGCCTGTGTTCGGAATTACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTATGGT 255
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATATGGCCTGTGTTCGGAATAACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTATGGT 180
Query 256 TGGGCT-ACAAGATGTTTGAAAAAATGTCGAGGTACCTTTCTCTATAACGGAATCTGGCT 314
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TGGG-TCACAAGATGTTTGAAAAAATGTCGAGGTACTTTTCTCTATAACGGAATCTGGCT 239
Query 315 TGGTGGGTCGTATGGAGCTGTGACTTGTGTCCCTGCGAACGTTGAATACATGCTCAAGAC 374
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TGGTGGGTCTTCTGGAGCTGTGACTTGTGTCCCTGCGAACGTCGAATACATGCTCAAGAC 299
Query 375 TAACTTCAAGAACTTCCCAAAAGGTGCGTTTTTCAAAGAACGGTTCAATGATCTGCTCGA 434
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||
Sbjct 300 TAACTTCAAGAACTTCCCAAAAGGTGCCTTTTTCAAAGAACGGTTTGATGATCTGCTTGA 359
Query 435 GGATGGTATCTTCAATGCTGATGCTGAGTCTTGGAAGGAGCAACGACGGATCATCATTAC 494
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 360 GGATGGTATCTTTAATGCTGATGCTGAGTCTTGGAAGGAGCAGCGACGGATCATCATAAC 419
Query 495 CGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACAACACAAGATTTGGTAAG 554
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACTACACAAGATTTGGTAAG 479
Query 555 GAAGAAGCTGTTAAAGGTGATGGAGAGTTTCGCAAGATCACAAGAGGCTTTTGACCTTCA 614
|||||||||||||||||||||||||| ||| ||||| || |||||||| || ||||| ||
Sbjct 480 GAAGAAGCTGTTAAAGGTGATGGAGAATTTTGCAAGTTCTCAAGAGGCATTCGACCTCCA 539
Query 615 AGATGTGCTCTTGCGTTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTGATGATCC 674
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 AGATGTGCTCTTGCGCTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTGATGACCC 599
Query 675 AGGAACTCTGGATTCTGATCTCCCCCTTGTTCCATTCGCTCAAGCTTTTGAAGAAGCAAC 734
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 600 GGGAACTCTGGATTCTGATCTTCCCCTTGTTCCATTTGCTCAAGCTTTTGAAGAAGCAAC 659
Query 735 GGAATCTACTATGTTTAGATTCATGATTCCTCCTTTCATATGGAAACCCCTGAAGTTCTT 794
||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 660 GGAATCTACGCTGTTTAGATTCATGATTCCTCCTTTTATATGGAAACCCTTGAAGTTCTT 719
Query 795 CGACATCGGGTATGAGAAAGGTCTCAGGAAAGCTGTTGATGTCGTCCATGAGTTTGTCGA 854
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 CGACATCGGGTATGAGAAAAGTCTCAGGAAAGCTGTTGAGGTCGTCCATGAGTTTGTCGA 779
Query 855 CAAGATGGTTGTGGATCGTATCTGCAAGCTCAAAGAAGAAGGAACGTTAGGCAACAGATC 914
||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 780 CAAGATGGTTGTGGATCGTATTTGCAAACTCAAAGAGGAAGGAACGTTAGGAAACAGATC 839
Query 915 CGATGTCCTCTCAAGGATTATTGAGATAGAAAGTCACAAGACGACTGATGAAAAAGATCC 974
|||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 840 CGATGTCCTCTCGCGGATTATTGAGATAGAAAATCACAAGAAGACTGATGAAAAAGATCC 899
Query 975 TTCTACCATCAAATTCTTTAGACAATTCTGCACAAGTTTCATCTTAGCTGGACGAGACAC 1034
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCCACCATCAAATTCTTTAGACAATTCTGCACAAGTTTCATCTTAGCTGGACGAGACAC 959
Query 1035 AAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCCAGAAGTCGAAAA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCCAGAAGTCGAAAA 1019
Query 1095 CAAAATCATCCGTGAGATAAGTGAAATCTTAAGACAGCGAGGGGATTCTCCAACCAGCAA 1154
|||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1020 CAAAATCATCTGCGAGATAAAAGAAATCTTGAGACAGCGAGGGGATTCTCCAACCAGCAA 1079
Query 1155 AAACGAGAGTCTCTTCACGGTCAAAGAACTAAACGACATGGTATATCTACAAGCAGCACT 1214
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 CAATGAGAGTCTCTTCACGGTCAAAGAACTAAACGACATGGTATACCTACAAGCAGCACT 1139
Query 1215 TTCAGAAACAATGAGACTTTACCCTCCAATACCAATGGAAATGAAACAAGCCATCGAAGA 1274
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TTCAGAAACCATGAGACTATACCCTCCAATACCAATGGAAATGAAACAAGCCATTGAAGA 1199
Query 1275 CGATGTGTTTCCCGATGGGACATTCATACGTAAAGGCTCACGGGTTTACTTTGCGACTTA 1334
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1200 CGATGTTTTTCCCGATGGGACTTTCATACGTAAAGGTTCACGGGTTTACTTTGCGACTTA 1259
Query 1335 CGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAATCATTCAAACCAGAGAG 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAATCATTCAAACCAGAGAG 1319
Query 1395 ATGGATCCAATCAGGGAATTTCGTGAATGATGACCAATTTAAATACGTTGTGTTCAATGC 1454
|||||||||| |||||||||||||||| || || ||||| |||||||||||||| |||||
Sbjct 1320 ATGGATCCAAGCAGGGAATTTCGTGAACGAGGAACAATTCAAATACGTTGTGTTTAATGC 1379
Query 1455 TGGACCAAGGCTGTGTTTAGGGAAAACATTTGCTTACCTACAGATGAAGACAATCGCTGC 1514
||| ||||||||||||||||| |||||||||||||| || |||||||||||| |||||||
Sbjct 1380 TGGGCCAAGGCTGTGTTTAGGAAAAACATTTGCTTATCTGCAGATGAAGACAGTCGCTGC 1439
Query 1515 TTCAGTCCTGTCT-AGGTACTCAATAAAGGTTGCTAAAGATCATGTAGTTGTCCCCAGAG 1573
||||||| ||| | |||||||| || |||||||||||||||||| | || ||||||||||
Sbjct 1440 TTCAGTCTTGT-TGAGGTACTCTATCAAGGTTGCTAAAGATCATATCGTAGTCCCCAGAG 1498
Query 1574 TAACTACAACCTTGTACATGAGGCACGGTCTCAAGGTAACCATCTCGTCAAAGTCCCTTG 1633
| || ||||| |||||||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 1499 TTACGACAACTTTGTACATGAAGCACGGTCTCAAGGTAACCATCTCACCAAAGTCCCTGG 1558
Query 1634 AAGAGAAGATACACGTTCAAGACTAGTGAATCAA 1667
|||| ||| |||| |||||||| ||| |||||||
Sbjct 1559 AAGATAAGGTACATGTTCAAGATTAGAGAATCAA 1592
> Ahg471468 jgi|Araly1|471468|fgenesh2_kg.1__1422__AT1G13150.1
Length=1824
Score = 1609 bits (871), Expect = 0.0
Identities = 1358/1590 (85%), Gaps = 46/1590 (3%)
Strand=Plus/Plus
Query 76 ATGCCTTTAACAGAGAGAGTTTATAATCATCTTTGTCTGTCCGATGT-TTCTCTGGCCTT 134
||| ||||||||||| || ||||||||||||||| ||| | |||| | || ||| |||||
Sbjct 114 ATGTCTTTAACAGAGCGACTTTATAATCATCTTTCTCTCTTCGATCTATT-TCTTGCCTT 172
Query 135 GTTGGGACTGTTTGTTTTCTGTTG-TGTGCGTGAGAAGGTT-ACTAAAAAGCTG-GGGCC 191
|||||| || ||||||||||| || | |||||||||| ||| || || |||| | |||||
Sbjct 173 GTTGGGGCTCTTTGTTTTCTGCTGCT-TGCGTGAGAA-GTTAACCAACAAGC-GTGGGCC 229
Query 192 AACGATATGGCCTGTGTTCGGAATTACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTA 251
|| | ||||||| ||||| ||||||||| |||||| |||||||| | ||||||||| ||
Sbjct 230 AATGCTATGGCCAGTGTTTGGAATTACTTTAGAGTTTTTCTTTCATACGAATGATGTCTA 289
Query 252 TGGTTGGGCT-ACAA-GATGTTTGAAAAAATGTCGAGGTACCTTTCTCTATAACGGAATC 309
||| |||| | |||| || |||||||||||||||||||||| ||||| ||| |||| |
Sbjct 290 TGGATGGG-TCACAAGGA-GTTTGAAAAAATGTCGAGGTACGTTTCTTTATCGCGGAGTT 347
Query 310 TGGCTTGGTGGGTCGTATGGAGCTGTGACTTGTGTCCCTGCGAACGTTGAATACATGCTC 369
||||||| |||||| |||||||||||||||||||| ||||| || || || || ||||||
Sbjct 348 TGGCTTGATGGGTCTTATGGAGCTGTGACTTGTGTTCCTGCAAATGTCGAGTATATGCTC 407
Query 370 AAGACTAACTTCAAGAACTTCCCAAAAGGTGCGTT-TTTCAAAGAACGGTTCAATGATCT 428
|| |||||||||||||||||||| || ||| | || ||| |||| ||||||||||||||
Sbjct 408 AAAACTAACTTCAAGAACTTCCCCAAGGGTACCTTCTTTAAAAG-CCGGTTCAATGATCT 466
Query 429 GCTCGAGGATGGTATCTTCAATGCTGATGCTGAGTCTTGGAAGGAGCAACGACGGATCAT 488
||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct 467 TCTCGAGGATGGTATCTTTAATGCTGATGATGAGTCTTGGAAGGAGCAGCGACGGATCAT 526
Query 489 CATTACCGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACAACACAAGATTT 548
||| |||||||||||||||||| |||| || |||||||||||||||||||||||| ||||
Sbjct 527 CATAACCGAAATGCATTCAACCGGGTTTGTAGAGCATTCCTTTCAGACAACACAACATTT 586
Query 549 GGTAAGGAAGAAGCTGTTAAAGGTGATGGAGAGTTTCGCAA-GATCACAAGAGGCTTTTG 607
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
Sbjct 587 GGTAAGGAAGAAGCTGTTAAAGGTGATGGAGAGTTTCGCAAAG-TCACAAGAAGCTTTCG 645
Query 608 ACCTTCAAGATGTGCTCTTGCGTTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTG 667
| || ||||| ||| || |||| ||||| ||||||| |||||||||||| ||||||||||
Sbjct 646 ATCTCCAAGACGTGTTCCTGCGCTTGACGTTTGACATCATCTGCATCGCGGGTCTAGGTG 705
Query 668 ATGATCCAGGAACTCTGGATTCTGATCTCCCCCTTGTTCCATTCGCTCAAGCTTTTGAAG 727
||| |||| ||| || | | ||||||| |||| |||||||| ||| ||||||||||||
Sbjct 706 CTGACCCAGAAACACTAGCTGCTGATCTTCCCCAAGTTCCATTTGCTAAAGCTTTTGAAG 765
Query 728 AAGCAACGGAATCTACTA-TGTTTAGATTCATGATTCCTCC-TTTCATATGGAAACCCCT 785
||||||| || ||||| | |||||||||||||||| ||||| ||| ||||||||||| |
Sbjct 766 AAGCAACAGAGTCTAC-ACTGTTTAGATTCATGATCCCTCCATTT-ATATGGAAACCTAT 823
Query 786 GAAGTT-CTTCGACATCGGGTATGAGAAAGGTCTCAGGAAAGCTGTTGATGTCGTCCATG 844
|| ||| || |||||| |||||||| |||||||||||||||||||||| || || ||||
Sbjct 824 GAGGTTTCT-CGACATAGGGTATGAAAAAGGTCTCAGGAAAGCTGTTGGGGTTGTTCATG 882
Query 845 AGTTTGTCGACAAGATGGTTGTGGATCGTATCTGCAAGCTCAAAGAAGAAGGAACGTTAG 904
||| ||| |||||||| ||||||||||||||||| |||||||||| |||| ||| ||||
Sbjct 883 GGTTCGTCAACAAGATGATTGTGGATCGTATCTGCGAGCTCAAAGAGGAAGAAACATTAG 942
Query 905 GCAACAG-ATCCGATGTCCTCTCAAGGATTATTGAGATAGAAAGTCACAAGACG-ACTGA 962
|| || | | ||||||||||||||||||||| ||||||| ||||| || | | || |
Sbjct 943 ATAATAGGA-CAGATGTCCTCTCAAGGATTATTCAGATAGAGAGTCATAAAAAGGACA-A 1000
Query 963 TGAAAAAGATCCTTCTACCATCAAATTCTTTAGACAATTCTGCACAAGTTTCATCTTAGC 1022
||| | |||||||| ||||||| ||| ||||||||||| ||||||||||| || |||||
Sbjct 1001 TGAGATTGATCCTTCCACCATCAGATTTTTTAGACAATTTTGCACAAGTTTTATTTTAGC 1060
Query 1023 TGGACGAGACACAAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCC 1082
||| ||||| |||||||| ||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 1061 TGGGCGAGATACAAGTTCTGTTGCACTTTCATGGTTCTGCTGGGTGATACAGAAACACCC 1120
Query 1083 AGAAGTCGAAAACAAAATCATCCGTGAGATAAGTGAAATCTTAAGACAGCGAGGGGATTC 1142
||| || ||||||||||||||| | || ||||| |||||||| |||||||||||||||||
Sbjct 1121 AGACGTTGAAAACAAAATCATCTGCGAAATAAGAGAAATCTTGAGACAGCGAGGGGATTC 1180
Query 1143 TCCAACCAGCAAAAACGAGAGTC-TCTTCACGGTCAAAGAACTAAACGACATGGTATATC 1201
||||||||||||| ||||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 1181 TCCAACCAGCAAAGACGAGAG-CATCTTCACGGTCAGAGAACTAAACAACATGGTATATC 1239
Query 1202 TACAAGCAGCACTTTCAGAAACAATGAGACTTTACCCTCCAATACCAATGGAAATGAAAC 1261
||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1240 TACAAGCAGCACTATCAGAAACTCTGAGACTTTTTCCTCCAATTCCAATGGAAATGAAAC 1299
Query 1262 AAGCCA-TCGAAGACGATGTGTTTCCCGATGGGACATTCATACGTAAAGGCTCACGGGTT 1320
|||||| | ||||| |||||||| || ||||||||||||||| | ||||| |||||||||
Sbjct 1300 AAGCCACT-GAAGATGATGTGTTACCAGATGGGACATTCATAAGAAAAGGTTCACGGGTT 1358
Query 1321 TACTT-TGCGA-CTTACGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAA- 1377
||||| | | | || | |||||||||||||||||| | || ||||||||||| ||||||
Sbjct 1359 TACTTCT-CAATCT-ATGCCATGGGAAGGATGGAAGCAATCTGGGGAAAAGATTGTGAAG 1416
Query 1378 TCATTCAAACCAGAGAGATGGATCCAATCAGGGAA-TTTCGTGAATGATGACCAATTTAA 1436
| |||| ||||||||||||||||||| ||||||| ||| || | ||| ||||| || ||
Sbjct 1417 TT-TTCAGACCAGAGAGATGGATCCAAGCAGGGAAGTTT-GTCAGTGACGACCAGTTCAA 1474
Query 1437 ATACGTTGTGTTCAATGCTGGACCAAGGCTGTGTTTAGGGAAAACATTTGCTTACCTACA 1496
||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||| ||
Sbjct 1475 ATACGTTGTATTCAATGCTGGGCCAAGGCTGTGCATAGGAAAAACATTTGCTTACCTGCA 1534
Query 1497 GATGAAGACAATCGCTGCTTCAGTCCTGTCT-AGGTACTCAATAAAGGTTGCTAAAGATC 1555
|||||||| || ||||||||||| ||| | ||||||||||| |||||||| ||||||
Sbjct 1535 GATGAAGATGATAGCTGCTTCAGTTTTGT-TGAGGTACTCAATCAAGGTTGCCCAAGATC 1593
Query 1556 ATGT-AGTTGTCCCCAGAGTAACTAC-AACCTTGTACATGAGGCACGGTCTCAAGGTAAC 1613
| || | ||||||| ||||| || || ||| |||||||||| | |||| ||||| || ||
Sbjct 1594 ACGTCA-TTGTCCCGAGAGTCACGACTAAC-TTGTACATGAAGTACGGCCTCAAAGTGAC 1651
Query 1614 CATCTCGTCAA-AGTCCCTTGAAGAGAAGA 1642
|||| | ||| | || || ||||||||||
Sbjct 1652 CATCACACCAAGA-TCGCTGGAAGAGAAGA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5