BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13150.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471468 jgi|Araly1|471468|fgenesh2_kg.1__1422__AT1G13150.1 2874 0.0
Ahg471467 jgi|Araly1|471467|fgenesh2_kg.1__1421__AT1G13140.1 1657 0.0
> Ahg471468 jgi|Araly1|471468|fgenesh2_kg.1__1422__AT1G13150.1
Length=1824
Score = 2874 bits (1556), Expect = 0.0
Identities = 1739/1828 (95%), Gaps = 10/1828 (1%)
Strand=Plus/Plus
Query 1 GTAATTCCAAAACCAAAATATGAAATGCATCGCAAATCTTTCTTCAAATACTCTTGAAAC 60
|||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 GTAATTCCTAAACCAAAATATGAAATGCATCACAAATCTTTCTTCAAATACTATTGAAAC 60
Query 61 AATGACATCAC--CACA-AACAAAACTGCAGAGAGTTTACTGAGAAGAGACTACAATGTC 117
|||| |||||| || | |||||||||||||| ||||||||||| ||| | |||||||||
Sbjct 61 AATGTCATCACTACAAACAACAAAACTGCAGACAGTTTACTGAG-AGA-ATTACAATGTC 118
Query 118 TTTAACAGAGCGACTTTATAATCATCTTTCTCTCTTCGATCTACTTCTTTCCTTGTTGGG 177
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 119 TTTAACAGAGCGACTTTATAATCATCTTTCTCTCTTCGATCTATTTCTTGCCTTGTTGGG 178
Query 178 GCTCTTTGTTTTCTGCTGTTTGCGTGAGAAGTTAACCAACAAGCGTGGACCAATGCTATG 237
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 GCTCTTTGTTTTCTGCTGCTTGCGTGAGAAGTTAACCAACAAGCGTGGGCCAATGCTATG 238
Query 238 GCCAGT-TTTCGGAATTACTTTAGAGTTTTTCTTTCATATAAATGATGTCTATGGATGGG 296
|||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 GCCAGTGTTT-GGAATTACTTTAGAGTTTTTCTTTCATACGAATGATGTCTATGGATGGG 297
Query 297 TCACAAGGAGTTTGAAAAAATGTCGAGGTACCTTTCTTTATCGGGGAGTTTGGCTTGATG 356
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 298 TCACAAGGAGTTTGAAAAAATGTCGAGGTACGTTTCTTTATCGCGGAGTTTGGCTTGATG 357
Query 357 GGTCTTATGGAGCTGTGACTTGTGTTCCTGCAAATGTCGAGTACATGCTCAAGACTAACT 416
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 358 GGTCTTATGGAGCTGTGACTTGTGTTCCTGCAAATGTCGAGTATATGCTCAAAACTAACT 417
Query 417 TCAAGAACTTCCCAAAAGGTACCTTCTTTAAAAGCCGGTTCAATGATCTGCTCGAGGAAG 476
||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 418 TCAAGAACTTCCCCAAGGGTACCTTCTTTAAAAGCCGGTTCAATGATCTTCTCGAGGATG 477
Query 477 GTATCTTTAATGCTGATGATGATTCTTGGAAGGAGCAACGACGGATCATCATAACCGAAA 536
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 478 GTATCTTTAATGCTGATGATGAGTCTTGGAAGGAGCAGCGACGGATCATCATAACCGAAA 537
Query 537 TGCATTCAACCGGGTTTGTAGAGCATTCCTTTCAGACAACACAACATTTGGTAAGGAAGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCATTCAACCGGGTTTGTAGAGCATTCCTTTCAGACAACACAACATTTGGTAAGGAAGA 597
Query 597 AGCTGTTGAAGGTGATGGAGAGTTTCGCAAAGTCACAAGAAGCTTTCGATCTCCAAGACG 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGCTGTTAAAGGTGATGGAGAGTTTCGCAAAGTCACAAGAAGCTTTCGATCTCCAAGACG 657
Query 657 TGTTCCTGCGCTTGACGTTTGACATCATCTGCCTTGCGGGTCTAGGTGCTGACCCGGAAA 716
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 658 TGTTCCTGCGCTTGACGTTTGACATCATCTGCATCGCGGGTCTAGGTGCTGACCCAGAAA 717
Query 717 CTCTAGCTGTTGATCTTCCCCAAGTTCCATTTGCTAAAGCTTTTGAAGAAGCAACAGAGT 776
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CACTAGCTGCTGATCTTCCCCAAGTTCCATTTGCTAAAGCTTTTGAAGAAGCAACAGAGT 777
Query 777 CTACACTGTTTAGATTCATGATCCCTCCATTTATATGGAAGCCCATGAGGTTCCTCGACA 836
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 778 CTACACTGTTTAGATTCATGATCCCTCCATTTATATGGAAACCTATGAGGTTTCTCGACA 837
Query 837 CAGGATATGAAAAAGGTCTCAGGATAGCTGTTGGGGTCGTGCACGGGTTCGTCGACAAGA 896
||| ||||||||||||||||||| |||||||||||| || || ||||||||| ||||||
Sbjct 838 TAGGGTATGAAAAAGGTCTCAGGAAAGCTGTTGGGGTTGTTCATGGGTTCGTCAACAAGA 897
Query 897 TGATTGTGGATCGTATCTGCGAGCTCAAGGAAGAAGAAACGTTAGACAATAG-ATCTGAT 955
|||||||||||||||||||||||||||| || |||||||| ||||| ||||| | | |||
Sbjct 898 TGATTGTGGATCGTATCTGCGAGCTCAAAGAGGAAGAAACATTAGATAATAGGA-CAGAT 956
Query 956 GTTCTCTCAAGGATTATTCAGATAGAGAGTCATAAAAGGGAAAATGAGATTGATCCTTCC 1015
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 957 GTCCTCTCAAGGATTATTCAGATAGAGAGTCATAAAAAGGACAATGAGATTGATCCTTCC 1016
Query 1016 ACCATTAGATTTTTCAGACAATTTTGCACAAGTTTTATATTAGCTGGACGAGATACAAGT 1075
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1017 ACCATCAGATTTTTTAGACAATTTTGCACAAGTTTTATTTTAGCTGGGCGAGATACAAGT 1076
Query 1076 TCTGTTGCACTTTCATGGTTCTGCTGGGTGATACAGAAACACCCAGAGGTTGAAAACAAA 1135
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1077 TCTGTTGCACTTTCATGGTTCTGCTGGGTGATACAGAAACACCCAGACGTTGAAAACAAA 1136
Query 1136 ATCATCTGCGAGATAAGAGAAATCTTGAGACAGCGAGGGGATTCTCCAACCAGCAAAAAC 1195
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 ATCATCTGCGAAATAAGAGAAATCTTGAGACAGCGAGGGGATTCTCCAACCAGCAAAGAC 1196
Query 1196 GAGAGCCTCTTCACAGTCAAAGAACTAAACAACATGGTATACCTACAAGCAGCACTATCA 1255
|||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1197 GAGAGCATCTTCACGGTCAGAGAACTAAACAACATGGTATATCTACAAGCAGCACTATCA 1256
Query 1256 GAAACTCTGAGACTGTTCCCTCCAATTCCAATGGAAATGAAACAAGCCATTGAAGATGAT 1315
|||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1257 GAAACTCTGAGACTTTTTCCTCCAATTCCAATGGAAATGAAACAAGCCACTGAAGATGAT 1316
Query 1316 GTGTTACCAGATGGGACATTCGTAAGAAAAGGTTCACGGGTTTACTTCTCAATCTATGCC 1375
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTGTTACCAGATGGGACATTCATAAGAAAAGGTTCACGGGTTTACTTCTCAATCTATGCC 1376
Query 1376 ATGGGAAGGATGGAATCAATCTGGGGAAAAGATTGTGAAATTTTCAGACCAGAGAGATGG 1435
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 ATGGGAAGGATGGAAGCAATCTGGGGAAAAGATTGTGAAGTTTTCAGACCAGAGAGATGG 1436
Query 1436 ATCCAAGCAGGGAAGTTTGTCAGTGACGACCAGTTCAAATACGTTGTATTCAATGCTGGA 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATCCAAGCAGGGAAGTTTGTCAGTGACGACCAGTTCAAATACGTTGTATTCAATGCTGGG 1496
Query 1496 CCAAGGCTGTGCATAGGAAAAACATTTGCTTACCTGCAGATGAAGATGATAGCTGCTTCA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CCAAGGCTGTGCATAGGAAAAACATTTGCTTACCTGCAGATGAAGATGATAGCTGCTTCA 1556
Query 1556 GTTTTGTTGAGGTACTCAATCAAGGTTGTCCAAGATCATGTCATAGCCCCGAGAGTCACA 1615
|||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||
Sbjct 1557 GTTTTGTTGAGGTACTCAATCAAGGTTGCCCAAGATCACGTCATTGTCCCGAGAGTCACG 1616
Query 1616 ACTAACTTGTACATGAAGTACGGCCTCAAAGTAACCATCACACCAAGGTCGCTGGAAGAG 1675
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1617 ACTAACTTGTACATGAAGTACGGCCTCAAAGTGACCATCACACCAAGATCGCTGGAAGAG 1676
Query 1676 AAGAAACTTGAGTCATGTTCCATGTAGAAGATTTGTAAACTATAATACCTTAGAGGAACT 1735
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1677 AAGAAACTTGAGTCATGTTCCATGTAGAATATTTGTAAACTATAATATCTTAGAGGAACT 1736
Query 1736 CAATTTTACTGTTGAATACTAAAACCACAATTAAACATTTTT-GACCTTTAACTATCTCA 1794
|| |||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 1737 CAGTTTTACTGCTGAATACTAAAACCACAATTTAACATTTTTTGACCTTTTACTATCTCA 1796
Query 1795 ATGAAAAAGTATATACCTGTTTTGGAGC 1822
||| ||||||||||||||||||||||||
Sbjct 1797 ATGTAAAAGTATATACCTGTTTTGGAGC 1824
> Ahg471467 jgi|Araly1|471467|fgenesh2_kg.1__1421__AT1G13140.1
Length=1686
Score = 1657 bits (897), Expect = 0.0
Identities = 1364/1587 (86%), Gaps = 42/1587 (3%)
Strand=Plus/Plus
Query 113 ATGTCTTTAACAGAGCGACTTTATAATCATCTTTCTCTCTT-CGAT-CTACTTCTTTCCT 170
||||||||||||||| || ||||||||||||||| ||| || |||| | | ||| |||
Sbjct 1 ATGTCTTTAACAGAGAGAGTTTATAATCATCTTTGTCT-TTCCGATGTTTC-TCTGGCCT 58
Query 171 TGTTGGGGCTCTTTGTTTTCTGCTGTTTGCGTGAGAAGTTAACCAACAAGC-GTGGACCA 229
||||||| |||||||||||||| || ||||||||||| ||||||| |||| | || |||
Sbjct 59 TGTTGGGACTCTTTGTTTTCTGTTGCGTGCGTGAGAAGGTAACCAAAAAGCAG-GGGCCA 117
Query 230 ATGCTATGGCCAGTTTTCGGAATTACTTTAGAGTTTTTCTTTCATATAAATGATGTCTAT 289
| | ||||||| || |||||||| ||| |||||| |||||||| | |||||||| |||
Sbjct 118 ACGATATGGCCTGTGTTCGGAATAACTCCAGAGTTCTTCTTTCACAGGAATGATGTTTAT 177
Query 290 GGATGGGTCACAAGGA-GTTTGAAAAAATGTCGAGGTACCTTTCTTTATCGGGGAGTTTG 348
|| |||||||||| || |||||||||||||||||||||| ||||| ||| ||| | ||
Sbjct 178 GGTTGGGTCACAA-GATGTTTGAAAAAATGTCGAGGTACTTTTCTCTATAACGGAATCTG 236
Query 349 GCTTGATGGGTCTTATGGAGCTGTGACTTGTGTTCCTGCAAATGTCGAGTACATGCTCAA 408
||||| |||||||| |||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 237 GCTTGGTGGGTCTTCTGGAGCTGTGACTTGTGTCCCTGCGAACGTCGAATACATGCTCAA 296
Query 409 GACTAACTTCAAGAACTTCCCAAAAGGTACCTTCTTTAAAAGC-CGGTTCAATGATCTGC 467
|||||||||||||||||||||||||||| |||| ||| |||| ||||| |||||||||
Sbjct 297 GACTAACTTCAAGAACTTCCCAAAAGGTGCCTT-TTTCAAAGAACGGTTTGATGATCTGC 355
Query 468 TCGAGGAAGGTATCTTTAATGCTGATGATGATTCTTGGAAGGAGCAACGACGGATCATCA 527
| ||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 356 TTGAGGATGGTATCTTTAATGCTGATGCTGAGTCTTGGAAGGAGCAGCGACGGATCATCA 415
Query 528 TAACCGAAATGCATTCAACCGGGTTTGTAGAGCATTCCTTTCAGACAACACAACATTTGG 587
|||||||||||||||||||| |||| || ||||||||||||||||| |||||| ||||||
Sbjct 416 TAACCGAAATGCATTCAACCAGGTTCGTGGAGCATTCCTTTCAGACTACACAAGATTTGG 475
Query 588 TAAGGAAGAAGCTGTTGAAGGTGATGGAGAGTTTCGCAAAGT-CACAAGAAGCTTTCGAT 646
|||||||||||||||| ||||||||||||| ||| |||| || | ||||| || |||||
Sbjct 476 TAAGGAAGAAGCTGTTAAAGGTGATGGAGAATTTTGCAA-GTTCTCAAGAGGCATTCGAC 534
Query 647 CTCCAAGACGTGTTCCTGCGCTTGACGTTTGACATCATCTGCCTTGCGGGTCTAGGTGCT 706
|||||||| ||| || |||||||||| ||||||| ||||||| | || |||||||||| |
Sbjct 535 CTCCAAGATGTGCTCTTGCGCTTGACATTTGACAACATCTGCATCGCCGGTCTAGGTGAT 594
Query 707 GACCCGGAAACTCTAGCTGT-TGATCTTCCCCAAGTTCCATTTGCTAAAGCTTTTGAAGA 765
||||||| |||||| | | | ||||||||||| |||||||||||| |||||||||||||
Sbjct 595 GACCCGGGAACTCTGGAT-TCTGATCTTCCCCTTGTTCCATTTGCTCAAGCTTTTGAAGA 653
Query 766 AGCAACAGAGTCTACACTGTTTAGATTCATGATCCCTCCATTTATATGGAAGCCCATGAG 825
|||||| || ||||| ||||||||||||||||| ||||| ||||||||||| ||| |||
Sbjct 654 AGCAACGGAATCTACGCTGTTTAGATTCATGATTCCTCCTTTTATATGGAAACCCTTGAA 713
Query 826 GTTCCTCGACA-CAGGATATGA-AAAAGGTCTCAGGATAGCTGTTGGGGTCGTGCACGGG 883
|||| |||||| | || ||||| ||||| |||||||| |||||||| |||||| || | |
Sbjct 714 GTTCTTCGACATCGGG-TATGAGAAAAG-TCTCAGGAAAGCTGTTGAGGTCGTCCATGAG 771
Query 884 TTCGTCGACAAGATGATTGTGGATCGTATCTGCGAGCTCAAGGAAGAAGAAACGTTAG-A 942
|| |||||||||||| ||||||||||||| ||| | ||||| || |||| |||||||| |
Sbjct 772 TTTGTCGACAAGATGGTTGTGGATCGTATTTGCAAACTCAAAGAGGAAGGAACGTTAGGA 831
Query 943 CAATAGATCTGATGTTCTCTCAAGGATTATTCAGATAGAGAGTCATAA-AAGGGAAAATG 1001
|| ||||| ||||| ||||| |||||||| ||||||| | ||| || ||| | ||
Sbjct 832 -AACAGATCCGATGTCCTCTCGCGGATTATTGAGATAGAAAATCACAAGAAGACTGA-TG 889
Query 1002 AGATTGATCCTTCCACCATTAGATT-TTTCAGACAATTTTGCACAAGTTTTATATTAGCT 1060
| | |||||||||||||| | ||| ||| |||||||| ||||||||||| || ||||||
Sbjct 890 AAAAAGATCCTTCCACCATCAAATTCTTT-AGACAATTCTGCACAAGTTTCATCTTAGCT 948
Query 1061 GGACGAGATACAAGTTCTGTTGCACTTTCATGGTTCTGCTGGGTGATACAGAAACACCCA 1120
|||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 949 GGACGAGACACAAGTTCAGTTGCACTTACATGGTTCTTCTGGGTGATACAGAAACATCCA 1008
Query 1121 GAGGTTGAAAACAAAATCATCTGCGAGATAAGAGAAATCTTGAGACAGCGAGGGGATTCT 1180
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 GAAGTCGAAAACAAAATCATCTGCGAGATAAAAGAAATCTTGAGACAGCGAGGGGATTCT 1068
Query 1181 CCAACCAGCAAAAACGAGAGCCTCTTCACAGTCAAAGAACTAAACAACATGGTATACCTA 1240
||||||||||| || ||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1069 CCAACCAGCAACAATGAGAGTCTCTTCACGGTCAAAGAACTAAACGACATGGTATACCTA 1128
Query 1241 CAAGCAGCACTATCAGAAACTC-TGAGACTGTTCCCTCCAATTCCAATGGAAATGAAACA 1299
||||||||||| |||||||| | ||||||| | ||||||||| |||||||||||||||||
Sbjct 1129 CAAGCAGCACTTTCAGAAAC-CATGAGACTATACCCTCCAATACCAATGGAAATGAAACA 1187
Query 1300 AGCCATTGAAGATGATGTGTTACCAGATGGGACATTCGTAAGAAAAGGTTCACGGGTTTA 1359
|||||||||||| ||||| || || |||||||| ||| || | |||||||||||||||||
Sbjct 1188 AGCCATTGAAGACGATGTTTTTCCCGATGGGACTTTCATACGTAAAGGTTCACGGGTTTA 1247
Query 1360 CTTCT-CAATCT-ATGCCATGGGAAGGATGGAATCAATCTGGGGAAAAGATTGTGAAATT 1417
||| | | | || | |||||||||||||||||||| || ||||||||||| |||||| |
Sbjct 1248 CTT-TGCGA-CTTACGCCATGGGAAGGATGGAATCCATATGGGGAAAAGACTGTGAA-TC 1304
Query 1418 -TTCAGACCAGAGAGATGGATCCAAGCAGGGAAGTTT-GTCAGTGACGACCAGTTCAAAT 1475
|||| ||||||||||||||||||||||||||| ||| || | || || || |||||||
Sbjct 1305 ATTCAAACCAGAGAGATGGATCCAAGCAGGGAA-TTTCGTGAACGAGGAACAATTCAAAT 1363
Query 1476 ACGTTGTATTCAATGCTGGACCAAGGCTGTGCATAGGAAAAACATTTGCTTACCTGCAGA 1535
||||||| || |||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 1364 ACGTTGTGTTTAATGCTGGGCCAAGGCTGTGTTTAGGAAAAACATTTGCTTATCTGCAGA 1423
Query 1536 TGAAGAT-GATAGCTGCTTCAGTTTTGTTGAGGTACTCAATCAAGGTTGTCCAA-GATCA 1593
|||||| | | ||||||||||| |||||||||||||| |||||||||| | || |||||
Sbjct 1424 TGAAGACAG-TCGCTGCTTCAGTCTTGTTGAGGTACTCTATCAAGGTTG-CTAAAGATCA 1481
Query 1594 TGTCATAG-CCCCGAGAGTCACAACTAACTT-GTACATGAAGTACGGCCTCAAAGTAACC 1651
| || ||| |||| ||||| || || ||||| |||||||||| |||| ||||| ||||||
Sbjct 1482 TATCGTAGTCCCC-AGAGTTACGAC-AACTTTGTACATGAAGCACGGTCTCAAGGTAACC 1539
Query 1652 ATCACACCAAGGTCGCTGGAAGAGAAG 1678
||| |||||| ||| |||||||| |||
Sbjct 1540 ATCTCACCAAAGTCCCTGGAAGATAAG 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5