BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13160.1
Length=2654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471469 jgi|Araly1|471469|fgenesh2_kg.1__1423__AT1G13160.1 4189 0.0
Ahg328571 jgi|Araly1|328571|fgenesh1_pm.C_scaffold_7000798 702 0.0
Ahg920141 jgi|Araly1|920141|scaffold_101422.1 292 7e-78
> Ahg471469 jgi|Araly1|471469|fgenesh2_kg.1__1423__AT1G13160.1
Length=2641
Score = 4189 bits (2268), Expect = 0.0
Identities = 2511/2627 (96%), Gaps = 21/2627 (1%)
Strand=Plus/Plus
Query 37 CAAAACCTCCGATAATGTCCGGCA-GTCTAGGTTTAACGCCGGCATCCTTAAAGGCATCT 95
||||||||| || |||| |||| | ||||||||||||||||| ||||||||||||||||
Sbjct 23 CAAAACCTCTGAAAATGGCCGG-ATCTCTAGGTTTAACGCCGGAATCCTTAAAGGCATCT 81
Query 96 GGCCGGAGCTCCGAGAATGTCAGTCTTCTTACCCTTCAAGGTAAAATCAAACGTGACCCA 155
||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 82 GGCCGGAGCTCAGAGAATCTCAGCCTTCTTATCCTTCAAGGTAAAATCAAACGTGACCCA 141
Query 156 GAAGGTTACGAAACAGAGCTCCAATTGATTTACAAACAGTTCAAAACCTCCGTCGATCTC 215
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 142 GAAGGTTACGAAACAGAGCTCCAGTTGATTTACAAACAGTTCAAAACCTCCGTCGATCTC 201
Query 216 TTCCATG-AACTAGCAGCTCTCAGTTTCTCCTCCACTGGTGGCATTGGCTCTGACCCTTC 274
||||| | ||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 202 TTCCA-GCAACAAGCAGCTCTCAGTTTCTCCTCCGTTGGTGGCATTGGATCTGACCCTTC 260
Query 275 TGTTTCGAAAGACCTCGGCGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTTTACCC 334
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TGTTTCCAAAGACCTCGGTGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTTTACCC 320
Query 335 GAAGCAACTCGCGGCGTTTCCAGCTCAATTAACTGGTTTACTCCGTACTTCGTGCTTAGC 394
|||||||||| ||| ||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 321 GAAGCAACTCTCGGAGTTTCCAGCTCAATTGACTGACTTACTCCGTACTTCTTGCTTAGC 380
Query 395 TATGCCCTCGGGGCTTCGAAACCATATTGCACAAGCTCTGATCCTTCTAATGAATCGAAA 454
||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 381 AATGCCCTCGGGTCTTCGAAACCATGTTGCACAAGCTCTGATTCTTCTAATGAATCGAAA 440
Query 455 GAGTCTTGTCATCGAGGATTTGCTGGCTTTGTTTCTGGATATTCAGACTCTTGGTGACAA 514
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 441 GAGTCTTGTCATCGAGGATTTGCTGGCTTTATTTCTGGATATTCAGACTCTTGGTGACAA 500
Query 515 AAACCTGCGAAATCTTGCTTTTGGTCACATTGTTCAAACCATTCGTAAGATGAGTATCAC 574
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AAACCTGCGAGCTCTTGCTTTTGGTCACATTGTTCAAACCATTCGTAAGATGAGTATCAC 560
Query 575 CGATCCCAAGCACAAATCACTTCAGAAGATTGTAATCTCTATGTTGGAGCAAGAAGATGA 634
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 561 TGATCCCAAGCACAAATCACTTCAGAAGATTGTGATCTCTATGTTAGAGCAAGAAGATGA 620
Query 635 AGCAAAGGCTAAGAGAGCACTTGCTACTCTCTGTGCGCTACACAAGAAAAAGATCTGGCT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 621 AGCAAAGGCTAAGAGAGCACTTGCTACTCTCTGTGCGCTACACAAGAAAAAGATATGGCT 680
Query 695 TGGTGATAAAAATGAAAGAGTTGCAATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACC 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TGGTGATAAAAATGAAAGAGTTGCAATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACC 740
Query 755 TAGGATTATGATTTCCGCTCTTCGGTTTCTTCTTGATTATGAGAACATAGACGATGATGA 814
|||||| ||||| || |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 741 TAGGATAATGATCTCTGCTCTTCGATTTCTTCTTGACTATGAGAACATTGACGATGATGA 800
Query 815 CGATAGTGATGCTGAAAGCGATGATGACGAGGAGTCA-AAGAAAATAGATCAGGTTGTGA 873
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 801 CGATAGTGATGCTGAAAGCGATGATGACGAGGA-TAATAAGAAAATAGATCAGGTTGTGA 859
Query 874 TTAATCGACAGGCTGTTTACAAGGCAAACAACAAAGGTACATCCTCTAGCAAGAAGAAAA 933
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TTAATCGACAGGCTATTTACAAGGCAAACAACAAAGGTACATCCTCTAGCAAGAAGAAAA 919
Query 934 AGCAAGCAAAACTTCAGCGTGCAGTGAAAAGTATTAAAAGAAAGCAGCGTTCGTCGTCTG 993
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGCAAGCAAAACTACAGCGTGCAGTGAAAAGTATTAAAAGAAAGCAGCGTTCGTCGTCTG 979
Query 994 AGAACACCACTTCAACATTTTCACCTCTTAATCATTTAAATGATGCGCAGAAATTCGCAG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AGAACACCACTTCAACATTTTCACCTCTTAATCATTTAAATGATGCGCAGAAATTCGCAG 1039
Query 1054 AGAAATTGTTTTCCCGTCTTCAGACCATCAAGGGCAGTGGTGAACGTGTTGAGACTAGGT 1113
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1040 AGAGATTGTTTTCCCGTCTTCAGACCATCAAGGGCTCTGGTGAACGTGTTGAGACCAGGT 1099
Query 1114 TGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCATTTACTAAGTT 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1100 TGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCATTTGCTAAGTT 1159
Query 1174 TCTATCCTTTTCTTCAAAACTATGCTCTGCCGCATGTAAAGGACATTACACAAATACTTG 1233
| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1160 TTTATTCTTTTCTTCAAAACTACGCTATGCCGCATGTAAAGGACATTACACAAATACTTG 1219
Query 1234 CAGCAGCAGTTCAATCTTGCCACGATGGGGTTCCTTCTGATGTTGTGGAGCCACTGTTCA 1293
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1220 CAGCAGCAGTTCAATCTTGCCATGATGGGGTTCCTTCTGATGCTGTGGAGCCACTGTTCA 1279
Query 1294 AGCAAATTGTGAATCAGTTTGTACACGACAAGTCACGTCCTGAGGCTATTGCTGTCGGAC 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 AGCAAATTGTGAATCAGTTTGTACACGACAAGTCACGTCCTGAGGCTATTGCTGTCGGAC 1339
Query 1354 TCAATGTGGTGCGAGAAATGTGCCTGAGGGTTCACGACTTGATGACAGAAGAGTTACTGC 1413
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1340 TCAATGTGGTACGAGAAATGTGCCTGAGGATTCACGACTTGATGACAGAAGAGTTGCTGC 1399
Query 1414 AAGATCTTGCTCTGTATAAAAAGTCCCATGAAAAAGCCATCTCAGCAGCAGCACGTTCCC 1473
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1400 AAGATCTTGCTCTGTATAAAAAGTCCCATGAAAAAGCCATCTCAGCAGCAGCTCGTTCCC 1459
Query 1474 TCATAGCATTGTTCAGAGAGATCAACCCTTCGCTTCTGGTTAAAAAAGATCGTGGCCGTC 1533
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1460 TCATAGCATTGTTCAGAGAGATCAACCCTTCGCTTCTGGTGAAAAAAGATCGTGGCCGTC 1519
Query 1534 CTGGAGCTACCGTCTTCATA-CCTAAACATTATGGAGAGTCTAATGTCTTCAGCAATGTT 1592
||||||||||| | | || | |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1520 CTGGAGCTACCAT-TGCAAAACCTAAACAATATGGGGAGTCTAATGTCTTCAGCAATGTT 1578
Query 1593 CCTAATGTTGAATTATTGCAAGAAAGTGATAATGAGAGTGGCTCTGATGGTGATCAAGAC 1652
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 CCCAATGTTGAATTATTGCAAGAAAGTGATAATGAGAGTGGCTCTGATGGTGATCAAGAC 1638
Query 1653 GATGATGGCGTGGAGTTGCCTATCGGCGATGATGTTGAGCAGGAGCTGATACCTGGTGAT 1712
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 1639 GATGATGACGTGGAGTTGCCTATCGGCGATGAAGTTGAGCAGGAGGTGATACCTGATGAT 1698
Query 1713 TGTGGAAGCGAGGACAAAGCTGAAGAAGATTCCAATGATGGTGATGATATGAATAACACT 1772
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TGTGGAAGCGAGGACGAAGCTGAAGAAGATTCCAATGATGGTGATGATATGAATAACACT 1758
Query 1773 GAAGACGATAGTGATATAGATACTTCAATAGGTGGTGATGAAGATGAAGAGGTGAATGAC 1832
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 GAAGATGATAGTGATATTGATACTTCAATAGGTGGTGATGAAGATGAAGAGGTGAATGAC 1818
Query 1833 AGTGATGAAGCTGATACAGATTCGGAAAATGAGGAAATCGAAAGCGAAGAAGAGGATGGA 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1819 AGTGATGAAGCTGATACAGATTCGGAAAATGAGGAAATCGAAAGCGAAGAAGACGATGGA 1878
Query 1893 GAAGCTTCTGATTCTTCTGTAGAGGATAGTGGAAACAAAGAGAAAGCTAAGGGCAAGAAG 1952
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1879 GAAGCTTCTGATTCTTCTGTAGAGGATAATGGAAACAAAGAGAAAGCTAAGGGCAAGAAG 1938
Query 1953 AGGAAGATTGTAGATTTTGATGCGAATCTTCTCTCTGCTGATACAAGCCTCCGAGCACTC 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 AGGAAGATTGTAGATTTTGATGCGAATCTTCTCTCTGCTGATACAAGCCTCCGAGCACTC 1998
Query 2013 AAGAGAT-TCGCAGAAGCAAAGAACGAAAAGCCTTCTTTTGATGAAGGTGATGGCATACT 2071
||||||| | |||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 1999 AAGAGATAT-GCAGAAGCAAAGAACGAAAAACCATCTTTTGATGAAAGTGATGGCATACT 2057
Query 2072 TTCGAATGAGGACTTCCGAAAAATCAAA-ACACTTCAGGCAAAGAAGGAAGCAAAAATTG 2130
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2058 TTCGAATGAGGACTTCCGAAAAATCAAAGA-ACTTCAGGCAAAGAAGGAAGCAAAAATTG 2116
Query 2131 CATTGGCTCGAAAAGGATTCAAGGTTCCGAATTCTGATCAGCTAAGCAAGAAGCGGGTCG 2190
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2117 CATTGGCTCGAAAAGGATTCAAGGTTCCGGATTCTGATCAGCTAAGCAAGAAGCGGGTCG 2176
Query 2191 ATCCAGCCAAACTTGAAGCTCACATAAGGCATAAACTAACAAAGGAACAAAGACTGGAAT 2250
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2177 ATCCAGCCAAACTTGAAGCTCACATAAGGCATAAACTAACAAAAGAACAAAGACTGGAAT 2236
Query 2251 TAGTTAAAGCGGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGA 2310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 TAGTTAAAGCGGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGA 2296
Query 2311 AGAAGACTGGAGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTG 2370
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 AGAAGACGGGAGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTG 2356
Query 2371 CAATAAGATCAAAGGCTGGTAAATCAAAACGAATTAAGAAGATGAAGAATAGCATCAGCG 2430
||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 2357 CAATAAGATCAAAGGCTGGGAAATCAAAGCGAACTAAGAAGATGAAGAATAGCATCAGCG 2416
Query 2431 GAAGCCAGTTTAGAGGAAGGAAAGCTTGGAAGTGAAAAAATGACCAA-ATCTCTCAATTC 2489
||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||
Sbjct 2417 GAAGCCAGTTTAGAGGAAGGAAAGCTTGGAAGTGAAAAAATGACCTACA-CTCTTAATTC 2475
Query 2490 TTCCGTCTCAAAACT-ATACACAgttttgttttggttcagtttttgcataattatgtttt 2548
||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2476 TTCGGTCTCAAAACTGA-ACACAGTTTTGTTTTGGTTCATTTTTTGCATAATTATGTTTT 2534
Query 2549 gttctttg--t-ctgcagttttgATATTGAGGTATCGGCATAAAA--TTGTCGTTTTTCC 2603
|| || || | ||||||||||||||||||||| || ||| |||| ||||| |||||||
Sbjct 2535 GTCCTATGCCTGCTGCAGTTTTGATATTGAGGTCTCAGCACAAAACGTTGTCCTTTTTCC 2594
Query 2604 TGTCATCATACGTTTTATTTACAGTGGGATTAATAAATTACTATTTT 2650
||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 2595 TGTCATCATACGTTTTATTTACAGTGGGAGTAATAAATTCCTGTTTT 2641
> Ahg328571 jgi|Araly1|328571|fgenesh1_pm.C_scaffold_7000798
Length=2208
Score = 702 bits (380), Expect = 0.0
Identities = 505/565 (89%), Gaps = 10/565 (2%)
Strand=Plus/Plus
Query 1906 CTTCTGTAGAGGATAGTGGAAACAAAGAGAAAGCTA-AGGGCAAGAAGAGGAAGATT-GT 1963
||||||| |||| ||||||||||| ||||||||| | |||| ||||| |||||| || ||
Sbjct 1649 CTTCTGTGGAGGGTAGTGGAAACAGAGAGAAAGC-AGAGGGGAAGAAAAGGAAG-TTAGT 1706
Query 1964 AGATTTTGATGCGAATCTT-CTCTCTGCTGATACAAGCCTCCGAGCACTCAAGAGATTCG 2022
|||||||||||||| | || ||| |||||||||||||||| |||||||| ||||||| ||
Sbjct 1707 AGATTTTGATGCGAGT-TTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATGCG 1765
Query 2023 CAGAAGCAAAGAACGAAAAGCCTTCTTTTG-ATGAAGGTGATGGCATACTTTCGAATGAG 2081
|||||||||||| ||| |||| ||||||| | ||| | |||||||||||||| ||||||
Sbjct 1766 CAGAAGCAAAGAGGGAACAGCCATCTTTTGCA-GAAAGAGATGGCATACTTTCCAATGAG 1824
Query 2082 GACTTCCGAAAAATCAAA-ACACTTCAGGCAAAGAAGGAAGCAAAAATTGCATTGGCTCG 2140
||||||| |||||||||| | |||| ||||||||||||| || |||||||||||||||||
Sbjct 1825 GACTTCCAAAAAATCAAAGA-ACTTAAGGCAAAGAAGGATGCGAAAATTGCATTGGCTCG 1883
Query 2141 AAAAGGATTCAAGGTTCCGAATTCTGATCAGCTAAGCAAGAAGCGGGTCGATCCAGCCAA 2200
|||||||||||| |||||| |||||||| ||||||| ||||||| |||| ||||||||||
Sbjct 1884 AAAAGGATTCAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCCAA 1943
Query 2201 ACTTGAAGCTCACATAAGGCATAAACTAACAAAGGAACAAAGACTGGAATTAGTTAAAGC 2260
||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||
Sbjct 1944 ACTTGAAGCTCACATAAGGCATAAACTAACAAAAGAAGAAAGGCTGGAGTTAGTTAAAGC 2003
Query 2261 GGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGAAGAAGACTGG 2320
||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||
Sbjct 2004 GGGTAGGGAGGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACCGG 2063
Query 2321 AGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTGCAATAAGATC 2380
|||||| ||||||| ||||||||| |||| ||||||||||||||| |||||| |||||||
Sbjct 2064 AGGATCGAGCAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCATTAAGATC 2123
Query 2381 AAAGGCTGGTAAATCAAAACGAATTAAGAAGATGAAGAATAGCATCAGCGGAAGCCAGTT 2440
||||||||| |||||||| ||| | ||||| | |||||||||| ||||||||||||||||
Sbjct 2124 AAAGGCTGGGAAATCAAAGCGAGTCAAGAAAAAGAAGAATAGCCTCAGCGGAAGCCAGTT 2183
Query 2441 TAGAGGAAGGAAAGCTTGGAAGTGA 2465
||||||||||||||||||||||||
Sbjct 2184 CAGAGGAAGGAAAGCTTGGAAGTGA 2208
Score = 621 bits (336), Expect = 8e-177
Identities = 515/601 (86%), Gaps = 14/601 (2%)
Strand=Plus/Plus
Query 303 ATGTTTCTAGCTCACGTTACTCCCTTTTACCCGAAGCAACTCGCGGCGTTTCCAGCTCAA 362
|||||||| ||||| || ||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
Query 363 TTAACTGGTTTACTCCGTACTTCGTGCTTAGCTATGCCCTCGGGGCTTCGAAACCATA-T 421
|| |||| |||||||||||| || ||| | || ||||| ||||||||||| | || | |
Sbjct 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTATCA-AGT 119
Query 422 TGCACAAGCTCTGATCCTTCTAATGAATCGAAAGAGTCTTGTCATCGAGGATTTGCTGGC 481
||| ||| ||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||
Sbjct 120 TGCGCAATCTCTGATTCTTCTTATGTATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGC 179
Query 482 TTTGTTTCTGGATATTCAGACTCTTGGTGACAAAAACCTGCGAAATCTTGCTTT-TGGTC 540
| ||||||| |||||||||||||||||||| |||||| ||||||| |||||||| | ||
Sbjct 180 TCTGTTTCTAGATATTCAGACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTC-TC 238
Query 541 ACATTGTTCAAACCATTCGTAAGATGAGTATCACCGATCCCAAG-CACAAATCACTTCAG 599
|||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||
Sbjct 239 ACATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCC-AAGGCACAAATCTCTTCAG 297
Query 600 AAGATTGTAATCTCTATGTTGGAGCAAGAAGATGAAGCAAAGGCTAAGAGAGCACTTGCT 659
|||||||| || ||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 298 AAGATTGTTTTCGCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTT 357
Query 660 ACTCTCTGTGCGCTACACAAGA-AAAAGATCTGGCTTGGTGATAAAAATGAAAGAGTTGC 718
|| || |||| ||| ||||||| ||||| ||||| ||||||||||| |||| ||||| ||
Sbjct 358 ACCCTTTGTGAGCTTCACAAGAGAAAAG-TCTGGTTTGGTGATAAACATGACAGAGTAGC 416
Query 719 AATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACCTAGGATTATGATTTCCGCTCTTCG 778
|||||| ||||||||||||||||||||| ||||||||||||| | ||| || | |||||
Sbjct 417 AATTGCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCG 476
Query 779 GTTTCTTCTTGATTATGAGAACAT-AGACGATGATGACGATAGTGATGCTGAAAGC-GAT 836
|||||||||||| || || ||||| | ||||||| || |||||||||||| |||| |
Sbjct 477 GTTTCTTCTTGACTACGACAACATTA-ACGATGAGGATGATAGTGATGCTTCAAGCAGC- 534
Query 837 GATGACGAGGAGTCAAAGAAAATAGATCAGGTTGTGATTAATC-GACAGGCTGTTTACAA 895
||||||||||| ||||||||| || |||||||||| |||| | || |||||||||||||
Sbjct 535 GATGACGAGGATTCAAAGAAAGTATCTCAGGTTGTGTTTAA-CAGAGAGGCTGTTTACAA 593
Query 896 G 896
|
Sbjct 594 G 594
Score = 472 bits (255), Expect = 8e-132
Identities = 462/557 (83%), Gaps = 33/557 (6%)
Strand=Plus/Plus
Query 1103 TGAGACTAGGTTGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCA 1162
|||||| ||||||||||| || ||||||||||| || || ||| |||||||||||||||
Sbjct 906 TGAGACCAGGTTGATGATTATAAAAGTTATTGCACGAACTATTAGTCTTCACAAGTTGCT 965
Query 1163 TTTACT-AAGTTTCTATCCTTTTCTTCAAAACTATGCT-CTGCCGCATGTAAAGGACATT 1220
|||| | || ||| ||| ||| ||||||| |||||||| | | |||||||||||||
Sbjct 966 TTTATTCAAATTT-TATACTTATCTTCAAGACTATGCTAAGGATG-GTGTAAAGGACATT 1023
Query 1221 ACACAAATACTTGCAGCAGCAGTTCAATCTTGCCACGATGGGGTTCCTTCTGATGTTGTG 1280
|||||||||||||||||||||||||| ||||||| |||||||| ||||| |||| |||
Sbjct 1024 ACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGATGGGGTACCTTCGGATGCCGTG 1083
Query 1281 GAGCCACTGTTCAAGCAAATTGTGAATCAGTTTGTACACGA-CAAGTCACGTCCTGAGGC 1339
||||||||||||||| |||| |||||| ||||| ||||||| | ||| |||| |||||
Sbjct 1084 GAGCCACTGTTCAAGAAAATAGTGAATGAGTTTTTACACGATCGC-TCAAGTCCGGAGGC 1142
Query 1340 TATTGCTGTCGGACTCAATGTGGTGCGAGAAATGTGCCTGAGGGTTCACGACTTGATGAC 1399
|||| |||||| |||||||||||| |||||||||||||| ||| ||| ||| ||||||||
Sbjct 1143 TATTCCTGTCGCACTCAATGTGGTACGAGAAATGTGCCTTAGGATTCCCGAGTTGATGAC 1202
Query 1400 AGAAGAGTTACTGCAAGATCTTGCTCTGTATAAAA---A------GT-CC---C--AT-G 1443
|||||| || ||||| |||||||||| |||||||| | || || | || |
Sbjct 1203 AGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGATAAAAAGTACCGTACCCATAG 1262
Query 1444 AAAAAGCCATCTCAGCAGCAGCA-CGTTCCCTCATAGCATTGTTCAGAGAGATCAACCCT 1502
|||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1263 AAAA-GCCATCTCAGCAGCATCTGC-TTCCCTCATAGCATTGTTCAGAGAGATCAACCCT 1320
Query 1503 TCGCTTCTGGTTAAAAAAGATCGTGGCCGTCCTGGAGCT-ACCGTCTTC-ATACCTAAAC 1560
| ||| || || |||||||| |||||||||||||||| | || | | | | |||||||
Sbjct 1321 TTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCACA-T-TGCCAGACCTAAAA 1378
Query 1561 ATTATGGAGAG-TCTAATGTCTTCAGCAATGTTCCTAATGTTGAATTATTGCAAGAAAGT 1619
| |||||||| || ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1379 AGTATGGAGAAATC-AATGTCTTCAGTAATGTTCCCAATGTTGAGTTATTGCAAGAAAGT 1437
Query 1620 GATAATGA-GA-GTGGC 1634
||| |||| || |||||
Sbjct 1438 GATGATGATGAAGTGGC 1454
> Ahg920141 jgi|Araly1|920141|scaffold_101422.1
Length=1012
Score = 292 bits (158), Expect = 7e-78
Identities = 208/231 (90%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 154 CAGAAGGTTACGAAACAGAGCTCCAATTGATTTACAAA-CAGTTCAAAACCTCCGTCGAT 212
||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||
Sbjct 352 CAGAAAGTTACGAAACGGAGCTCCAATTGATTTACAAACCA-TTTAAAACCTCCGTCGAT 410
Query 213 CTCTTCCATG-AACTA-GCAGCTCTCAGTTTCTCCTCCACTGGTGGCATTGGCTCT-GAC 269
||||| || | ||| | || ||||||| |||||||||| |||||||||||||| | |||
Sbjct 411 CTCTTTCA-GCAAC-AGGCGGCTCTCACTTTCTCCTCCGTTGGTGGCATTGGCT-TAGAC 467
Query 270 CCTTCTGTTTCGAAAGACCTCGGCGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTT 329
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 468 CCTTCTGTTTCCAAAGACCTCGTTGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTT 527
Query 330 TACCCGAAGCAACTCGCGGCGTTTCCAGCTCAATTAACTGGTTTACTCCGT 380
||||||||||||||||||||||||||| ||||||| |||| |||||| |||
Sbjct 528 TACCCGAAGCAACTCGCGGCGTTTCCATCTCAATTGACTGATTTACTTCGT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100101163860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5