BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13170.2
Length=3116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471470 jgi|Araly1|471470|fgenesh2_kg.1__1424__AT1G13170.1 2606 0.0
> Ahg471470 jgi|Araly1|471470|fgenesh2_kg.1__1424__AT1G13170.1
Length=2899
Score = 2606 bits (1411), Expect = 0.0
Identities = 1640/1745 (94%), Gaps = 38/1745 (2%)
Strand=Plus/Plus
Query 32 ctctctctct-tctctATGCAGAGTCTCTGCACACTGCACAAACACaaaaaaaTTTTACT 90
|||||||||| ||||| ||| |||||||||||||||||||||||| ||| |||||||
Sbjct 14 CTCTCTCTCTCTCTCTCTGC--AGTCTCTGCACACTGCACAAACAC---AAATTTTTACT 68
Query 91 GACAACTGCCTTAAATTGGATCTGTGAGCCCTCCATT-GCTGCTCTCTCTGCTTCTCttt 149
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 69 GACAACTGCCTTAAATTGGATCTGTGAGCCCTCCATTATCTGCTCTCTCTGCTTTTCGTT 128
Query 150 ttttttCTAGTTCAAACTCAACATTTCTTCGATCTCCTTCACCGGATCTCAGATTCTTCA 209
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 129 TTTTTTCTAGTTCAAACTCAACA-CTCTTCGATCTCCATCACCGGATCTCAGATTCTTCA 187
Query 210 GCTGGA-CTTAGATCACCGGTTGTTGTTTTAGGATCTAGCTTC-AATGTTCGATTCTTAG 267
|||||| ||| |||||||||||| ||||||||||||| ||||| |||||||||||| |||
Sbjct 188 GCTGGAGCTT-GATCACCGGTTGGTGTTTTAGGATCTGGCTTCAAATGTTCGATTCGTAG 246
Query 268 TAGCTGTTTTTTGTGATCAATGTTGTTTTTGATTCGATTATTATGAATCCTCTTTGCTGC 327
|| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 247 TA---G--TTTTGTGATCAATGTTG--TTTGATTCGATTGTTATGAATCCTCTTTGCTGC 299
Query 328 ATTGCTCCGGTTTCGATTGATGACCGGACTAATCCCGTCGTAGCGAAATCAT-----C-- 380
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 300 ATTGCTCCGGTTTCGATTGATGACCGGACTAATCCCGTCGTAGCCAAATCATCAGGGCTT 359
Query 381 GAATCATCATTTAGGGCTCGAAGCTATTCCGGTTAGTAAACACGCTTCTAAGCCGTCGTT 440
||||| || || || |||| | || || |||||| ||||||||||||||||||||
Sbjct 360 GAATC-TC-TTCCGGTAACGAA---A-TCTGG-TAGTAACCACGCTTCTAAGCCGTCGTT 412
Query 441 TTCGACTCAGGCGTCTTGGATCAGCCAAGATCAGCTT-GAGAGACTCTCTTCTGAAGTAG 499
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 413 TTCGACTCAGGCGTCTTGGATCAGCCAAGATCAG-TTAGAGAGACTCTCTTCTGAAGTAG 471
Query 500 TAGACGACGTCAATCTCGATGGGAAAGATGCTTCTTCTTCTTCTAATAAAGGATGTTTCT 559
|||| ||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 472 TAGATGACGTGAATCTCGAGGGGAAAGATGCGTCTTCTTCTTCTTCTAAAGGATGTTTCT 531
Query 560 TCTTTGGGAACT-GCGTCGGTGCTGGAGCTGGAGTTGCTGGGATCATGTATAAGTGGGTG 618
|||||||||| | ||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 532 TCTTTGGGAA-TGGCGTCGGTGCTGGAGCTGGTGTCGCTGGGATCATGTATAAATGGGTG 590
Query 619 AACTATGGGAAAGGATGGAGAGCTAGATGGTTTGAGCTGGAGGATGGTGTTTTGTCGTAT 678
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 591 AACTATGGGAAAGGGTGGAGAGCTAGATGGTTTGAGCTGGAGGACGGTGTTTTGTCGTAT 650
Query 679 TATAAGATCCATGGACCTGATAAGATTGTGATGAATCCGTCTAGAGAGAAAGGTGTTAGA 738
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 651 TATAAGATCCATGGACCTGATAAGATTGTGATGAATCCGTCTAGAGATAAGGGTGTTAGG 710
Query 739 GTGATTGGTGAGGAATCTGTGAGGTACATTAGGAAAGCTAGCTGCGGTAGTAGCAACCGA 798
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTGATTGGTGAGGAATCTGTGAGGTACATTAGGAAAGCTAGCTGCGGTAGTAGCAACCGC 770
Query 799 CTTGGAGCTTCTGCTGTAGCAGCTTCAAGGCCTTGTAAACCATTCGGAGAAATACATTTG 858
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CTTGGAGCTTCTGCAGTAGCAGCTTCAAGGCCTTGTAAACCATTCGGAGAAATACATTTG 830
Query 859 AAGGTTTCTTCGATTCGAGCGAGCAAGTCTGATGACAAAAGGCTTGCTATATTTACTGGT 918
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 831 AAGGTTTCTTCGATTCGAGCGAGCAAATCTGATGACAAAAGGCTTGCTATATTTACTGGT 890
Query 919 ACAAAGACTCTTCATTTACGTTGTGTTTCGAAAGAGAATAGAGCGGCTTGGGTAGAAGCT 978
|||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||
Sbjct 891 ACAAAGACTCTTCATTTACGTTGTGTATCGAGAGAGAATAGAGCAGCCTGGGTAGAAGCT 950
Query 979 TTTCAGGTGGCCAAGGATCTTTTTCCTAGAGTGGCCAGTGGCGACATCCTACCCTCAGAA 1038
|| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 951 TTGCAGGTGGCCAAGGATCTTTTTCCTAGAGTGTCCAGCGGCGACATCCTACCCTCAGAA 1010
Query 1039 GATGCGGTTGTTTCTACCGAGAAGTTGCGTGAAAAGTTACTGCAGGAAGGCGTTGGTGAG 1098
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GATGCGGTTGTTTCGACTGAGAAGTTGCGTGAAAAGTTACTGCAGGAAGGCGTTGGTGAG 1070
Query 1099 ACAGTGGTGAAAGATTGTGAAGCCATTATGCTTTCGGAAGTTTCTGTGTTGCAGAACCGG 1158
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1071 ACAGTAGTAAAAGATTGTGAAGCCATTATGCTTTCGGAAGTTTCTGTGCTGCAGAACCGG 1130
Query 1159 TTGAAGGTTCTCACACATAAACACATTATACTACTGGATACACTGAGACAGTTAGAGACT 1218
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTGAAGGTTCTCACACAGAAACACATTATACTACTGGATACACTGAGACAGTTAGAGACC 1190
Query 1219 GAGAAAATAGAGCTGGAAGCTACCGTCGTTGATGAAACAAAGGAGCATGACTCTTGCTGT 1278
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 1191 GAGAAAATAGAGCTGGAAACTACTGTTGTTGATGAAACAAAGGAGCATGACTCTTGCTGT 1250
Query 1279 GGACAGGGAAGACGATTTAGTGATTTCTATTCAGTGATGTCAGAGGTATCTGCAAGCGAT 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GGACAGGGAAGACGATTTAGTGATTTCTATTCAGTGATGTCAGAGGTATCTGCAAGCGAT 1310
Query 1339 TCTGAGGCAGATAATGAAAGTCAAGATGGAGCAGATGTTGAATCTGATGAAGATGATGTA 1398
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1311 TCTGAGGCAGATAATGAAAGTCAAGATGGAGCAGATGTTGAATCTGAGGAAGATGATGTA 1370
Query 1399 CCTTACTTTGATACAAATGATATCCTATCAGCCGAAGCAATGAGAAGTGCTTCTTACCGT 1458
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1371 GCTTTCTTTGATACAAATGATATCCTATCAGCCGAAGCACTGAGAAGTGCTTCTTACCGT 1430
Query 1459 AGCAGAGAAGCTGAAGGAAATGGATCTATCTACGATAAAGACCCCTTCTTTTCAGACCGT 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1431 AGCAGAGAAGCTGAAGGAAATGGATCTATCTACGATAAAGACCCCTTCTTTTCTGACCG- 1489
Query 1519 CT-GCAAATTCCCGCTAGGATCCCGCAGTATCCATATGTCAGAAGAAGGGATAATTTACC 1577
|| |||| |||||||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 1490 CTTGCAAGTTCCCGCTAGAATTCCACAGTATCCATATGTCAGAAGAAGGGATAACCTACC 1549
Query 1578 GGAGCCAAAGGAGAAGGAAAAGCCAGTTGGATTATGGTCAATCATCAAAGAAAACATTGG 1637
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GGAACCAAAGGAGAAGGAAAAGCCAGTTGGATTATGGTCAATCATCAAAGAAAACATTGG 1609
Query 1638 CAAAGACTTGTCTGGAGTTTGTCTCCCTGTATATTTTAATGAGCCTCTCTCTTCTCTGCA 1697
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1610 CAAAGACTTGTCTGGAGTTTGTCTCCCCGTATATTTTAATGAGCCTCTCTCTTCTCTGCA 1669
Query 1698 GAAGTGCTTTGAAGATTTGGAGTACTCATACTTGATAGACAGAGCACTTGAGTGGGGGAA 1757
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 GAAGTGCTTTGAGGATTTGGAGTACTCATACTTGATAGACAGAGCACTTGAGTGGGGGAA 1729
Query 1758 GCAGG 1762
|||||
Sbjct 1730 GCAGG 1734
Score = 1954 bits (1058), Expect = 0.0
Identities = 1137/1174 (97%), Gaps = 10/1174 (1%)
Strand=Plus/Plus
Query 1825 GGTAATGAATTGATGAGGATTCTAAACATAGCAGCGTTTGCTGTATCTGGCTATGCGTCC 1884
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1734 GGTAATGAATTGATGAGGATTCTAAACATAGCAGCGTTTGCCGTATCTGGCTATGCGTCC 1793
Query 1885 ACGGAAGGCAGGCAATGCAAACCTTTCAACCCTCTACTTGGTGAGACCTATGAAGCTGAT 1944
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1794 ACGGAAGGCAGGCAATGCAAACCTTTCAATCCTCTACTTGGGGAGACCTATGAAGCTGAG 1853
Query 1945 TATCCAGATAAAGGACTTCGTTTCTTCTCTGAGAAGGTGAGTCATCATCCTATGATTGTT 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TATCCAGATAAAGGACTTCGTTTCTTCTCTGAGAAGGTGAGTCATCATCCTATGATTGTT 1913
Query 2005 GCTTGCCATTGTGAGGGACAAGGGTGGAATTTCTGGGGAGACTCAAATATCAAAGGAAAA 2064
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1914 GCTTGCCATTGTGAGGGACAAGGTTGGAATTTCTGGGGAGACTCAAATATCAAAGGAAAA 1973
Query 2065 TTTTGGGGACGGTCAATCCAGCTTGACCCAGTGGGTGTCTTAACATTAAAATTTGATGAT 2124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1974 TTTTGGGGACGGTCAATCCAGCTTGACCCAGTGGGTGTCTTGACATTAAAATTTGATGAT 2033
Query 2125 GGTGAGATATATCAATGGAGCAAGGTTACCACTTCTATATACAACATCATCCTTGGTAAA 2184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2034 GGTGAGATATATCAATGGAGCAAGGTTACCACTTCCATATACAACATCATCCTTGGTAAA 2093
Query 2185 CTTTACTGCGACCATTATGGAACCATGCGTATCAAAGGCGGTAGCAATTATTCCTGCCGG 2244
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2094 CTTTACTGCGATCATTATGGAACCATGCGCATCAAAGGCGGTAGCAATTATTCCTGCCGG 2153
Query 2245 TTGAAGTTCAAGGAGCAGTCAGTCATAGATCGAAACCCTCGTCAGGTTCATGGGTTTGTG 2304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TTGAAGTTCAAGGAGCAGTCAGTCATAGATCGAAACCCTCGTCAGGTTCATGGGTTTGTG 2213
Query 2305 CAAGACAACAGAACCGGGGAGAAAGTAGCTATACTGATAGGCAAATGGGATGAAGCAATG 2364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 CAAGACAACAGAACCGGGGAGAAAGTAGCTATACTGATAGGCAAATGGGATGAAGCAATG 2273
Query 2365 TACTATGTATTGGGAGATCCGACAACAAAACCAAAGGGGTATGATCCAATGACAGAAGCA 2424
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2274 TACTATGTACTGGGAGATCCGACAACAAAACCAAAGGGATATGATCCAATGACAGAAGCA 2333
Query 2425 GTGTTACTGTGGGAAAGAGACAAATCTCCTACAAAAACAAGATACAATCTCTCCCCTTTT 2484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 GTGTTACTGTGGGAAAGAGACAAATCTCCTACAAAAACAAGATACAATCTCTCCCCTTTT 2393
Query 2485 GCGATCTCTCTCAATGAGATAACTCCTGGGATGATAGACAAATTGCCTCCAACAGATTCA 2544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 GCGATCTCTCTCAATGAGATAACTCCTGGGATGATAGACAAATTGCCTCCAACAGATTCA 2453
Query 2545 AGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAG 2604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 AGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAG 2513
Query 2605 AAACTGAGACTTGAACAGTTACAGAGACAGGCAAGGAGGCTGCAGGAGAAAGGATGGAAA 2664
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 AAACTGAGACTTGAACAGCTACAGAGACAGGCAAGGAGGCTGCAGGAGAAAGGATGGAAA 2573
Query 2665 CCAAGATGGTTTGAAAAAGATGAAGAAGGAAATTATCGGTATCTAGGAGGTTACTGGGAA 2724
|| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2574 CCGAGATGGTTCGAAAAGGATGAAGAAGGGAATTATCGGTATCTAGGAGGTTACTGGGAA 2633
Query 2725 GCAAGAGAGAAGAAAGATTGGGATAGAATCACTGACATTTTCAAGAAGCAACAACAGCGT 2784
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2634 GCAAGAGAGAAGAAAGATTGGGATAGAATCACTGACATTTTCAAGAAGCAGCAACAGCGG 2693
Query 2785 AACTCGCTCTCATCTTCTTCATCGTCTACCTTTCTTTAATCATCAATTATCCCATGtttt 2844
| | ||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2694 --C-C-CTC--ATCTTCTTCATCGTCTACCTTTCTTTAATCATCAATCATTCCATGTTTT 2747
Query 2845 ttttttGTGCTTTGATAATTTAATACATATAGAAAGAATCTTCACCATTCCCTCATTGTG 2904
|||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2748 TTTTTT-TACTTTGATAATATAATACATATAGAAAGA-TCTTCACCATTCCCTCATTGTG 2805
Query 2905 CTTCTGTGAAAATTTGGCCGGAACCTTTGTTGGTGTGCGTGT--ATCTGTAGATGTCAAA 2962
|||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
Sbjct 2806 CTTCTGTGAAAATTTGGCCGGAACCTATGTTGGTGTGTGTGTTCATCTGTAGATGTCATA 2865
Query 2963 GAGACTAATTATTGGAAATGATGAATTTTTCCTT 2996
|||||| ||||||||||||||||| |||||||||
Sbjct 2866 GAGACTTATTATTGGAAATGATGATTTTTTCCTT 2899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117698857050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5