BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13180.1 Length=1915 Score E Sequences producing significant alignments: (Bits) Value Ahg471471 jgi|Araly1|471471|fgenesh2_kg.1__1425__AT1G13180.1 2656 0.0 > Ahg471471 jgi|Araly1|471471|fgenesh2_kg.1__1425__AT1G13180.1 Length=1837 Score = 2656 bits (1438), Expect = 0.0 Identities = 1625/1710 (95%), Gaps = 33/1710 (2%) Strand=Plus/Plus Query 1 ATCGGAAAAATCTCACACGATAAAGTACCAGTCGACGACGGCGACTTTCTCTATGATCTG 60 |||||||||||||| |||||| |||||| | ||||||||||||||||| ||||||||||| Sbjct 1 ATCGGAAAAATCTCCCACGATGAAGTACAAATCGACGACGGCGACTTTGTCTATGATCTG 60 Query 61 ACCGTTTCGCTGAATCTCACGTGAATCTCTGATTTTCCGGGAAAATCAATTTTCTCTCAT 120 | | |||| ||||| ||||| |||||||| |||||||||||||||||| |||| | | Sbjct 61 A--G-TTCGTTGAATTTCACGGGAATCTCTAATTTTCCGGGAAAATCAA--TTCTGT--T 113 Query 121 TGTCTCTCTCCC-TACATTGTTTCTCATAGCCTAC----GAGAAATTACGTGGTAGCTTG 175 | |||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 114 T-TCTCTC-CCCTTACATTGTTTCTCATAGCCTACGAGTGAGAAATTACGCGGTAGCTTG 171 Query 176 TCGGAAACTCAACTTCCGTTGACGGAAGGCGCGAGAAAGAAGCAAGCTTAGGTTCGATCG 235 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 172 TCGGAAACTCAACTTCCGTTGACGGAAGGTGCGAGAAATAAGCAAGCTTAGGTTCGATCG 231 Query 236 GAAAATTCTAGGGTTCTCTAGTGTTTAAACGGTAGAGATAATCGATCTCTAATCGGATAC 295 | |||||| |||||||||| || |||||||||||||||||| | || |||||| Sbjct 232 G--------AGGGTTTTCTAGTGTTTTAAGGGTAGAGATAATCGATCTTTGATTGGATAC 283 Query 296 TGTTTTGGATCTCCA-T------T-C-ACACCCTCTGGTGAGCTGATTTTGCTTTAGAGA 346 ||||||||||||||| | | | ||||||||||||| ||| |||||||||||||| Sbjct 284 TGTTTTGGATCTCCAGTCGCAGATCCTTCACCCTCTGGTGATCTGCTTTTGCTTTAGAGA 343 Query 347 TCGCCGGCTTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTATTGTCATCGACAATG 406 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 344 TCGCCGGCGTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTGTTGTCATCGACAATG 403 Query 407 GAACTGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTA-TCTTACCA 465 |||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||| Sbjct 404 GAACCGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGCTTTATTC-TACCA 462 Query 466 ACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 525 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 ACAGTAGTTGCAGTTAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 522 Query 526 TGGCAAACTCAGCACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATTGGAGATGAA 585 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 523 TGGCAAACTCAACACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATCGGAGATGAA 582 Query 586 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 642 Query 646 CAAGTTGAGGATTGGGATGCTATGGAGAGATATTGGCAGCAGTGTATATTTAACTATTTG 705 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 643 CAAGTTGAGGATTGGGATGCTATGGAAAGATATTGGCAGCAGTGTATATTTAACTATTTG 702 Query 706 AGATGTGATCCTGAGGATCATTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 765 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 703 AGATGTGATCCAGAGGATCACTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 762 Query 766 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTTAATGTTCCTGGGCTTTACATT 825 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 763 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTCAATGTTCCCGGGCTTTACATT 822 Query 826 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGCTACACAACATCAAAGTGTGAGATGACA 885 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 823 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGGTACACAACATCAAAGTGTGAGATGACA 882 Query 886 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 945 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 942 Query 946 GTCATCGGGAGCTGTATCAAATCGATTCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1005 || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 943 GTTATTGGGAGCTGTATCAAATCGATCCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1002 Query 1006 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1003 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1062 Query 1066 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1122 Query 1126 CATGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACTGGT 1185 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1123 CACGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACAGGT 1182 Query 1186 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTGTTCTTTAAT 1245 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1183 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTATTCTTTAAT 1242 Query 1246 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1302 Query 1306 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1303 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1362 Query 1366 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGGGACCTCAAGAAGATTGTTGAT 1425 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1363 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGAGATCTCAAGAAGATTGTTGAT 1422 Query 1426 GCTCGTGTTCTTGCTAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1485 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1423 GCTCGTGTTCTTGCAAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1482 Query 1486 GTTAATGTCGTGAGCCATCCTGTCCAGAGGTTTGCAGTTTGGTTTGGAGGCTCTGTGCTT 1545 |||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||| Sbjct 1483 GTTAATGTCGTGAGCCATCCAGTCCAGCGGTTTGCAGTTTGGTTTGGAGGCTCAGTCCTT 1542 Query 1546 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1543 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1602 Query 1606 GCAAGCATATGCCGCACGAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1665 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1603 GCAGGCATATGCCGCACAAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1662 Query 1666 AATTCACCAGCAGATTCTGTGAATGTTTGT 1695 |||||| |||||||| |||||||||||||| Sbjct 1663 AATTCATCAGCAGATCCTGTGAATGTTTGT 1692 Score = 115 bits (62), Expect = 1e-24 Identities = 67/69 (97%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1723 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGTCATATTATTAT 1782 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1692 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGGCATATTATT-T 1750 Query 1783 TCAGACAAA 1791 ||||||||| Sbjct 1751 TCAGACAAA 1759 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71952472805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5