BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13180.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471471 jgi|Araly1|471471|fgenesh2_kg.1__1425__AT1G13180.1 2656 0.0
> Ahg471471 jgi|Araly1|471471|fgenesh2_kg.1__1425__AT1G13180.1
Length=1837
Score = 2656 bits (1438), Expect = 0.0
Identities = 1625/1710 (95%), Gaps = 33/1710 (2%)
Strand=Plus/Plus
Query 1 ATCGGAAAAATCTCACACGATAAAGTACCAGTCGACGACGGCGACTTTCTCTATGATCTG 60
|||||||||||||| |||||| |||||| | ||||||||||||||||| |||||||||||
Sbjct 1 ATCGGAAAAATCTCCCACGATGAAGTACAAATCGACGACGGCGACTTTGTCTATGATCTG 60
Query 61 ACCGTTTCGCTGAATCTCACGTGAATCTCTGATTTTCCGGGAAAATCAATTTTCTCTCAT 120
| | |||| ||||| ||||| |||||||| |||||||||||||||||| |||| | |
Sbjct 61 A--G-TTCGTTGAATTTCACGGGAATCTCTAATTTTCCGGGAAAATCAA--TTCTGT--T 113
Query 121 TGTCTCTCTCCC-TACATTGTTTCTCATAGCCTAC----GAGAAATTACGTGGTAGCTTG 175
| |||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 114 T-TCTCTC-CCCTTACATTGTTTCTCATAGCCTACGAGTGAGAAATTACGCGGTAGCTTG 171
Query 176 TCGGAAACTCAACTTCCGTTGACGGAAGGCGCGAGAAAGAAGCAAGCTTAGGTTCGATCG 235
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 172 TCGGAAACTCAACTTCCGTTGACGGAAGGTGCGAGAAATAAGCAAGCTTAGGTTCGATCG 231
Query 236 GAAAATTCTAGGGTTCTCTAGTGTTTAAACGGTAGAGATAATCGATCTCTAATCGGATAC 295
| |||||| |||||||||| || |||||||||||||||||| | || ||||||
Sbjct 232 G--------AGGGTTTTCTAGTGTTTTAAGGGTAGAGATAATCGATCTTTGATTGGATAC 283
Query 296 TGTTTTGGATCTCCA-T------T-C-ACACCCTCTGGTGAGCTGATTTTGCTTTAGAGA 346
||||||||||||||| | | | ||||||||||||| ||| ||||||||||||||
Sbjct 284 TGTTTTGGATCTCCAGTCGCAGATCCTTCACCCTCTGGTGATCTGCTTTTGCTTTAGAGA 343
Query 347 TCGCCGGCTTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTATTGTCATCGACAATG 406
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 344 TCGCCGGCGTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTGTTGTCATCGACAATG 403
Query 407 GAACTGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTA-TCTTACCA 465
|||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 404 GAACCGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGCTTTATTC-TACCA 462
Query 466 ACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 525
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ACAGTAGTTGCAGTTAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 522
Query 526 TGGCAAACTCAGCACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATTGGAGATGAA 585
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 523 TGGCAAACTCAACACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATCGGAGATGAA 582
Query 586 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 642
Query 646 CAAGTTGAGGATTGGGATGCTATGGAGAGATATTGGCAGCAGTGTATATTTAACTATTTG 705
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 643 CAAGTTGAGGATTGGGATGCTATGGAAAGATATTGGCAGCAGTGTATATTTAACTATTTG 702
Query 706 AGATGTGATCCTGAGGATCATTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 765
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGATGTGATCCAGAGGATCACTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 762
Query 766 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTTAATGTTCCTGGGCTTTACATT 825
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 763 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTCAATGTTCCCGGGCTTTACATT 822
Query 826 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGCTACACAACATCAAAGTGTGAGATGACA 885
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 823 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGGTACACAACATCAAAGTGTGAGATGACA 882
Query 886 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 942
Query 946 GTCATCGGGAGCTGTATCAAATCGATTCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1005
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 943 GTTATTGGGAGCTGTATCAAATCGATCCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1002
Query 1006 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1062
Query 1066 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1122
Query 1126 CATGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACTGGT 1185
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1123 CACGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACAGGT 1182
Query 1186 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTGTTCTTTAAT 1245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1183 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTATTCTTTAAT 1242
Query 1246 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1302
Query 1306 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1362
Query 1366 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGGGACCTCAAGAAGATTGTTGAT 1425
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1363 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGAGATCTCAAGAAGATTGTTGAT 1422
Query 1426 GCTCGTGTTCTTGCTAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1485
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GCTCGTGTTCTTGCAAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1482
Query 1486 GTTAATGTCGTGAGCCATCCTGTCCAGAGGTTTGCAGTTTGGTTTGGAGGCTCTGTGCTT 1545
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||
Sbjct 1483 GTTAATGTCGTGAGCCATCCAGTCCAGCGGTTTGCAGTTTGGTTTGGAGGCTCAGTCCTT 1542
Query 1546 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1602
Query 1606 GCAAGCATATGCCGCACGAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1665
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 GCAGGCATATGCCGCACAAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1662
Query 1666 AATTCACCAGCAGATTCTGTGAATGTTTGT 1695
|||||| |||||||| ||||||||||||||
Sbjct 1663 AATTCATCAGCAGATCCTGTGAATGTTTGT 1692
Score = 115 bits (62), Expect = 1e-24
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1723 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGTCATATTATTAT 1782
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1692 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGGCATATTATT-T 1750
Query 1783 TCAGACAAA 1791
|||||||||
Sbjct 1751 TCAGACAAA 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5