BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13195.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471474 jgi|Araly1|471474|fgenesh2_kg.1__1428__AT1G13195.1 1919 0.0
Ahg920122 jgi|Araly1|920122|scaffold_101403.1 150 2e-35
> Ahg471474 jgi|Araly1|471474|fgenesh2_kg.1__1428__AT1G13195.1
Length=1225
Score = 1919 bits (1039), Expect = 0.0
Identities = 1171/1232 (95%), Gaps = 20/1232 (2%)
Strand=Plus/Plus
Query 1 GAAACAAAGAATCAAAAAGGCAAAAAGCAAagagagagagagagagaagaagaagtgaga 60
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 GAAACAAAGAATCAAAAAGGCAAAAAGAAAAGAGAGAGAGAGA-AGAAGAAGAAGTGAGA 59
Query 61 CTTGTGTTCTTACGGTGTTTATAGCTTCTTTGTTTTGTCTTTTAGGTTCTTGCCTTTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTGTGTTCTTACGGTGTTTATAGCTTCTTTGTTTTGTCTTTTAGGTTCTTGCCTTTTTC 119
Query 121 CGATCAATCAGACCAATC-CCTCCTTCACTTTTAGCATCTTATTCTCTTTCGTTCTTC-T 178
|||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 120 CGATCAATCAGACCAATCTCC-CCTTCACTTTTAGCATCTTATTCTCTTTCGTT-GTCTT 177
Query 179 TATATTTCTGGGAATTTTCTTCAATCGATTCCTCTTTGTTGTAATCTCACAATTAGAGAG 238
||||||||||||||||||||||||| |||||||||||| ||||| |||||| | | ||
Sbjct 178 TATATTTCTGGGAATTTTCTTCAATTGATTCCTCTTTGCTGTAA--TCACAA--ATACAG 233
Query 239 AGAGATATGTATAATCAGTTGGCGATATCTTCGTCTTC-T--TCA------TCTTCTTCG 289
|||||||||||||||||||||||||||||||| ||||| | ||| |||||||||
Sbjct 234 AGAGATATGTATAATCAGTTGGCGATATCTTCTTCTTCTTCATCATCTTCTTCTTCTTCG 293
Query 290 TACTATGAATCTTTGAAGGTTTTGGAAGCTGATGTTCAACACGCTAATTCTTTGGCAGAA 349
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TACTATGAATCTTTGAAGATTTTGGAAGCTGATGTTCAACACGCTAATTCTTTGGCAGAA 353
Query 350 GCAATTCCAATGGGGAAGAACAATGTGCGGCTTCAGATGAAACTGGTTCATAGTAACTTT 409
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 354 GCAATTCCAATGGGGAAGAACAATGTGCGGCTTCAGATGAAGTTGGTTCATAGTAACTTT 413
Query 410 GCTTCATTATTACTCTTCTTGCTCCGGTGGATTGATCTTTCTTCCTCATGTCTTATTCCT 469
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 414 GCTTCATTATTACTCATCTTGCTTCGGTGGATTGATCTTTCTTGCTCATGTCTTATTCCT 473
Query 470 CGCTACTTAAACCTCTTTCATGTTCTTGTCTACAAGGTCCAGTCTGATGGACAACCTAAG 529
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGCTACTTAAACCTTTTTCATGTTCTTGTCTACAAGGTCCAGTCTGATGGACAACCTAAG 533
Query 530 CTTACCACGCACGGAAGGAAAGCAACGATTAGTGAGTTCTATGGTGTGATACTACCATCA 589
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 534 CTTACCACACACGGAAGGAAAGCAACGATTAGTGAGTTCTACGGTGTGATACTACCATCA 593
Query 590 CTGCAGCTATTACACAGCAACTTAGATGAGTTGGAAACCACAGACATCGGGTTTGACCTT 649
|| |||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 594 CTTCAGCTATTGCACAGCAACTTAGACGAGTTGGTAACCGCAGACATCGGGTTTGACCTT 653
Query 650 AAAAGACTCAGTAAGAAGATAACAAAAGAGGCTCGTAGTAGTAGATTCAGCAATGCCGGT 709
||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 654 AAAAGACTCAGCAAGAAGATAACAACAGAGTCTCGCAGTAGTAGATTCAGCAATGCCGGG 713
Query 710 TTAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCT 769
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 714 TTAGAGCGAGAAGAAGAATGCGGAATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCT 773
Query 770 AATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGGAACTTGAAGTCTCAGTCA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 AATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGGAACTTGAAGTCCCAGTCA 833
Query 830 TGCCCGTTTTGTCGAGGCAGCATGAAGAGAGTGAACTCAGAGGACTTGTGGGTGCTTGCG 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGCCCGTTTTGTCGAGGCAGCATGAAGAGAGTGAACTCAGAGGACTTGTGGGTGCTTGCA 893
Query 890 GGTGATAACGATGTGGTGGATACAAGGACGGCTTCAAGGGAAGATTTGTTCAGATTCTAT 949
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGTGATAACGACGTGGTGGATACAAGGACGGCTTCAAGGGAAGATTTGTTCAGATTCTAT 953
Query 950 CTCTACATCAATAGCCTTCCCAAGGATTACCCAGAAGCTCTCTTTGTGGTTTACTATGAG 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 954 CTCTACATCAATAGCCTTCCCAAGGATTACCCAGAAGCTCTCTTTGTGGTTTACTACGAG 1013
Query 1010 TACTCAAATCTGCTATAGAATCTGGACAAACAAAACTTTGTACAGATTTTTAGATGGTAA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TACTCAAATCTGCTATAGAATCTGGACAAACAAAACTTTGTACAGATTTTTAGATGGTAA 1073
Query 1070 ATGTATTGTATAGAATGTAAAACTGTGTTAAGGCTTTTGGATGATATGATGCAAATGCCA 1129
||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 1074 ATGTAATGTATAGAATGTAAAACTGTGGTAAGGCTTTTGGATGATTTGATGCGAATGCCA 1133
Query 1130 AAGCTCTCAGTTTTTACATACTTAATAATTGTCAAATTGCGAGaaaa-aaaaaa-aGCTT 1187
|||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||
Sbjct 1134 AAGCTCTCAGTTTTTACATACTTAATAATTCTGAAATTGCGAGAAAAGAAAAAATAGCTT 1193
Query 1188 GAATGCAGCAAAGAATAAAGATCTCATTTCAT 1219
|||||||||||| ||||||| |||| ||||||
Sbjct 1194 GAATGCAGCAAATAATAAAGGTCTCCTTTCAT 1225
> Ahg920122 jgi|Araly1|920122|scaffold_101403.1
Length=841
Score = 150 bits (81), Expect = 2e-35
Identities = 108/119 (91%), Gaps = 9/119 (8%)
Strand=Plus/Plus
Query 233 AGAGAGAGAGATATGTATAATCAGTTGGCGATATCTTCGTCTTC-T--TCA------TCT 283
|||||||||||||||||||||||||||||||||||||| ||||| | ||| |||
Sbjct 9 AGAGAGAGAGATATGTATAATCAGTTGGCGATATCTTCTTCTTCATCATCATCTTCTTCT 68
Query 284 TCTTCGTACTATGAATCTTTGAAGGTTTTGGAAGCTGATGTTCAACACGCTAATTCTTT 342
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 69 TCTTCGTACTATGAATCTTTGAAGATTTTGGAAGCTGATGTTCAACACGCTAATTCTTT 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5