BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13200.1 Length=1308 Score E Sequences producing significant alignments: (Bits) Value Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 1448 0.0 Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 976 0.0 > Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 Length=1266 Score = 1448 bits (784), Expect = 0.0 Identities = 1004/1107 (91%), Gaps = 28/1107 (3%) Strand=Plus/Plus Query 1 ATGAAGGACGCAGAGAAGCGAGAGGTGATTGCATCA---TCATCA-TTACaaa--gaaag 54 |||| ||| |||||| ||| || ||| || |||||| |||||| | | ||| ||||| Sbjct 1 ATGATGGAGGCAGAGCAGCAAGTGGTAATGGCATCATCTTCATCACTAAGAAAGCGAAAG 60 Query 55 agaa-acag-a-g-gaagaagactaaggaaaagaagaagaagaaacgagaagCGAGTACT 110 |||| | || | | |||||| | |||||| |||||||||||||||||||||||||||| Sbjct 61 AGAAGA-AGAATGAGAAGAATAATAAGGAGAAGAAGAAGAAGAAACGAGAAGCGAGTA-- 117 Query 111 AATGGTTCCATCATCATTACCAAACGACGTGC-TAGAGGAGATCTTT-TTAAGATTTCCG 168 || || |||||||||| ||||||||||| | | |||| || || ||| |||||||||||| Sbjct 118 AA-GGCTCCATCATCACTACCAAACGACAT-CGTAGAAGAAAT-TTTCTTAAGATTTCCG 174 Query 169 GTTAAAGCCCTAATCCGACTCAAGTCTCTCTCGAAACAATGGAGATCGACGATCGAATCT 228 || ||||||||||||||||||||||||||||| ||| | |||| ||| |||||||| ||| Sbjct 175 GTGAAAGCCCTAATCCGACTCAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCT 234 Query 229 CGCAGTTTTGAAGAGAGACACTTGACGATCGCTAAGAAAGCCTTCGTGGATCATCCCAAG 288 |||||||||||||||||| |||||| | |||||||| |||||| | |||||||||||||| Sbjct 235 CGCAGTTTTGAAGAGAGATACTTGAAGCTCGCTAAGCAAGCCTGCATGGATCATCCCAAG 294 Query 289 GTCATGCTCGT-AGGAGAAGAAGATCCCATAAGAGGAACCGGGAT-TCGTCCAG-ACACT 345 |||||| || | | |||||||||||||||||||| || |||| | |||||| | ||| Sbjct 295 GTCATGGTCATCA-CAGAAGAAGATCCCATAAGAGAAATCGGG-TATCGTCC-GTTCACA 351 Query 346 GACATTGGTTTTAGG-TTATTCTGCTTGGAATCGGCTTCTCTTCTATCCTTTACTCGTCT 404 ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| Sbjct 352 GACATTGGTTTTAGGACGA-TCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCT 410 Query 405 CAATTTCCCTCAAGGGTTCTTCAACTGGATCTACATATCTGAAAGCTGTGATGGCCTTTT 464 |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| Sbjct 411 CAATTTCCCTCAAGGGTTCTTCCACTGGATCAAAATCTCTGAAAGCTGTGATGGCCTTTT 470 Query 465 CTGCATCCATTCCCCAAAATCACATTCCGTATATGTAGTGAATCCGGCTACACGGTGGCT 524 ||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 471 CTGTATCCATTCACCAAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGCT 530 Query 525 CCGCCTACTTCCTCCGGCAGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACTGAACG 584 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 531 CCGCCTACTTCCTCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACGGAGCG 590 Query 585 TGAGTGGAATGTAGTGATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTA 644 |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 TGAGTGGAATATAGAAATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTA 650 Query 645 CAAATTAGTGTGGTTGTACAATTGTGATAAGTACATTGTTGATGCGTCGAGTCCAAACGT 704 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 651 CAAATTAGTGTGGTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGT 710 Query 705 GGGAGTCACAAAGTGCGAGATTTTTGACTTTAGGAAAAATGCTTGGAGGTACTTGGCTTG 764 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 711 GGGAGTCACAAAGTGCGAGGTTTTTGACTTTAGGGTAAATGCTTGGAGGTACTTGGCTTG 770 Query 765 CACTCCAAGTCATCAGATATTCTATTACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTA 824 |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 771 CACTCCAAGTCATCGGATATTTTATGACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTA 830 Query 825 TTGGTTTACAGAACCATATAATGAAAGAATCGAAGTAGTGGCTTTTGATATTCAGACCGA 884 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 831 TTGGTTTACGGAACCATATAATGAAAGAATCGAAGTAGTGGCTTTTGATATTCATACCGA 890 Query 885 AACATTCCGGTTGCTGCCTAAGATTAATCCGGCTATTGCTGGTTCAGATCCTCACCATAT 944 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 891 AACATTCCGGTTGCTGCCTAAGATAAATCCGGCTATTGCTGGTTCAGATCCTCACCATAT 950 Query 945 TGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGGGAGAAA-GATACTATGA 1003 |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| Sbjct 951 TGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGA-AAACGATACTATGA 1009 Query 1004 TCCAAGATATTTGGAGGTTGAAACCATCAGAAGACACATGGGAAAAGATTTTTAGCATAG 1063 ||||||||||||||||| | ||||||||||||||||||||||| |||||||| | ||||| Sbjct 1010 TCCAAGATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAGATTTTCACCATAG 1069 Query 1064 ACTTGGTTTCCTGTCCTTCTTCTCGGA 1090 | ||| |||| ||| |||||||||||| Sbjct 1070 ATTTGCTTTCTTGTTCTTCTTCTCGGA 1096 > Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 Length=1224 Score = 976 bits (528), Expect = 0.0 Identities = 967/1173 (82%), Gaps = 53/1173 (5%) Strand=Plus/Plus Query 78 gaa-aagaagaagaagaaacgagaagCGAGTACTAATGGTTCCATCATCAT-TACCAAAC 135 ||| ||||||||||||||||||||||| || | || | ||||||||| | | |||||| Sbjct 30 GAAGAAGAAGAAGAAGAAACGAGAAGCCAG---TGATTGCTCCATCATC-TCTGCCAAAC 85 Query 136 GACGTGC-TAGAGGAGATCTTTTTAAGATTTCCGGTTAAAGCCCTAATCCGACTCAAGTC 194 ||||| | | ||||| ||||| || ||||||| || ||||| ||| |||| | | Sbjct 86 GACGT-CGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACTATTCCG-----A--C 137 Query 195 TCTCTCGAAACAATGGAGATCGACGATCGAATCTCGCAGT--TTTGAAGAGAGACACTTG 252 |||||||||||||||||||||||||||||| ||| || | || ||||||||||||||| Sbjct 138 TCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGAGAGACACTTG 195 Query 253 ACGATCGCTAAG-AAAGCCTTCGTGGATCATCCCAAG-GTCATGCTCGTAGGA--GAAGA 308 | |||||| || || || | |||| |||| || || || ||| | | | | ||| | Sbjct 196 AGGATCGCCGAGCAATTCCGT-GTGGGTCAT-CCTAGAGTTATGGT-G-ATCACTGAAAA 251 Query 309 AGATCCCATAAGAGGAA--CCGGGA-TTCGTCCAGACACTGACATTGGTTTTAGGTTATT 365 ||||||| ||| | || || | |||||||||||| |||||||||||||||| ||| Sbjct 252 AGATCCCCTAAAACTAATGCCTCTAGCTCGTCCAGACACAGACATTGGTTTTAGGTCATT 311 Query 366 CTGCTTGGAATCGGCTTCTCTTCTATCCTTTACTCGTCTCAATTTCCCTCAAGGGTTCTT 425 |||||||||||||| |||||||||||||||||||| ||||||||| |||||| | ||| Sbjct 312 CTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATTTTCCTCAAAGTTTCGC 371 Query 426 CAACTGGATCTACATATCTGAAAGCTGTGATGGCCTTTTCTGCATCCATTCCCCAAAATC 485 | ||| ||||| | |||| | | || |||||||||||||||||||||||||| ||||| Sbjct 372 CCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGCATCCATTCCCCGAAATC 431 Query 486 ACATTCCGTATATGTAGTGAATCCGGCTACACGGTGGCTCCGCCTACTTCCTCCGGC-AG 544 | |||||||||| || |||||||| |||| |||| | || | ||||||||| || | Sbjct 432 GGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGGCAACTTCCTCCAGCTA- 490 Query 545 GGTTTCAGATTTTGATCCACAAGTTTAACCCCAC-TGAACGTGAGTGGAATGTAGTGATG 603 ||||||| |||||||| |||||||||||||| || | | | || ||| | ||| ||| Sbjct 491 GGTTTCAAATTTTGATGCACAAGTTTAACCCTACTTTTA-GAGATTGG-A--TAGACATG 546 Query 604 AAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTGGTTGTAC 663 | ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 547 GAGTCAGTCTTTCATCTAGCCTTCGTGAAGGCCACTAATTACAAATTAGTGTGGTTGTAT 606 Query 664 AATTGTGATAAGTACATTGTTGATGCGTCGAGTCCAAACGTGGGAGTCACAAAGTGCGAG 723 |||| ||||||||||| || |||||| ||||||||||||| |||||| || ||||||||| Sbjct 607 AATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACGAGGGAGTTACCAAGTGCGAG 666 Query 724 ATTTTTGACTTTAGGAAAAATGCTTGGAGGTACTTGGCTTGCACTCCAAGTCATCAGATA 783 |||||||||| ||| ||| |||||||||||||||||||||||||||||| ||| |||| Sbjct 667 GTTTTTGACTTCAGGGCAAACGCTTGGAGGTACTTGGCTTGCACTCCAAGTTATCGGATA 726 Query 784 T-TCTATTACCAAA-AGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTACAGAACCAT 841 | || || | |||| | ||||||| |||||||||||| || |||||||| || || |||| Sbjct 727 TATC-ATGATCAAATA-CCAGCATGTGCAAACGGGTCAGTATATTGGTTCACGGAGCCAT 784 Query 842 ATAATGA-AAGAATCGAAGTAGTGGCTTTTGATATTCAGACCGAAACATTCCGGTTGCTG 900 ||||||| || ||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 785 ATAATGATAA-AATCGAAGTAGTGGCTTTTGATATTCATACCGAATCATTCCGGTTGCTG 843 Query 901 CCTAAGATTAATCCGGCTATTGCTGGTTCAGATCCTCAC-CATATTGACATGTGCACTCT 959 ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 844 CCTAAGATTAAACCGGCTATTGCTGGTTCAGATCCG-AGGCATATTGACATGTGCACTCT 902 Query 960 GGATAATAGTTTGTGTATGTCGAAAAGGGAGAAA-G-ATAC-TATGATCCAAGATATTTG 1016 ||||||| ||||||| ||||||||||| |||| | |||| | || ||||||| ||||| Sbjct 903 GGATAATGGTTTGTGCATGTCGAAAAG--AGAACCGGATACGT-TGGTCCAAGAGATTTG 959 Query 1017 GAGGTTGAAACCATCAGAAGACACATGGGAAAAGATTTTTAGCATAGACTTGGTTTCCTG 1076 |||||||||| ||||||||||| |||||| ||||||| || ||| || ||| |||| || Sbjct 960 GAGGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATACCATTGATTTGCTTTCTTG 1019 Query 1077 TCCTTCTTCTCGGACTGAGAAGCGTGATCAATTTGATTGGAGCAAGAAGGATAGGGTTGA 1136 | ||||||| |||| | || || ||| ||||||| ||||||| ||||||| |||||| Sbjct 1020 TTCTTCTTCCCGGAATCAGTTTCGCGATGAATTTGACTGGAGCAGGAAGGATTTGGTTGA 1079 Query 1137 GCCAGCCACACCCGTCGCGGTTTGTAAGAATAAGAAGATCCTT-CTCTCACATCGCTATT 1195 ||| ||||||| || ||||| || ||||| ||||||||| || |||||||||||||||| Sbjct 1080 TCCATCCACACCGGTGGCGGTATGCAAGAACAAGAAGATC-TTGCTCTCACATCGCTATT 1138 Query 1196 CCCGAGGTTTGGTAAAGTACGATCCCCTAACAA 1228 |||| ||| ||||||| || ||||||||||||| Sbjct 1139 CCCGCGGTCTGGTAAAATATGATCCCCTAACAA 1171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48911702511 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5