BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13200.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 1448 0.0
Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 976 0.0
> Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1
Length=1266
Score = 1448 bits (784), Expect = 0.0
Identities = 1004/1107 (91%), Gaps = 28/1107 (3%)
Strand=Plus/Plus
Query 1 ATGAAGGACGCAGAGAAGCGAGAGGTGATTGCATCA---TCATCA-TTACaaa--gaaag 54
|||| ||| |||||| ||| || ||| || |||||| |||||| | | ||| |||||
Sbjct 1 ATGATGGAGGCAGAGCAGCAAGTGGTAATGGCATCATCTTCATCACTAAGAAAGCGAAAG 60
Query 55 agaa-acag-a-g-gaagaagactaaggaaaagaagaagaagaaacgagaagCGAGTACT 110
|||| | || | | |||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 61 AGAAGA-AGAATGAGAAGAATAATAAGGAGAAGAAGAAGAAGAAACGAGAAGCGAGTA-- 117
Query 111 AATGGTTCCATCATCATTACCAAACGACGTGC-TAGAGGAGATCTTT-TTAAGATTTCCG 168
|| || |||||||||| ||||||||||| | | |||| || || ||| ||||||||||||
Sbjct 118 AA-GGCTCCATCATCACTACCAAACGACAT-CGTAGAAGAAAT-TTTCTTAAGATTTCCG 174
Query 169 GTTAAAGCCCTAATCCGACTCAAGTCTCTCTCGAAACAATGGAGATCGACGATCGAATCT 228
|| ||||||||||||||||||||||||||||| ||| | |||| ||| |||||||| |||
Sbjct 175 GTGAAAGCCCTAATCCGACTCAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCT 234
Query 229 CGCAGTTTTGAAGAGAGACACTTGACGATCGCTAAGAAAGCCTTCGTGGATCATCCCAAG 288
|||||||||||||||||| |||||| | |||||||| |||||| | ||||||||||||||
Sbjct 235 CGCAGTTTTGAAGAGAGATACTTGAAGCTCGCTAAGCAAGCCTGCATGGATCATCCCAAG 294
Query 289 GTCATGCTCGT-AGGAGAAGAAGATCCCATAAGAGGAACCGGGAT-TCGTCCAG-ACACT 345
|||||| || | | |||||||||||||||||||| || |||| | |||||| | |||
Sbjct 295 GTCATGGTCATCA-CAGAAGAAGATCCCATAAGAGAAATCGGG-TATCGTCC-GTTCACA 351
Query 346 GACATTGGTTTTAGG-TTATTCTGCTTGGAATCGGCTTCTCTTCTATCCTTTACTCGTCT 404
||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 352 GACATTGGTTTTAGGACGA-TCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCT 410
Query 405 CAATTTCCCTCAAGGGTTCTTCAACTGGATCTACATATCTGAAAGCTGTGATGGCCTTTT 464
|||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||
Sbjct 411 CAATTTCCCTCAAGGGTTCTTCCACTGGATCAAAATCTCTGAAAGCTGTGATGGCCTTTT 470
Query 465 CTGCATCCATTCCCCAAAATCACATTCCGTATATGTAGTGAATCCGGCTACACGGTGGCT 524
||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 471 CTGTATCCATTCACCAAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGCT 530
Query 525 CCGCCTACTTCCTCCGGCAGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACTGAACG 584
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 531 CCGCCTACTTCCTCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACGGAGCG 590
Query 585 TGAGTGGAATGTAGTGATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTA 644
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGAGTGGAATATAGAAATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTA 650
Query 645 CAAATTAGTGTGGTTGTACAATTGTGATAAGTACATTGTTGATGCGTCGAGTCCAAACGT 704
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 651 CAAATTAGTGTGGTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGT 710
Query 705 GGGAGTCACAAAGTGCGAGATTTTTGACTTTAGGAAAAATGCTTGGAGGTACTTGGCTTG 764
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 711 GGGAGTCACAAAGTGCGAGGTTTTTGACTTTAGGGTAAATGCTTGGAGGTACTTGGCTTG 770
Query 765 CACTCCAAGTCATCAGATATTCTATTACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTA 824
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 771 CACTCCAAGTCATCGGATATTTTATGACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTA 830
Query 825 TTGGTTTACAGAACCATATAATGAAAGAATCGAAGTAGTGGCTTTTGATATTCAGACCGA 884
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 TTGGTTTACGGAACCATATAATGAAAGAATCGAAGTAGTGGCTTTTGATATTCATACCGA 890
Query 885 AACATTCCGGTTGCTGCCTAAGATTAATCCGGCTATTGCTGGTTCAGATCCTCACCATAT 944
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 891 AACATTCCGGTTGCTGCCTAAGATAAATCCGGCTATTGCTGGTTCAGATCCTCACCATAT 950
Query 945 TGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGGGAGAAA-GATACTATGA 1003
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 951 TGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGA-AAACGATACTATGA 1009
Query 1004 TCCAAGATATTTGGAGGTTGAAACCATCAGAAGACACATGGGAAAAGATTTTTAGCATAG 1063
||||||||||||||||| | ||||||||||||||||||||||| |||||||| | |||||
Sbjct 1010 TCCAAGATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAGATTTTCACCATAG 1069
Query 1064 ACTTGGTTTCCTGTCCTTCTTCTCGGA 1090
| ||| |||| ||| ||||||||||||
Sbjct 1070 ATTTGCTTTCTTGTTCTTCTTCTCGGA 1096
> Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118
Length=1224
Score = 976 bits (528), Expect = 0.0
Identities = 967/1173 (82%), Gaps = 53/1173 (5%)
Strand=Plus/Plus
Query 78 gaa-aagaagaagaagaaacgagaagCGAGTACTAATGGTTCCATCATCAT-TACCAAAC 135
||| ||||||||||||||||||||||| || | || | ||||||||| | | ||||||
Sbjct 30 GAAGAAGAAGAAGAAGAAACGAGAAGCCAG---TGATTGCTCCATCATC-TCTGCCAAAC 85
Query 136 GACGTGC-TAGAGGAGATCTTTTTAAGATTTCCGGTTAAAGCCCTAATCCGACTCAAGTC 194
||||| | | ||||| ||||| || ||||||| || ||||| ||| |||| | |
Sbjct 86 GACGT-CGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACTATTCCG-----A--C 137
Query 195 TCTCTCGAAACAATGGAGATCGACGATCGAATCTCGCAGT--TTTGAAGAGAGACACTTG 252
|||||||||||||||||||||||||||||| ||| || | || |||||||||||||||
Sbjct 138 TCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGAGAGACACTTG 195
Query 253 ACGATCGCTAAG-AAAGCCTTCGTGGATCATCCCAAG-GTCATGCTCGTAGGA--GAAGA 308
| |||||| || || || | |||| |||| || || || ||| | | | | ||| |
Sbjct 196 AGGATCGCCGAGCAATTCCGT-GTGGGTCAT-CCTAGAGTTATGGT-G-ATCACTGAAAA 251
Query 309 AGATCCCATAAGAGGAA--CCGGGA-TTCGTCCAGACACTGACATTGGTTTTAGGTTATT 365
||||||| ||| | || || | |||||||||||| |||||||||||||||| |||
Sbjct 252 AGATCCCCTAAAACTAATGCCTCTAGCTCGTCCAGACACAGACATTGGTTTTAGGTCATT 311
Query 366 CTGCTTGGAATCGGCTTCTCTTCTATCCTTTACTCGTCTCAATTTCCCTCAAGGGTTCTT 425
|||||||||||||| |||||||||||||||||||| ||||||||| |||||| | |||
Sbjct 312 CTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATTTTCCTCAAAGTTTCGC 371
Query 426 CAACTGGATCTACATATCTGAAAGCTGTGATGGCCTTTTCTGCATCCATTCCCCAAAATC 485
| ||| ||||| | |||| | | || |||||||||||||||||||||||||| |||||
Sbjct 372 CCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGCATCCATTCCCCGAAATC 431
Query 486 ACATTCCGTATATGTAGTGAATCCGGCTACACGGTGGCTCCGCCTACTTCCTCCGGC-AG 544
| |||||||||| || |||||||| |||| |||| | || | ||||||||| || |
Sbjct 432 GGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGGCAACTTCCTCCAGCTA- 490
Query 545 GGTTTCAGATTTTGATCCACAAGTTTAACCCCAC-TGAACGTGAGTGGAATGTAGTGATG 603
||||||| |||||||| |||||||||||||| || | | | || ||| | ||| |||
Sbjct 491 GGTTTCAAATTTTGATGCACAAGTTTAACCCTACTTTTA-GAGATTGG-A--TAGACATG 546
Query 604 AAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTGGTTGTAC 663
| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 547 GAGTCAGTCTTTCATCTAGCCTTCGTGAAGGCCACTAATTACAAATTAGTGTGGTTGTAT 606
Query 664 AATTGTGATAAGTACATTGTTGATGCGTCGAGTCCAAACGTGGGAGTCACAAAGTGCGAG 723
|||| ||||||||||| || |||||| ||||||||||||| |||||| || |||||||||
Sbjct 607 AATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACGAGGGAGTTACCAAGTGCGAG 666
Query 724 ATTTTTGACTTTAGGAAAAATGCTTGGAGGTACTTGGCTTGCACTCCAAGTCATCAGATA 783
|||||||||| ||| ||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 667 GTTTTTGACTTCAGGGCAAACGCTTGGAGGTACTTGGCTTGCACTCCAAGTTATCGGATA 726
Query 784 T-TCTATTACCAAA-AGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTACAGAACCAT 841
| || || | |||| | ||||||| |||||||||||| || |||||||| || || ||||
Sbjct 727 TATC-ATGATCAAATA-CCAGCATGTGCAAACGGGTCAGTATATTGGTTCACGGAGCCAT 784
Query 842 ATAATGA-AAGAATCGAAGTAGTGGCTTTTGATATTCAGACCGAAACATTCCGGTTGCTG 900
||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 785 ATAATGATAA-AATCGAAGTAGTGGCTTTTGATATTCATACCGAATCATTCCGGTTGCTG 843
Query 901 CCTAAGATTAATCCGGCTATTGCTGGTTCAGATCCTCAC-CATATTGACATGTGCACTCT 959
||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 844 CCTAAGATTAAACCGGCTATTGCTGGTTCAGATCCG-AGGCATATTGACATGTGCACTCT 902
Query 960 GGATAATAGTTTGTGTATGTCGAAAAGGGAGAAA-G-ATAC-TATGATCCAAGATATTTG 1016
||||||| ||||||| ||||||||||| |||| | |||| | || ||||||| |||||
Sbjct 903 GGATAATGGTTTGTGCATGTCGAAAAG--AGAACCGGATACGT-TGGTCCAAGAGATTTG 959
Query 1017 GAGGTTGAAACCATCAGAAGACACATGGGAAAAGATTTTTAGCATAGACTTGGTTTCCTG 1076
|||||||||| ||||||||||| |||||| ||||||| || ||| || ||| |||| ||
Sbjct 960 GAGGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATACCATTGATTTGCTTTCTTG 1019
Query 1077 TCCTTCTTCTCGGACTGAGAAGCGTGATCAATTTGATTGGAGCAAGAAGGATAGGGTTGA 1136
| ||||||| |||| | || || ||| ||||||| ||||||| ||||||| ||||||
Sbjct 1020 TTCTTCTTCCCGGAATCAGTTTCGCGATGAATTTGACTGGAGCAGGAAGGATTTGGTTGA 1079
Query 1137 GCCAGCCACACCCGTCGCGGTTTGTAAGAATAAGAAGATCCTT-CTCTCACATCGCTATT 1195
||| ||||||| || ||||| || ||||| ||||||||| || ||||||||||||||||
Sbjct 1080 TCCATCCACACCGGTGGCGGTATGCAAGAACAAGAAGATC-TTGCTCTCACATCGCTATT 1138
Query 1196 CCCGAGGTTTGGTAAAGTACGATCCCCTAACAA 1228
|||| ||| ||||||| || |||||||||||||
Sbjct 1139 CCCGCGGTCTGGTAAAATATGATCCCCTAACAA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5