BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13220.2
Length=3600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471477 jgi|Araly1|471477|fgenesh2_kg.1__1431__AT1G13220.1 1773 0.0
> Ahg471477 jgi|Araly1|471477|fgenesh2_kg.1__1431__AT1G13220.1
Length=1302
Score = 1773 bits (960), Expect = 0.0
Identities = 1057/1105 (96%), Gaps = 2/1105 (0%)
Strand=Plus/Plus
Query 1 ATGACGCCGAGAAGCGAGACGCATAAAATCGGCGGTGTTACTAACCCTAGAAACGCTGAT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATGACGCCGAGAAGCGAGAAGCATAAAATCGGCGGTGTTACTAACCCTAGAAACGCTGAT 134
Query 61 AGAAAAGGAAAGGCGGTTGCTTTCAGTGATGACCTAGTAATACCGACTCTTCCTCCGCCT 120
||||| ||||||||||||||||| || ||||||||||| ||| ||||||| || ||||||
Sbjct 135 AGAAAGGGAAAGGCGGTTGCTTTTAGCGATGACCTAGTGATATCGACTCTCCCACCGCCT 194
Query 121 CCGATTGGAACACTGACCGGACAAGGCGTTTCTCGAGGTCACACTGATGATATGGATATG 180
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 195 CCGATTGGAACACTGACCGGAGAAGGCGTTTCTCGAGGTTACACTGATGATATGGATATG 254
Query 181 GGTGATTGGAGAAGGTTTAGGGAAGTGGGTTTGTTGAATGAGGCTTCAATGGAGAAGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGTGATTGGAGAAGGTTTAGGGAAGTGGGTTTGTTGAATGAGGCTTCAATGGAGAAGAAA 314
Query 241 GATCAAGAAGCTCTTCTTGAAAAGATCTCTACACTTGAAAAAGAGTTATATGGCTATCAG 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 315 GATCAAGAAGCTCTTCTTGAAAAGATCTCCACACTTGAAAAAGAGTTATATGGCTATCAG 374
Query 301 CACAATATGGGGCTTCTTCTTATGGAGAACAAAGAGTTGGTTTCAAAGCACGAACAACTA 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 375 CACAATATGGGGCTTCTTCTCATGGACAACAAAGAGTTGGTTTCAAAGCACGATCAACTA 434
Query 361 AATCAGGCATTCCAAGAAGCTCAAGAAATCCTTAAAAGGGAACAGTCATCACATCTGTAT 420
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 435 AATCAGGCATTGCAAGAAGCTCAAGAAATCCTTAAAAGGGAACAGTCGTCACATCTGTAT 494
Query 421 GCATTGACGACGGTTGAACAACGTGAAGAAAACTTGAGGAAAGCCTTGGGTCTGGAAAAG 480
|| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 495 GCGTTGACGACTGTCGAACAACGTGAAGAAAACTTGAGAAAAGCTTTGGGTCTGGAAAAG 554
Query 481 CAATGTGTGCAAGAGCTTGAGAAGGCTCTTCGTGAAATTCAAGAGGAGAATAGCAAGATA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CAATGTGTGCAAGAGCTTGAGAAGGCTCTTCGTGAAATTCAAGAGGAGAATAGCAAGATG 614
Query 541 AGGCTGAGTTCTGAAGCTAAATTAGTTGAAGCAAATGCTCTGGTTGCTAGTGTAAACGGG 600
||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 615 AGGCTGACTTCTGAAGCTAAATTAGTTGAAGCTAATGCTTTGGTTGCTAGTGTTAACGGG 674
Query 601 AGATCTTCAGACGTGGAAAACAAGATTTACTCTGCCGAAAGCAAGCTCGCAGAGGCAACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGATCTTCAGACGTGGAAAACAAGATTTACTCTGCCGAAAGCAAGCTCGCAGAGGCAACT 734
Query 661 AGAAAGAGCTCCGAGCTGAAATTGAGATTGAAGGAAGTGGAGACTCGTGAAAGTGTCCTG 720
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 735 AGAAAGAGCTCCGAGCTGAAAATGAGATTGAAGGAAGTGGAGACTCGTGAAAGTGTCCTG 794
Query 721 CAACAAGAACGGCTTTCATTTACTAAAGAGCGAGAATCATATGAAGGGACTTTCCAAAAG 780
||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 795 AAACAAGAGCGGCTTTCATTTGCTAAAGAGCGAGAATCATATGAAGGGACTTTCCACAAG 854
Query 781 CAAAGAGAGTACCTTAATGAATGGGAGAAAAAGCTTCAAGGAAAGGAAGAA-TCCATAAC 839
|||||||||||||||||||||||||||||||||||||||| |||||||||| | || ||
Sbjct 855 CAAAGAGAGTACCTTAATGAATGGGAGAAAAAGCTTCAAGAAAAGGAAGAAATA-ATGAC 913
Query 840 TGAGCAGAAGAGaaacctgaatcaaagagaggaaaaggttaatgaaatagaaaagaagct 899
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 914 TGAGCAGAAGAGAAGCCTGAATCAAAGAGAGGAAAAGGTTAATGAAAAAGAAAAGAAACT 973
Query 900 gaagctgaaagaaaaagaacttgaagaatggaatagaaagGTTGATTTGTCTATGTCGAA 959
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 974 GAAGCTGAAAGAAAAAGAACTTGAAGAATGGGATAGAAAGGTTGATTTGTCTATGTCGAA 1033
Query 960 GTCTAAAGAAACTGAAGAGGACATAACTAAACGTTTGGAAGAATTGACTACAAAAGAGAA 1019
|| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1034 GTGTAAGGAAACTGAAGAGGACATAACGAAACGATTGGAAGAATTGACTACAAAAGAGAA 1093
Query 1020 AGAAGCTCACACACTCCAGATCACGCTATTGGCAAAGGAGAATGAGTTACGAGCATTTGA 1079
|||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||
Sbjct 1094 AGAAGCTCACACACTCCAGAGCACGCTAGTGTCAAAGGAGAATGAGTTACGAGCCTTTGA 1153
Query 1080 AGAGAAGCTCATTGCTAGAGAAGGG 1104
|||||||||||||||||||||||||
Sbjct 1154 AGAGAAGCTCATTGCTAGAGAAGGG 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135979708329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5