BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13220.2 Length=3600 Score E Sequences producing significant alignments: (Bits) Value Ahg471477 jgi|Araly1|471477|fgenesh2_kg.1__1431__AT1G13220.1 1773 0.0 > Ahg471477 jgi|Araly1|471477|fgenesh2_kg.1__1431__AT1G13220.1 Length=1302 Score = 1773 bits (960), Expect = 0.0 Identities = 1057/1105 (96%), Gaps = 2/1105 (0%) Strand=Plus/Plus Query 1 ATGACGCCGAGAAGCGAGACGCATAAAATCGGCGGTGTTACTAACCCTAGAAACGCTGAT 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 75 ATGACGCCGAGAAGCGAGAAGCATAAAATCGGCGGTGTTACTAACCCTAGAAACGCTGAT 134 Query 61 AGAAAAGGAAAGGCGGTTGCTTTCAGTGATGACCTAGTAATACCGACTCTTCCTCCGCCT 120 ||||| ||||||||||||||||| || ||||||||||| ||| ||||||| || |||||| Sbjct 135 AGAAAGGGAAAGGCGGTTGCTTTTAGCGATGACCTAGTGATATCGACTCTCCCACCGCCT 194 Query 121 CCGATTGGAACACTGACCGGACAAGGCGTTTCTCGAGGTCACACTGATGATATGGATATG 180 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 195 CCGATTGGAACACTGACCGGAGAAGGCGTTTCTCGAGGTTACACTGATGATATGGATATG 254 Query 181 GGTGATTGGAGAAGGTTTAGGGAAGTGGGTTTGTTGAATGAGGCTTCAATGGAGAAGAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 GGTGATTGGAGAAGGTTTAGGGAAGTGGGTTTGTTGAATGAGGCTTCAATGGAGAAGAAA 314 Query 241 GATCAAGAAGCTCTTCTTGAAAAGATCTCTACACTTGAAAAAGAGTTATATGGCTATCAG 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 315 GATCAAGAAGCTCTTCTTGAAAAGATCTCCACACTTGAAAAAGAGTTATATGGCTATCAG 374 Query 301 CACAATATGGGGCTTCTTCTTATGGAGAACAAAGAGTTGGTTTCAAAGCACGAACAACTA 360 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 375 CACAATATGGGGCTTCTTCTCATGGACAACAAAGAGTTGGTTTCAAAGCACGATCAACTA 434 Query 361 AATCAGGCATTCCAAGAAGCTCAAGAAATCCTTAAAAGGGAACAGTCATCACATCTGTAT 420 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 435 AATCAGGCATTGCAAGAAGCTCAAGAAATCCTTAAAAGGGAACAGTCGTCACATCTGTAT 494 Query 421 GCATTGACGACGGTTGAACAACGTGAAGAAAACTTGAGGAAAGCCTTGGGTCTGGAAAAG 480 || |||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 495 GCGTTGACGACTGTCGAACAACGTGAAGAAAACTTGAGAAAAGCTTTGGGTCTGGAAAAG 554 Query 481 CAATGTGTGCAAGAGCTTGAGAAGGCTCTTCGTGAAATTCAAGAGGAGAATAGCAAGATA 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 555 CAATGTGTGCAAGAGCTTGAGAAGGCTCTTCGTGAAATTCAAGAGGAGAATAGCAAGATG 614 Query 541 AGGCTGAGTTCTGAAGCTAAATTAGTTGAAGCAAATGCTCTGGTTGCTAGTGTAAACGGG 600 ||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 615 AGGCTGACTTCTGAAGCTAAATTAGTTGAAGCTAATGCTTTGGTTGCTAGTGTTAACGGG 674 Query 601 AGATCTTCAGACGTGGAAAACAAGATTTACTCTGCCGAAAGCAAGCTCGCAGAGGCAACT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 AGATCTTCAGACGTGGAAAACAAGATTTACTCTGCCGAAAGCAAGCTCGCAGAGGCAACT 734 Query 661 AGAAAGAGCTCCGAGCTGAAATTGAGATTGAAGGAAGTGGAGACTCGTGAAAGTGTCCTG 720 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 735 AGAAAGAGCTCCGAGCTGAAAATGAGATTGAAGGAAGTGGAGACTCGTGAAAGTGTCCTG 794 Query 721 CAACAAGAACGGCTTTCATTTACTAAAGAGCGAGAATCATATGAAGGGACTTTCCAAAAG 780 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 795 AAACAAGAGCGGCTTTCATTTGCTAAAGAGCGAGAATCATATGAAGGGACTTTCCACAAG 854 Query 781 CAAAGAGAGTACCTTAATGAATGGGAGAAAAAGCTTCAAGGAAAGGAAGAA-TCCATAAC 839 |||||||||||||||||||||||||||||||||||||||| |||||||||| | || || Sbjct 855 CAAAGAGAGTACCTTAATGAATGGGAGAAAAAGCTTCAAGAAAAGGAAGAAATA-ATGAC 913 Query 840 TGAGCAGAAGAGaaacctgaatcaaagagaggaaaaggttaatgaaatagaaaagaagct 899 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 914 TGAGCAGAAGAGAAGCCTGAATCAAAGAGAGGAAAAGGTTAATGAAAAAGAAAAGAAACT 973 Query 900 gaagctgaaagaaaaagaacttgaagaatggaatagaaagGTTGATTTGTCTATGTCGAA 959 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 974 GAAGCTGAAAGAAAAAGAACTTGAAGAATGGGATAGAAAGGTTGATTTGTCTATGTCGAA 1033 Query 960 GTCTAAAGAAACTGAAGAGGACATAACTAAACGTTTGGAAGAATTGACTACAAAAGAGAA 1019 || ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1034 GTGTAAGGAAACTGAAGAGGACATAACGAAACGATTGGAAGAATTGACTACAAAAGAGAA 1093 Query 1020 AGAAGCTCACACACTCCAGATCACGCTATTGGCAAAGGAGAATGAGTTACGAGCATTTGA 1079 |||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||| Sbjct 1094 AGAAGCTCACACACTCCAGAGCACGCTAGTGTCAAAGGAGAATGAGTTACGAGCCTTTGA 1153 Query 1080 AGAGAAGCTCATTGCTAGAGAAGGG 1104 ||||||||||||||||||||||||| Sbjct 1154 AGAGAAGCTCATTGCTAGAGAAGGG 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 135979708329 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5