BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13230.1 Length=1428 Score E Sequences producing significant alignments: (Bits) Value Ahg471479 jgi|Araly1|471479|fgenesh2_kg.1__1433__AT1G13230.1 1925 0.0 Ahg896416 jgi|Araly1|896416|Al_scaffold_0005_382 830 0.0 > Ahg471479 jgi|Araly1|471479|fgenesh2_kg.1__1433__AT1G13230.1 Length=1360 Score = 1925 bits (1042), Expect = 0.0 Identities = 1242/1337 (93%), Gaps = 19/1337 (1%) Strand=Plus/Plus Query 1 AATACATCACACGCTCTGTTTCTCCTGTTCTTGTTCTCTGTCTGAACAATGTTGTGGCAA 60 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 AATACATTACACGCTCTGTTTCTCCTGTTCTTGTTCTCTGTGTGAACAATGTTGTGGCAA 60 Query 61 ACGtttttttCCTCTCTTCTCTTACTATCTCTGCTTTTCGGATGTAACGGAGATGAATCT 120 |||||||||| |||||||||||||||||||||||||||| | |||| ||||||||| ||| Sbjct 61 ACGTTTTTTTACTCTCTTCTCTTACTATCTCTGCTTTTCTGTTGTACCGGAGATGAGTCT 120 Query 121 TTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTG 180 Query 181 TACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGAT 240 Query 241 CCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGACATCTACAATGACCTGTGGTAT 300 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 241 CCTTGTGGTTGGACTCCAATTCAGGGTGTTTCATGTGACATCTACAATGACTTGTGGTAT 300 Query 301 GTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCTCAAGTCTT 360 ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 301 GTCACAGATTTGAGTTTAGGGCTTATTTACGAAAACTCGCTTGCTTGCTCCTCAAGTCTT 360 Query 361 CAGATAAGACCAGAGTTATTTGAGCTCAAGCATTTAAGATCTCTCTCCTTCTTCAACTGC 420 |||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 361 CAGATAAGGCCAGAATTATTTGAGCTCAAGCACTTAAGGTCTCTCTCCTTCTTCAACTGC 420 Query 421 TTTATCTCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTTTGCATCTAACTTA 480 ||||||||||||||||||||| | ||| | ||||||||||||||||||| Sbjct 421 TTTATCTCTCCCATGGTGATA--T-----GGA----T----AAACTTTGCATCTAACTTA 465 Query 481 GAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCCTGAAACAATTGGA 540 ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 466 GAATCGCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGAAACTTCCTGAAACAATTGGC 525 Query 541 AATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAGTGGAGAGCTACCC 600 |||||||||||||||||||| ||||| ||||||| |||||| || | |||||| ||||| Sbjct 526 AATCTCACAAAGCTGAAGTCCTTAGTAGTTCTCGGAAATGGGTTCAATGGAGAACTACCG 585 Query 601 GCGAGTATCTGCAACTTAAAGAGA-CTAAAGAGGCTGGTTTTCGCAGGGAACTCGTTTGC 659 |||||||||||||||||||||| | |||||| |||| ||||||||||||||||| || || Sbjct 586 GCGAGTATCTGCAACTTAAAGA-ATCTAAAGCGGCTTGTTTTCGCAGGGAACTCATTCGC 644 Query 660 GGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCG 719 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 GGGAATGATCCCAAATTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCG 704 Query 720 CAACTCTTTCTCAGGGACATTGCCTACATCTTTTGGAGATTTGGTTTCATTGCTCAAGCT 779 |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| Sbjct 705 TAACTCTTTCTCAGGGACATTGCCTTCATCTGTTGGAGATTTGGTTTCTTTGCTCAAGCT 764 Query 780 TGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAACTAGGATTTTTGAAGAA 839 |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 765 TGACTTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAAATAGGGCTTTTGAAGAA 824 Query 840 TTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGA 899 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 TTTGACACTTTTGGATCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGA 884 Query 900 AAATATCCAATCTCTAACGGAATTAGTTTTATCTAACAATCCAATGGGTGAAGAGGATAT 959 |||||| ||||||||||||||||| || ||||| ||||||||||||||||| || ||||| Sbjct 885 AAATATTCAATCTCTAACGGAATTGGTGTTATCAAACAATCCAATGGGTGAGGAAGATAT 944 Query 960 GGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGTAGTTTTGGACTTATCCAAAATGGG 1019 | |||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| Sbjct 945 GATGGGAACAAAGTGGGAAAAGATGAAAAATTTGGTAGTTTTGGATTTATCCAAAATGGG 1004 Query 1020 TTTGAGAGGTGAGATTCCTACAAGTCTAACCAACCTGAAGAGGTTAAGGTTTCTTGGTCT 1079 |||||||||||||||||| ||||||||||||||| |||| | ||| || ||||||||||| Sbjct 1005 TTTGAGAGGTGAGATTCCAACAAGTCTAACCAACTTGAAAACGTTGAGATTTCTTGGTCT 1064 Query 1080 GAACAACAACAATCTAACCGGTTTTGTTCCATCGAAGAAGCTTGAAGCTTTGCCTTGCCT 1139 |||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| || Sbjct 1065 GAACAACAACAATCTAACAGGTTTTGTTCCATCAAAGAAACTAGAGGCTTTGCCTTGTCT 1124 Query 1140 TGGTGCTTTATACATCAATGGAAACAACCTAACAGGTGAGCTTAGATTCTCTACAAAGTT 1199 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1125 TGGTGCTTTATACATCAATGAAAACAACTTAACAGGTGAGCTTAGATTCTCTACAAAGTT 1184 Query 1200 CTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAAGAATCCAAATCTGTGTCAACC-TT 1258 ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct 1185 CTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAGGAATCCAAATCTTTGTCAACCATT 1244 Query 1259 TAGAGATGGTAATGTCAGAATCTCATAAACATTTAAGTCCTCTTGGAGTGAAGCCATGCA 1318 | || ||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||| Sbjct 1245 T-GAAATGGTAAAGTCAGAATCTCATAAGCATTTACTTCCTCGTGGAGTGAAGCCATGCA 1303 Query 1319 CTTAAGAGAAGGAAGAA 1335 ||||||||||||||||| Sbjct 1304 CTTAAGAGAAGGAAGAA 1320 > Ahg896416 jgi|Araly1|896416|Al_scaffold_0005_382 Length=1428 Score = 830 bits (449), Expect = 0.0 Identities = 935/1164 (80%), Gaps = 56/1164 (5%) Strand=Plus/Plus Query 115 GAATCTTTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAA 174 ||||| | ||| ||||| ||||| ||| | |||||| ||||| |||| ||||| ||| Sbjct 61 GAATCATCACCGGAAGTCACTGA---TGATGGAGCTCCGATGGAGAAAACAGAACAAGAA 117 Query 175 GC-CTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTA 233 || ||| ||||| || ||||||||||||||||||||||||||||| || |||| ||| || Sbjct 118 GCTCTT-TACTCAGCTATTCAAGGATTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTA 176 Query 234 TCCTGATCCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGA-CATCTACAATGACC 292 ||||| ||||||||||||||||| |||||||||||||||||||| | | || |||| Sbjct 177 CCCTGACCCTTGTGGTTGGACTCCTATTCAGGGTGTTTCTTGTGATC-TTTATGGTGACT 235 Query 293 TGTGGTATGTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCT 352 ||||||||||||||||| | | |||| || || |||||||||||||| ||||| | Sbjct 236 TGTGGTATGTCACGGATCTAACCCTAGGTCTCGTTCATGAAAACTCGCTTTCTTGC-GGT 294 Query 353 -CAAGTCTT-CAGAT-AAGACCAGAGTTATTTGAGCTCAAGCA-TTTAAGATCTCTCTCC 408 ||||| || |||| ||| ||| |||| || | |||||||| || || ||||||| | Sbjct 295 GCAAGT-TTGAAGATAAAG-CCACAGTTGTTCAAACTCAAGCACTTGAA-ATCTCTCACG 351 Query 409 TTCTTCAACTGCTTTATC-TCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTT 467 |||||||||||||| | | || || || ||| |||||||||| | |||| ||||| Sbjct 352 TTCTTCAACTGCTTCA-CTTCGCCGATAACAATACCTAAAGAGGA--T-TGGATTAACTT 407 Query 468 TGCATCTAACTTAGAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCC 527 ||| ||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| Sbjct 408 GGCAAGTAACTTAGAATCTCTCGAGTTTAGATCCAATCCTGGTTTGATTGGTGAACTTCC 467 Query 528 TGAAACAATTGGAAATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAG 587 ||||||||||||| ||||||||||||||||||||| |||||||| ||||| || |||| Sbjct 468 TGAAACAATTGGATGTCTCACAAAGCTGAAGTCTTTGGTGGTTCTTGAAAACGGGTTTAA 527 Query 588 TGGAGA-GCTACCCG-CGAGTATCTGCAACTTAAAGAGACTAAAGA-GGCTGGTTTTCGC 644 || || | |||| | ||||| ||||||| |||| || |||| | || ||||| | || Sbjct 528 CGG-GAAGTTACC-GACGAGTCTCTGCAATTTAACTAGGTTAAA-ACGGTTGGTTCTGGC 584 Query 645 AGGGAA-CTCGTTTGCGGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCT-CTTG 702 ||||| || ||| |||||| ||| || | ||||| || ||||| || || | || | Sbjct 585 -GGGAAACTTGTTCACGGGAACGATTCCGGATTGTTTTAATGGGTTTAAGGATTTACT-G 642 Query 703 ATCTTGGATTTGAGCCGCAACTCTT-TCTCAGGGACATTGCCTACATCTTTTGGAGATTT 761 ||||||||| |||| || |||| | ||||||||||||||||| | || ||||||| | Sbjct 643 ATCTTGGATATGAGTCGGAACT-TAATCTCAGGGACATTGCCTTCGTCCATTGGAGAGAT 701 Query 762 GGTTTCATTGCTCAAGCTTGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGA 821 |||||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||| Sbjct 702 GGTTTCATTGCTTAAGCTTGACCTAAGCAATAACCACTTAGAAGGCAAGTTACCTCAAGA 761 Query 822 ACTAGGATTTTTGAAGAATTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGG 881 | | || |||||||||||| ||||||| ||||| || |||||||||| | ||||||| || Sbjct 762 AATCGGGTTTTTGAAGAATCTGACACTGTTGGATCTTAGGAACAACATAATCTCTGGAGG 821 Query 882 GCTGTCC-AAGAATATTGAAAATATCCAATCTCTAACGGAA-TTAGTTTTATCTAAC-AA 938 | ||| | || || | | ||| || | |||| ||||||| || |||||||| | || Sbjct 822 GTTGTTCGAA-AACGTCGTAAAGATTCGATCTTTAACGGATCTT-GTTTTATC-AGGGAA 878 Query 939 TCCAATGGGT-GAAGAGGATATGGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGT-A 996 |||||||| | || || ||| |||||| ||| |||| ||| ||| |||||||||| | Sbjct 879 CCCAATGGGCAGT-GATGACATGATGGGAATAAAGTGGGAGAATATGGGCAATTTGGTCA 937 Query 997 GTTTTGGA-CTTATCCAAA-ATGGGTTTGAGAGGTGAGATTCCTACAAGTCTAACCAACC 1054 ||||||| || || ||| |||||||| ||||||||||||||| | || |||| || Sbjct 938 -TTTTGGATCTG-TC-AAAGATGGGTTTAAGAGGTGAGATTCCTTTAGGTTTAAC-AAGT 993 Query 1055 T-GAAGAGGTTAAGGTTTCTTGGTCTGAACAACAACAATCTAACCGGTTTTGTTCCATCG 1113 | ||| || || |||||||||||||| ||| |||||||| ||||||| ||| |||||| Sbjct 994 TTGAAAAGATTGAGGTTTCTTGGTCTCAACGACAACAATTTAACCGGCACTGTCCCATCG 1053 Query 1114 AAGAAG-CTTGA-AGCTTTGCCTTGCCTTGGTGCTTTATACATCAATGGAAACAACCTAA 1171 | |||| || || | | |||||||| ||||||||| | ||||||||||||||||| ||| Sbjct 1054 A-GAAGGCTCGAGA-CATTGCCTTGTCTTGGTGCTCTCTACATCAATGGAAACAATCTAT 1111 Query 1172 CAGGTGAGCTTAGA-TTCTCTACAAAGTTCTATGAGAAGATGGGAA-GAAGATTTAAAGC 1229 |||| |||||| || ||||| | ||||||||||||||||||||||| || ||||||| || Sbjct 1112 CAGGAGAGCTT-GAATTCTCAAGAAAGTTCTATGAGAAGATGGGAACGA-GATTTAAGGC 1169 Query 1230 TTCAAAGAATCCAAATCTGTGTCA 1253 |||||||||||||||||| ||||| Sbjct 1170 TTCAAAGAATCCAAATCTTTGTCA 1193 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53402523490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5