BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13230.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471479 jgi|Araly1|471479|fgenesh2_kg.1__1433__AT1G13230.1 1925 0.0
Ahg896416 jgi|Araly1|896416|Al_scaffold_0005_382 830 0.0
> Ahg471479 jgi|Araly1|471479|fgenesh2_kg.1__1433__AT1G13230.1
Length=1360
Score = 1925 bits (1042), Expect = 0.0
Identities = 1242/1337 (93%), Gaps = 19/1337 (1%)
Strand=Plus/Plus
Query 1 AATACATCACACGCTCTGTTTCTCCTGTTCTTGTTCTCTGTCTGAACAATGTTGTGGCAA 60
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AATACATTACACGCTCTGTTTCTCCTGTTCTTGTTCTCTGTGTGAACAATGTTGTGGCAA 60
Query 61 ACGtttttttCCTCTCTTCTCTTACTATCTCTGCTTTTCGGATGTAACGGAGATGAATCT 120
|||||||||| |||||||||||||||||||||||||||| | |||| ||||||||| |||
Sbjct 61 ACGTTTTTTTACTCTCTTCTCTTACTATCTCTGCTTTTCTGTTGTACCGGAGATGAGTCT 120
Query 121 TTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTG 180
Query 181 TACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGAT 240
Query 241 CCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGACATCTACAATGACCTGTGGTAT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 241 CCTTGTGGTTGGACTCCAATTCAGGGTGTTTCATGTGACATCTACAATGACTTGTGGTAT 300
Query 301 GTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCTCAAGTCTT 360
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 301 GTCACAGATTTGAGTTTAGGGCTTATTTACGAAAACTCGCTTGCTTGCTCCTCAAGTCTT 360
Query 361 CAGATAAGACCAGAGTTATTTGAGCTCAAGCATTTAAGATCTCTCTCCTTCTTCAACTGC 420
|||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 361 CAGATAAGGCCAGAATTATTTGAGCTCAAGCACTTAAGGTCTCTCTCCTTCTTCAACTGC 420
Query 421 TTTATCTCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTTTGCATCTAACTTA 480
||||||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct 421 TTTATCTCTCCCATGGTGATA--T-----GGA----T----AAACTTTGCATCTAACTTA 465
Query 481 GAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCCTGAAACAATTGGA 540
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 466 GAATCGCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGAAACTTCCTGAAACAATTGGC 525
Query 541 AATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAGTGGAGAGCTACCC 600
|||||||||||||||||||| ||||| ||||||| |||||| || | |||||| |||||
Sbjct 526 AATCTCACAAAGCTGAAGTCCTTAGTAGTTCTCGGAAATGGGTTCAATGGAGAACTACCG 585
Query 601 GCGAGTATCTGCAACTTAAAGAGA-CTAAAGAGGCTGGTTTTCGCAGGGAACTCGTTTGC 659
|||||||||||||||||||||| | |||||| |||| ||||||||||||||||| || ||
Sbjct 586 GCGAGTATCTGCAACTTAAAGA-ATCTAAAGCGGCTTGTTTTCGCAGGGAACTCATTCGC 644
Query 660 GGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCG 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GGGAATGATCCCAAATTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCG 704
Query 720 CAACTCTTTCTCAGGGACATTGCCTACATCTTTTGGAGATTTGGTTTCATTGCTCAAGCT 779
|||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 705 TAACTCTTTCTCAGGGACATTGCCTTCATCTGTTGGAGATTTGGTTTCTTTGCTCAAGCT 764
Query 780 TGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAACTAGGATTTTTGAAGAA 839
|||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 765 TGACTTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAAATAGGGCTTTTGAAGAA 824
Query 840 TTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGA 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTTGACACTTTTGGATCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGA 884
Query 900 AAATATCCAATCTCTAACGGAATTAGTTTTATCTAACAATCCAATGGGTGAAGAGGATAT 959
|||||| ||||||||||||||||| || ||||| ||||||||||||||||| || |||||
Sbjct 885 AAATATTCAATCTCTAACGGAATTGGTGTTATCAAACAATCCAATGGGTGAGGAAGATAT 944
Query 960 GGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGTAGTTTTGGACTTATCCAAAATGGG 1019
| |||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 945 GATGGGAACAAAGTGGGAAAAGATGAAAAATTTGGTAGTTTTGGATTTATCCAAAATGGG 1004
Query 1020 TTTGAGAGGTGAGATTCCTACAAGTCTAACCAACCTGAAGAGGTTAAGGTTTCTTGGTCT 1079
|||||||||||||||||| ||||||||||||||| |||| | ||| || |||||||||||
Sbjct 1005 TTTGAGAGGTGAGATTCCAACAAGTCTAACCAACTTGAAAACGTTGAGATTTCTTGGTCT 1064
Query 1080 GAACAACAACAATCTAACCGGTTTTGTTCCATCGAAGAAGCTTGAAGCTTTGCCTTGCCT 1139
|||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| ||
Sbjct 1065 GAACAACAACAATCTAACAGGTTTTGTTCCATCAAAGAAACTAGAGGCTTTGCCTTGTCT 1124
Query 1140 TGGTGCTTTATACATCAATGGAAACAACCTAACAGGTGAGCTTAGATTCTCTACAAAGTT 1199
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1125 TGGTGCTTTATACATCAATGAAAACAACTTAACAGGTGAGCTTAGATTCTCTACAAAGTT 1184
Query 1200 CTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAAGAATCCAAATCTGTGTCAACC-TT 1258
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 1185 CTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAGGAATCCAAATCTTTGTCAACCATT 1244
Query 1259 TAGAGATGGTAATGTCAGAATCTCATAAACATTTAAGTCCTCTTGGAGTGAAGCCATGCA 1318
| || ||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1245 T-GAAATGGTAAAGTCAGAATCTCATAAGCATTTACTTCCTCGTGGAGTGAAGCCATGCA 1303
Query 1319 CTTAAGAGAAGGAAGAA 1335
|||||||||||||||||
Sbjct 1304 CTTAAGAGAAGGAAGAA 1320
> Ahg896416 jgi|Araly1|896416|Al_scaffold_0005_382
Length=1428
Score = 830 bits (449), Expect = 0.0
Identities = 935/1164 (80%), Gaps = 56/1164 (5%)
Strand=Plus/Plus
Query 115 GAATCTTTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAA 174
||||| | ||| ||||| ||||| ||| | |||||| ||||| |||| ||||| |||
Sbjct 61 GAATCATCACCGGAAGTCACTGA---TGATGGAGCTCCGATGGAGAAAACAGAACAAGAA 117
Query 175 GC-CTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTA 233
|| ||| ||||| || ||||||||||||||||||||||||||||| || |||| ||| ||
Sbjct 118 GCTCTT-TACTCAGCTATTCAAGGATTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTA 176
Query 234 TCCTGATCCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGA-CATCTACAATGACC 292
||||| ||||||||||||||||| |||||||||||||||||||| | | || ||||
Sbjct 177 CCCTGACCCTTGTGGTTGGACTCCTATTCAGGGTGTTTCTTGTGATC-TTTATGGTGACT 235
Query 293 TGTGGTATGTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCT 352
||||||||||||||||| | | |||| || || |||||||||||||| ||||| |
Sbjct 236 TGTGGTATGTCACGGATCTAACCCTAGGTCTCGTTCATGAAAACTCGCTTTCTTGC-GGT 294
Query 353 -CAAGTCTT-CAGAT-AAGACCAGAGTTATTTGAGCTCAAGCA-TTTAAGATCTCTCTCC 408
||||| || |||| ||| ||| |||| || | |||||||| || || ||||||| |
Sbjct 295 GCAAGT-TTGAAGATAAAG-CCACAGTTGTTCAAACTCAAGCACTTGAA-ATCTCTCACG 351
Query 409 TTCTTCAACTGCTTTATC-TCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTT 467
|||||||||||||| | | || || || ||| |||||||||| | |||| |||||
Sbjct 352 TTCTTCAACTGCTTCA-CTTCGCCGATAACAATACCTAAAGAGGA--T-TGGATTAACTT 407
Query 468 TGCATCTAACTTAGAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCC 527
||| ||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 408 GGCAAGTAACTTAGAATCTCTCGAGTTTAGATCCAATCCTGGTTTGATTGGTGAACTTCC 467
Query 528 TGAAACAATTGGAAATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAG 587
||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct 468 TGAAACAATTGGATGTCTCACAAAGCTGAAGTCTTTGGTGGTTCTTGAAAACGGGTTTAA 527
Query 588 TGGAGA-GCTACCCG-CGAGTATCTGCAACTTAAAGAGACTAAAGA-GGCTGGTTTTCGC 644
|| || | |||| | ||||| ||||||| |||| || |||| | || ||||| | ||
Sbjct 528 CGG-GAAGTTACC-GACGAGTCTCTGCAATTTAACTAGGTTAAA-ACGGTTGGTTCTGGC 584
Query 645 AGGGAA-CTCGTTTGCGGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCT-CTTG 702
||||| || ||| |||||| ||| || | ||||| || ||||| || || | || |
Sbjct 585 -GGGAAACTTGTTCACGGGAACGATTCCGGATTGTTTTAATGGGTTTAAGGATTTACT-G 642
Query 703 ATCTTGGATTTGAGCCGCAACTCTT-TCTCAGGGACATTGCCTACATCTTTTGGAGATTT 761
||||||||| |||| || |||| | ||||||||||||||||| | || ||||||| |
Sbjct 643 ATCTTGGATATGAGTCGGAACT-TAATCTCAGGGACATTGCCTTCGTCCATTGGAGAGAT 701
Query 762 GGTTTCATTGCTCAAGCTTGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGA 821
|||||||||||| |||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 702 GGTTTCATTGCTTAAGCTTGACCTAAGCAATAACCACTTAGAAGGCAAGTTACCTCAAGA 761
Query 822 ACTAGGATTTTTGAAGAATTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGG 881
| | || |||||||||||| ||||||| ||||| || |||||||||| | ||||||| ||
Sbjct 762 AATCGGGTTTTTGAAGAATCTGACACTGTTGGATCTTAGGAACAACATAATCTCTGGAGG 821
Query 882 GCTGTCC-AAGAATATTGAAAATATCCAATCTCTAACGGAA-TTAGTTTTATCTAAC-AA 938
| ||| | || || | | ||| || | |||| ||||||| || |||||||| | ||
Sbjct 822 GTTGTTCGAA-AACGTCGTAAAGATTCGATCTTTAACGGATCTT-GTTTTATC-AGGGAA 878
Query 939 TCCAATGGGT-GAAGAGGATATGGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGT-A 996
|||||||| | || || ||| |||||| ||| |||| ||| ||| |||||||||| |
Sbjct 879 CCCAATGGGCAGT-GATGACATGATGGGAATAAAGTGGGAGAATATGGGCAATTTGGTCA 937
Query 997 GTTTTGGA-CTTATCCAAA-ATGGGTTTGAGAGGTGAGATTCCTACAAGTCTAACCAACC 1054
||||||| || || ||| |||||||| ||||||||||||||| | || |||| ||
Sbjct 938 -TTTTGGATCTG-TC-AAAGATGGGTTTAAGAGGTGAGATTCCTTTAGGTTTAAC-AAGT 993
Query 1055 T-GAAGAGGTTAAGGTTTCTTGGTCTGAACAACAACAATCTAACCGGTTTTGTTCCATCG 1113
| ||| || || |||||||||||||| ||| |||||||| ||||||| ||| ||||||
Sbjct 994 TTGAAAAGATTGAGGTTTCTTGGTCTCAACGACAACAATTTAACCGGCACTGTCCCATCG 1053
Query 1114 AAGAAG-CTTGA-AGCTTTGCCTTGCCTTGGTGCTTTATACATCAATGGAAACAACCTAA 1171
| |||| || || | | |||||||| ||||||||| | ||||||||||||||||| |||
Sbjct 1054 A-GAAGGCTCGAGA-CATTGCCTTGTCTTGGTGCTCTCTACATCAATGGAAACAATCTAT 1111
Query 1172 CAGGTGAGCTTAGA-TTCTCTACAAAGTTCTATGAGAAGATGGGAA-GAAGATTTAAAGC 1229
|||| |||||| || ||||| | ||||||||||||||||||||||| || ||||||| ||
Sbjct 1112 CAGGAGAGCTT-GAATTCTCAAGAAAGTTCTATGAGAAGATGGGAACGA-GATTTAAGGC 1169
Query 1230 TTCAAAGAATCCAAATCTGTGTCA 1253
|||||||||||||||||| |||||
Sbjct 1170 TTCAAAGAATCCAAATCTTTGTCA 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5