BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13245.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920195 jgi|Araly1|920195|scaffold_101476.1                        239    2e-62


> Ahg920195 jgi|Araly1|920195|scaffold_101476.1
Length=228

 Score =  239 bits (129),  Expect = 2e-62
 Identities = 137/141 (97%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  73   ATCGATATATCAAAGATGAAGATGGGAGGTTCAAAGAGAAGAGTATCGAGCAAAGGACTT  132
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  67   ATCGATATATCGAAGATGAAGATGGGAGGTTCAAAGAGAAGAGTATCGAGTAAAGGACTT  126

Query  133  GGAGCTGTTCTTAAAGAACAAAGAGCTAAGCTATACATCATTCGAAGATGTGTCGTCATG  192
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  127  GGAGCTGTTCTTAAAGAACAAAGAGCTAAGCTTTACATCATTCGAAGATGTGTCGTCATG  186

Query  193  CTTCTTTGTTGGCACGATTGA  213
            || ||||||||||||||||||
Sbjct  187  CTACTTTGTTGGCACGATTGA  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5