BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13250.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471480 jgi|Araly1|471480|fgenesh2_kg.1__1434__AT1G13250.1 1770 0.0
> Ahg471480 jgi|Araly1|471480|fgenesh2_kg.1__1434__AT1G13250.1
Length=1361
Score = 1770 bits (958), Expect = 0.0
Identities = 1178/1279 (92%), Gaps = 35/1279 (3%)
Strand=Plus/Plus
Query 47 CACAGACCTaaaaaaaTGTCTTCTCTGCGTTTGCGTTTATGTCTTCTTCTACTCTTACCT 106
|||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 13 CACAGA-CT--AAAAATGTCTTCACTGCGTTTGCGTTTATGTCTTCTCCTACTCTTACCA 69
Query 107 ATCACAATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCGCGTTTCGTGAAGCTCCG 166
|| | |||||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 70 ATTGCGATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCACATTTCGAGAAGCTCCG 129
Query 167 GCGTTTCGAAACGGCAGAGAATGCTCCAAAACGA-CATGGAT-ACCTTCGGATCACGAAC 224
|||||||||||||||||||||||||||| ||| | ||||| | ||| ||||||| |||||
Sbjct 130 GCGTTTCGAAACGGCAGAGAATGCTCCAGAAC-AGCATGG-TCACCATCGGATCGCGAAC 187
Query 225 ACAACCCATCAATCATCCACATCGCTATGACTCTCGACGCAATTTACCTCCGTGGCTCAG 284
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 188 ACAATCCTTCAATCATCCACATCGCTATGACTCTCGACGCCATTTACCTCCGTGGCTCTG 247
Query 285 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACATCGTTTTCCACT 344
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 248 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACGTCGTTTTCCACT 307
Query 345 TCATCGCCACTCACCGTCGCAGCGCCGATCTCCGCCGCATAATCTCCTCAACATTCCCAT 404
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 308 TCATCGCAACTCACCGTCGCAGCGCCGATCTCCGCCGCATTATCTCCTCAACATTCCCTT 367
Query 405 ACCTAACCTACCACATTTACCATTTTGACCCTAACCTCGTCCGCAGCAAAATATCTTCCT 464
||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 368 ACCTAACCTACCAAATTTACCATTTTGACCCTAATCTCGTCCGTAGCAAAATCTCTTCCT 427
Query 465 CTATTCGTCGTGCTTTAGACCAACCGTTAAACTACGCTCGGATCTACCTCGCCGATCTCC 524
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 428 CGATTCGTCGTGCTTTAGACCAACCTTTAAACTACGCACGGATCTACCTCGCCGATCTCC 487
Query 525 TCCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTAGTCGTCGATGACG 584
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 488 TTCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTTGTCGTCGACGACG 547
Query 585 TGGCTAAACTCTGGAGAATCGATCTACGTCGGCACGTCGTCGGAGCTCCGGAGTACTGTC 644
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 548 TGGCAAAACTCTGGAGAATCGATCTACGTCGTCACGTCGTCGGAGCTCCGGAGTACTGTC 607
Query 645 ACGCGAATTTCACTAACTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTACAAATCGG 704
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct 608 ACGCGAACTTCACTAATTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTTCAAAGCGG 667
Query 705 CGTTGAAA-GATAGGAAACCGTGTTATTTCAACACCGGAGTGATGGTGATTGATCTCGGA 763
|||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 668 CGTTGAAAGGA-AGGAGACCGTGTTATTTCAACACCGGCGTGATGGTGATTGATCTCGGA 726
Query 764 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTAGAGACATGGATGAGGATTCAAAAACGA 823
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 727 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTTGAGACATGGATGAGGATTCAAAAACGA 786
Query 824 CATCGTATTTACGAATTGGGATCTTTGCCTCCGTTTCTGCTCGTTTTCGCCGGAGATGTT 883
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 787 CATCGTATTTATGAATTGGGATCTTTGCCTCCGTTTCTGCTTGTATTCGCCGGAGATGTT 846
Query 884 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAAGGACTT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 847 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAGGGGCTG 906
Query 944 TGCCGGAATTTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 1003
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TGCCGGAATCTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 966
Query 1004 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1026
Query 1064 TTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTAACATCGGACGGTGGAGGAA 1123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1027 CTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTCACATCGGACGGTGG----- 1081
Query 1124 GGCACGACCGTGTTTTGCTGACGTGGAATAAAGCTATTTTGATCGGTCG-TAATAAA-TA 1181
|||||||||| ||||||| ||||||| ||| ||||| || ||||||| ||
Sbjct 1082 ----------TGTTTTGCTGGCGTGGAAGAAAGCTAATTTAATCGG-CGGTAATAAAATA 1130
Query 1182 CGT-TGG-TCAAGCCACGTGCCAGATGATTGAAGAGGTGGTAGGTTTTGATCGGACGGTG 1239
|| ||| | |||||||||| |||||||| ||||||||||| ||| |||||| |||||||
Sbjct 1131 CGCGTGGGTGAAGCCACGTGGCAGATGATCGAAGAGGTGGTCGGTATTGATCCGACGGTG 1190
Query 1240 TATAACCATTCATGTGATAA--AG-AATTCCCAGGCCAAGTGTAATCGAAAAGAAGAAAG 1296
|||||||||||||||||||| | |||| | | |||||||||||||||||||||
Sbjct 1191 TATAACCATTCATGTGATAATTATTAATTTTTT--C-AGGTGTAATCGAAAAGAAGAAAG 1247
Query 1297 TGAACTAGAAGAGTTAAGA 1315
||||| |||||||||||||
Sbjct 1248 TGAACGAGAAGAGTTAAGA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5