BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13250.1 Length=1441 Score E Sequences producing significant alignments: (Bits) Value Ahg471480 jgi|Araly1|471480|fgenesh2_kg.1__1434__AT1G13250.1 1770 0.0 > Ahg471480 jgi|Araly1|471480|fgenesh2_kg.1__1434__AT1G13250.1 Length=1361 Score = 1770 bits (958), Expect = 0.0 Identities = 1178/1279 (92%), Gaps = 35/1279 (3%) Strand=Plus/Plus Query 47 CACAGACCTaaaaaaaTGTCTTCTCTGCGTTTGCGTTTATGTCTTCTTCTACTCTTACCT 106 |||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 13 CACAGA-CT--AAAAATGTCTTCACTGCGTTTGCGTTTATGTCTTCTCCTACTCTTACCA 69 Query 107 ATCACAATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCGCGTTTCGTGAAGCTCCG 166 || | |||||||||||||||||||||||||||||||||||| | ||||| ||||||||| Sbjct 70 ATTGCGATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCACATTTCGAGAAGCTCCG 129 Query 167 GCGTTTCGAAACGGCAGAGAATGCTCCAAAACGA-CATGGAT-ACCTTCGGATCACGAAC 224 |||||||||||||||||||||||||||| ||| | ||||| | ||| ||||||| ||||| Sbjct 130 GCGTTTCGAAACGGCAGAGAATGCTCCAGAAC-AGCATGG-TCACCATCGGATCGCGAAC 187 Query 225 ACAACCCATCAATCATCCACATCGCTATGACTCTCGACGCAATTTACCTCCGTGGCTCAG 284 |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 188 ACAATCCTTCAATCATCCACATCGCTATGACTCTCGACGCCATTTACCTCCGTGGCTCTG 247 Query 285 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACATCGTTTTCCACT 344 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 248 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACGTCGTTTTCCACT 307 Query 345 TCATCGCCACTCACCGTCGCAGCGCCGATCTCCGCCGCATAATCTCCTCAACATTCCCAT 404 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 308 TCATCGCAACTCACCGTCGCAGCGCCGATCTCCGCCGCATTATCTCCTCAACATTCCCTT 367 Query 405 ACCTAACCTACCACATTTACCATTTTGACCCTAACCTCGTCCGCAGCAAAATATCTTCCT 464 ||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 368 ACCTAACCTACCAAATTTACCATTTTGACCCTAATCTCGTCCGTAGCAAAATCTCTTCCT 427 Query 465 CTATTCGTCGTGCTTTAGACCAACCGTTAAACTACGCTCGGATCTACCTCGCCGATCTCC 524 | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 428 CGATTCGTCGTGCTTTAGACCAACCTTTAAACTACGCACGGATCTACCTCGCCGATCTCC 487 Query 525 TCCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTAGTCGTCGATGACG 584 | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 488 TTCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTTGTCGTCGACGACG 547 Query 585 TGGCTAAACTCTGGAGAATCGATCTACGTCGGCACGTCGTCGGAGCTCCGGAGTACTGTC 644 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 548 TGGCAAAACTCTGGAGAATCGATCTACGTCGTCACGTCGTCGGAGCTCCGGAGTACTGTC 607 Query 645 ACGCGAATTTCACTAACTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTACAAATCGG 704 ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||| Sbjct 608 ACGCGAACTTCACTAATTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTTCAAAGCGG 667 Query 705 CGTTGAAA-GATAGGAAACCGTGTTATTTCAACACCGGAGTGATGGTGATTGATCTCGGA 763 |||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 668 CGTTGAAAGGA-AGGAGACCGTGTTATTTCAACACCGGCGTGATGGTGATTGATCTCGGA 726 Query 764 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTAGAGACATGGATGAGGATTCAAAAACGA 823 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 727 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTTGAGACATGGATGAGGATTCAAAAACGA 786 Query 824 CATCGTATTTACGAATTGGGATCTTTGCCTCCGTTTCTGCTCGTTTTCGCCGGAGATGTT 883 ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 787 CATCGTATTTATGAATTGGGATCTTTGCCTCCGTTTCTGCTTGTATTCGCCGGAGATGTT 846 Query 884 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAAGGACTT 943 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 847 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAGGGGCTG 906 Query 944 TGCCGGAATTTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 1003 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 TGCCGGAATCTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 966 Query 1004 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1026 Query 1064 TTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTAACATCGGACGGTGGAGGAA 1123 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1027 CTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTCACATCGGACGGTGG----- 1081 Query 1124 GGCACGACCGTGTTTTGCTGACGTGGAATAAAGCTATTTTGATCGGTCG-TAATAAA-TA 1181 |||||||||| ||||||| ||||||| ||| ||||| || ||||||| || Sbjct 1082 ----------TGTTTTGCTGGCGTGGAAGAAAGCTAATTTAATCGG-CGGTAATAAAATA 1130 Query 1182 CGT-TGG-TCAAGCCACGTGCCAGATGATTGAAGAGGTGGTAGGTTTTGATCGGACGGTG 1239 || ||| | |||||||||| |||||||| ||||||||||| ||| |||||| ||||||| Sbjct 1131 CGCGTGGGTGAAGCCACGTGGCAGATGATCGAAGAGGTGGTCGGTATTGATCCGACGGTG 1190 Query 1240 TATAACCATTCATGTGATAA--AG-AATTCCCAGGCCAAGTGTAATCGAAAAGAAGAAAG 1296 |||||||||||||||||||| | |||| | | ||||||||||||||||||||| Sbjct 1191 TATAACCATTCATGTGATAATTATTAATTTTTT--C-AGGTGTAATCGAAAAGAAGAAAG 1247 Query 1297 TGAACTAGAAGAGTTAAGA 1315 ||||| ||||||||||||| Sbjct 1248 TGAACGAGAAGAGTTAAGA 1266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53897696675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5