BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13260.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920198 jgi|Araly1|920198|scaffold_101479.1 1775 0.0
Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1 667 0.0
Ahg921660 jgi|Araly1|921660|scaffold_102941.1 316 2e-85
> Ahg920198 jgi|Araly1|920198|scaffold_101479.1
Length=1076
Score = 1775 bits (961), Expect = 0.0
Identities = 1037/1074 (97%), Gaps = 4/1074 (0%)
Strand=Plus/Plus
Query 202 aaaaaaaC-ACAGATTAAATGGAA-TCGAGTAGCGTTGATGAGAGTACTACAAGTACAGG 259
|||||||| | ||||||||||||| | ||||||||| || ||||||||||||||||||||
Sbjct 4 AAAAAAACTA-AGATTAAATGGAAGT-GAGTAGCGTAGACGAGAGTACTACAAGTACAGG 61
Query 260 TTCCATCTGTGAAACCCCGGCGATAACTCCGGCGAAAAAGTCGTCGGTAGGTAACTTATA 319
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTCCATCTGTGAAACTCCGACGATAACTCCGGCGAAAAAGTCGTCGGTAGGTAACTTATA 121
Query 320 CAGGATGGGAAGCGGATCAAGCGTTGTGTTAGATTCAGAGAACGGCGTAGAAGCTGAATC 379
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 CAGGATGGGAAGCGGATCAAGCGTGGTGTTAGATTCAGAGAACGGCGTAGAAGCTGAATC 181
Query 380 TAGGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAAGATGGGG 439
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 182 TAGGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAACCAAACGGAAGATGGGG 241
Query 440 AGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAGAAGACGA 499
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 AGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACATTCAACGAAGAAGACGA 301
Query 500 AGCCGCTCGTGCCTACGACGTCGCGGTTCACAGGTTCCGTCGCCGTGACGCCGTCACAAA 559
||| |||||| |||||||||| ||||||||| |||||||| | |||||||||||||||||
Sbjct 302 AGCTGCTCGTTCCTACGACGTGGCGGTTCACCGGTTCCGTGGTCGTGACGCCGTCACAAA 361
Query 560 TTTCAAAGACGTGAAGATGGACGAAGACGAGGTCGATTTCTTGAATTCTCATTCGAAATC 619
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 362 TTTTAAAGACGTGAAGATGGACGAAGACGAGGTCGAGTTCTTGAATTCTCATTCGAAATC 421
Query 620 TGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGTAAACG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGTAAACG 481
Query 680 GCGTCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACGTCGGGGTTGAGTAATGA 739
||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 482 GCGTCGTAACGGTAACGGAAACATGGTTAGGACGATGTTAACGTCGGGGTTGAGTAATGA 541
Query 740 TGGTGTTTCTACGACGGGGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGTAACGCC 799
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGTAACGCC 601
Query 800 AAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCAGAGAAACATTT 859
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 602 AAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCGGAGAAACACTT 661
Query 860 TCCGTTACCGTCAAGTAACGTTTCCGTGAAAGGAGTGTTGTTGAACTTTGAGGACGTTAA 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 TCCGTTACCGTCAAGTAACGTTTCCGTGAAAGGAGTGTTGTTGAACTTTGAGGATGTTAA 721
Query 920 CGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTATGTTTTGAC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTATGTTTTGAC 781
Query 980 TAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGTTT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 TAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGCTT 841
Query 1040 CAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAAGTCGAGATCCGGGTC 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAAGTCGAGATCCGGGTC 901
Query 1100 AGATTTAGATGCGGGTCGGGTTTTGAGATTGTTCGGAGTTAACATTTCACCGGAGAGTTC 1159
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGATTTAGAAACGGGTCGGGTTTTGAGATTGTTCGGAGTTAACATTTCACCGGAGAGTTC 961
Query 1160 AAGAAACGACGTCGTAGGAAACAAAAGAGTGAACGATACTGAGATGTTATCGTTGGTGTG 1219
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 962 CAGAAACGACGTCGTAGGGAACAAGAGAGTGAACGATACTGAGATGTTATCGTTGGTGTG 1021
Query 1220 TAGCAAGAAGCAACGCATCTTTCACGCCTCGTAACAACTCTTCTTCtttttttt 1273
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TAGTAAGAAGCAACGCATCTTTCACGCCTCGTAACAACTCTTCTTCTTTTTTTT 1075
> Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1
Length=1176
Score = 667 bits (361), Expect = 0.0
Identities = 692/849 (82%), Gaps = 34/849 (4%)
Strand=Plus/Plus
Query 316 TATACAGGATGGGAAGCGGATCAAGCGTTG-TGTTAGATTCAGAGAACGGCGTAGAAGCT 374
||||||| |||||||||||| ||||||| | | || |||||||||||||| || || ||
Sbjct 160 TATACAGAATGGGAAGCGGAACAAGCGTGGTTCTT-GATTCAGAGAACGGTGTCGAGGCA 218
Query 375 GAATCTAGGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAAGA 434
||||| || |||||||| || |||| || ||||||||| || || |||||||| ||||||
Sbjct 219 GAATCAAGAAAGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGA 278
Query 435 TGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAGAA 494
||||||||||||||||||||||||||||| ||||| ||||| || || ||||||||||||
Sbjct 279 TGGGGAGCTCAGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGAAGAA 338
Query 495 GACGAAGCCGCTCGTGCCTACGACGTCGCGGTTCACAGGTTCCGTCGCCGTGACGCCGTC 554
|||||||| |||||||| ||||||||||||| |||| | |||||| |||||||||||||
Sbjct 339 GACGAAGCAGCTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGTGACGCCGTT 398
Query 555 ACAAATTTCAAAGACGTGAAGATGGACGAAGACGAGGTCGATTTCTTGAATTCTCATTCG 614
|| ||||||||||| || | | ||||| |||||||| |||||||| || | ||||||
Sbjct 399 ACTAATTTCAAAGAAACGACGTTCGACGATGACGAGGTTGATTTCTTAAACGCACATTCG 458
Query 615 AAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGT 674
||||| |||||||| ||||||||||| ||||| ||||| || |||||||||||||| ||
Sbjct 459 AAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGAGCAAAGG 518
Query 675 AAACGGCGTCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACGTCGGGGTTGAGT 734
||||| ||||| ||||||||||||| ||| | ||| ||| | || || ||
Sbjct 519 AAACGTAACCGTAACGGTAACGGAAACAAGAC--G-ACGGAGTT----T-GG--TTCCGT 568
Query 735 AAT-GATGGTGTTTCTACGACGGGGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGT 793
| | ||| | || || |||||||||| | || ||||| ||||||||||||| ||||
Sbjct 569 TACCG-TGGCGGTTATA--ACGGGGTTTAAAACGTCGGAGTTACTGTTTGAGAAAACGGT 625
Query 794 AACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCAGAGAA 853
||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 626 AACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAA 685
Query 854 ACATTTTCCGTTACCGTCAAGTAA------CGTTTCCGTGAAAGG-AGTGTTGTTGAACT 906
||||||||||||||||| | |||| ||| ||||| ||||| | | ||||||| |
Sbjct 686 ACATTTTCCGTTACCGTTAGGTAATAATAACGTCTCCGTTAAAGGTA-TACTGTTGAA-T 743
Query 907 TT-GAGGACGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAG 965
|| || ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 744 TTCGAAGACGTTAACGGAAAAGTGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGTCAA 803
Query 966 AGTTATGTTTTGACTAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGA-ATCTACGTGCTGG 1024
|||||||| ||||| ||||||||||| || || ||||| ||||||| | || |||| ||
Sbjct 804 AGTTATGTGTTGACCAAAGGTTGGAGTAGATTTGTTAAAGAGAAGAGA-CTTTGTGCCGG 862
Query 1025 TGACGTGGTTAGTTTCAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAA 1084
||| || | ||||| | ||||||||||||||||||||| |||||| ||||| |||||
Sbjct 863 TGATTTGATCAGTTTTAAAAGATCTAACGGTCAGGATCAAAAGTTGTTTATTGGTTGGAA 922
Query 1085 GTCGA-----G-ATCCGGGTCAGATTTAGATGCGGGTCGGGTTTTGAGATTGTTCGGAGT 1138
|||| | ||||||||| ||| ||| | ||||||||| |||||||||| || ||
Sbjct 923 ATCGAAATTCGGATCCGGGTCGGATCAAGAAACAGGTCGGGTTGTGAGATTGTTTGGGGT 982
Query 1139 TAACATTTC 1147
| |||||||
Sbjct 983 TGACATTTC 991
> Ahg921660 jgi|Araly1|921660|scaffold_102941.1
Length=1120
Score = 316 bits (171), Expect = 2e-85
Identities = 590/779 (76%), Gaps = 81/779 (10%)
Strand=Plus/Plus
Query 318 TACAGGATGGGAA---GCGGATCAAGCGTTGTGTTAGATTCAGAGAACGGCGTAGAAG-C 373
||||| ||||||| ||||| ||||| || || |||| ||| |||||||| | || |
Sbjct 144 TACAGAATGGGAAGCGGCGGAAGTAGCGTCGTTTTGGATTTAGATAACGGCGTCG-AGAC 202
Query 374 TGAATCTA-GGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAA 432
|| || | ||||||| |||||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 203 CGAGTC-ACGGAAGCTCCCGTCGTCGAAATACAAAGGCGTTGTGCCTCAACCTAACGGAA 261
Query 433 GATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAG 492
||||||||||||||||||||||||| || ||||| || |||||||| || ||||||||||
Sbjct 262 GATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGAAG 321
Query 493 AAGACGAAGCCGCT-CGTGCCTACGACGTCGCGGTTCAC-AGGTTCCGTCGCCGTGACGC 550
|||| |||||||| | | | |||||| |||| | | | || |||||| ||||||||||
Sbjct 322 AAGAAGAAGCCGCGACTT-CTTACGACATCGCCGCT-AGGAGATTCCGTGGCCGTGACGC 379
Query 551 CGTCACAAATTTCAAAGACGTGAAG---ATGGA--CGAAGACGAGGTCGA-TTT-CTTGA 603
|||||| ||||||||| | | ||| ||||| ||||| ||| || ||| |||||
Sbjct 380 CGTCACTAATTTCAAAT-C-TCAAGTTGATGGAAACGAAGCCGAAA-CGGCTTTTCTTGA 436
Query 604 ATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGT 663
||||||| ||| |||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 437 CG-CTCATTCTAAAGCTGAGATCGTTGATATGTTGAGGAAACACACTTACGCCGATGAGT 495
Query 664 TAGAGCAGAGTAAACGGCG-TCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACG 722
| |||||||| |||||| | | || |||||| ||| || | ||| ||| |
Sbjct 496 TTGAGCAGAGCAAACGGAAAT--T--TGTTAACGGTAACG-GAA-A--ACGCTGTGGA-- 545
Query 723 TCGGGGTTGAGTAATG-ATGGTGTTTCTACGACGGGGTTT--AGATCGGCG-GAGGCACT 778
|||| | | | ||| | || |||||| |||| ||| || || |||| |
Sbjct 546 TCGGAGACG-GCGATGCACGGAA-----ACGACGCAGTTTTGAGAGCG-CGTGAGGTTTT 598
Query 779 GTTTGAGAA-AGCGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGA 837
||| ||||| | | || ||||| || ||||| |||||||| |||||||| || |||||||
Sbjct 599 GTTCGAGAAGA-CTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGATACCGA 657
Query 838 AACATCACGCAGAGAAACATTTTCCGTTACCGTC-A--A-G-------T----A--A--C 878
|||| ||||| ||||| ||||||||||||||| | | | | | | | |
Sbjct 658 AACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACGACGGCGATGGGGATGAGTC 717
Query 879 -GTTTCCGT-GAAAGGAGTGTTG-TTGAACTTTGAGGAC-GTTAAC-GGGAAAGTGTGGA 933
|| |||| |||||| || ||| || ||||| || ||| | ||| ||||||||||||
Sbjct 718 CGTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGACAG--AACAGGGAAAGTGTGGC 774
Query 934 GGTTCCGTTACTCGT-ATTGGAACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTGGAGC 992
||||||||||| || | |||||||| ||||||||||| || ||||| || || ||||||
Sbjct 775 GGTTCCGTTACA-GTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAGC 833
Query 993 AGGTTCGTTAAGGAGAAGAATCT-ACGTGCTGGTGACGTGGTT-AGTTTC-AGTAGATC 1048
|||||||||| ||||||||||| | | || ||||| |||||| | |||| || |||||
Sbjct 834 CGGTTCGTTAAAGAGAAGAATCTCA-GAGCCGGTGATGTGGTTTA-TTTCGAG-AGATC 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5