BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13270.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471483 jgi|Araly1|471483|fgenesh2_kg.1__1437__AT1G13270.1 2037 0.0
> Ahg471483 jgi|Araly1|471483|fgenesh2_kg.1__1437__AT1G13270.1
Length=1312
Score = 2037 bits (1103), Expect = 0.0
Identities = 1247/1316 (95%), Gaps = 12/1316 (1%)
Strand=Plus/Plus
Query 6 AAATTTTGATATTTTGGGTTTTAGCAGTGAAGTTTGCGAAAATGGCGTCTTCGGTTTTTC 65
|||||||||| ||||||| || |||||||||||||||||||||||||||||| ||| |||
Sbjct 1 AAATTTTGATGTTTTGGG-TTAAGCAGTGAAGTTTGCGAAAATGGCGTCTTCAGTTATTC 59
Query 66 TATCCAGTTTCTCGTCATCGTCTTCTTTGCAACTCTGC-TCTTCCTTTCACGGCGAGTAC 124
|||||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |||
Sbjct 60 TATCCAGTTTCTCGTCATCGTCTTCTTTGCAACT-TTCTTCTTCCTTTAACGGCGACTAC 118
Query 125 TTAGCTCCGTCGAGATGCTTTCTCGGAGCTCCGGTCACTTCCTCTTCTTTATCACTCTCC 184
||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 119 TTAGCGCCGTCGAGGTGCTTTATCGGAGCTCCGGTCACTTCCTCTTCTTTATCAATCTCC 178
Query 185 GGTAAGAAGAACTCATATTCTCCGAGACAGTTCCATGTTTCTGCCAAGAAAGTTTCTGGG 244
||||||||||||||||||||||||||| | ||| | |||||||||| |||||||||||
Sbjct 179 GGTAAGAAGAACTCATATTCTCCGAGAAAATTCTACATTTCTGCCAAAAAAGTTTCTGGA 238
Query 245 TTAGAGGAAGCCATTAGAATCAGAAAAATGAGAGAGCTTGAAACTAAATCAAAAGTTAGG 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 TTAGAGGAAGCCATTAGAATCAGAAAAATGAGAGAGCTTGAAACTAAATCAAAAGTGAGG 298
Query 305 AGAAATCCACCATTAAGACGTGGAAGAGTATCGCCTCGTCTTCTTGTACCTGATCACATT 364
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 299 AGAAATCCACCATTAAGACGAGGAAGAGTATCACCTCGTCTCCTTGTACCTGATCACATT 358
Query 365 CCAAGGCCTCCTTATGTTGAGTCTGGTGTATTACCGGATATATCAAGTGAGTTCCAGATT 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 CCAAGGCCTCCATATGTTGAGTCTGGTGTATTACCGGATATATCAAGTGAGTTTCAGATT 418
Query 425 CCTGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCTTGCGAGCTTGCTGCTCGGGTTTTA 484
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 419 CCTGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCCTGCGAGCTCGCTGCTCGGGTTTTA 478
Query 485 AACTATGCTGGAACTTTGGTTAAGCCATCTGTTACGACTAATGAAATCGATAAAGCTGTG 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 AACTATGCTGGAACTTTGGTTAAGCCATCTGTTACGACTAATGAAATCGACAAAGCTGTG 538
Query 545 CATGATATGATTATTGAAGCTGGTGCTTATCCTTCACCTCTTGGATATGGTGGATTTCCT 604
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CATGATATGATTATTGAAGCTGGTGGTTATCCTTCACCTCTTGGATATGGTGGATTTCCT 598
Query 605 AAAAGTGTGTGTACTTCAGTTAATGAGTGTATGTGTCACGGAATACCAGATTCTCGCCAG 664
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 AAAAGTGTGTGTACATCAGTTAATGAGTGTATGTGTCACGGAATACCGGATTCTCGCCAG 658
Query 665 CTACAGAGCGGGGATATAATCAACATCGATGTCACGGTTTACTTGGATGGTTACCATGGA 724
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTACAGAGCGGGGATATAATAAACATCGATGTCACGGTTTACTTGGATGGTTACCATGGA 718
Query 725 GATACGTCGAGAACTTTCTTCTGTGGAGAAGTTGACGAAGGTTTCAAACGACTTGTGAAG 784
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 GATACATCGAAAACTTTCTTCTGCGGAGAAGTTGACGAAGGTTTCAAACGACTTGTGAAG 778
Query 785 GTTACGGAAGAATGTTTGGAGAGAGGTATTGCAGTTTGTAAAGACGGAGCAAGCTTCAAG 844
|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 779 GTTACGGAAGAATGTTTGGAGAAAGGTATTGCCGTTTGTAAAGATGGAGCAAGCTTCAAG 838
Query 845 AAAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTTCGGCTACAACGTTGTGGAGCGG 904
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 AAAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTACGGCTACAACGTTGTGGAGCGG 898
Query 905 TTTGTTGGGCATGGTGTTGGACCAGTATTCCACTCCGAACCTCTTATATATCATTACCGA 964
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 TTTGTTGGGCATGGTGTTGGACCAATATTCCACTCCGAACCTCTTATATATCATTACCGA 958
Query 965 AATGATGAGCCTGGACTAATGGTTGAGGGACAGACATTCACAATTGAACCGATTCTCACG 1024
|||||||||||||| || |||||||||||||| || |||||||||||||||||||| |||
Sbjct 959 AATGATGAGCCTGGGCTTATGGTTGAGGGACAAACTTTCACAATTGAACCGATTCTGACG 1018
Query 1025 ATTGGAACCACAGAATGTGTAACATGGCCAGACAACTGGACTACTCTGACAGCAGATGGT 1084
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 ATTGGAACCACGGAATGTGTAACATGGCCAGACAACTGGACCACTCTGACAGCAGATGGT 1078
Query 1085 GGCGTCGCTGCTCAGTTTGAGCATACCATTCTGATTACTAGAACTGGTTCAGAGATTCTT 1144
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 GGCGTCGCTGCACAGTTTGAGCATACCATTCTGATTACCAGAACTGGTTCAGAGATTCTT 1138
Query 1145 ACCAAATGCTAAAACT-ATTCACATTGATCATTTCCATTTCACCTT--TTAT--TTGCTG 1199
|| ||||||| || || ||||||||||||||||| ||||| ||||| || | ||||||
Sbjct 1139 ACTAAATGCTGAA-CTTATTCACATTGATCATTTTCATTTTACCTTAATTTTAATTGCTG 1197
Query 1200 ATCATTTAAGGTCCATAGTATAAATTCATTATCTTTGAGACCATAGTCT-AACAATTTGT 1258
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 CTCCTTTAAGGTCCATAGTATAAATTCATTATCTTTGAGACCATAGTCTTAACAATTTGT 1257
Query 1259 GTTAGTGCCATCTTTTAAGATCTCAAGATTAGTTTGCTATT-AGAAATTTTCCCAC 1313
|||||||||||| |||||||||||||||||||||||||||| | |||||| |||||
Sbjct 1258 GTTAGTGCCATCGTTTAAGATCTCAAGATTAGTTTGCTATTTA-AAATTTCCCCAC 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5