BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13280.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334627 jgi|Araly1|334627|fgenesh1_pg.C_scaffold_1001192 1181 0.0
Ahg920201 jgi|Araly1|920201|scaffold_101482.1 69.4 6e-11
> Ahg334627 jgi|Araly1|334627|fgenesh1_pg.C_scaffold_1001192
Length=759
Score = 1181 bits (639), Expect = 0.0
Identities = 719/759 (95%), Gaps = 0/759 (0%)
Strand=Plus/Plus
Query 177 ATGGCTTCTTCTGCTGCTGCATCGATCTCTATGATAACTCTAAGGAACCTCTCTCGCAAT 236
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTTCTGCTGCTGCATCGATCTCTTTGATAACTCTAAGGAACCTCTCTCGCAAT 60
Query 237 CATCAATCTCACCAAAGCACTTTTCTCGGTTTCTCTAGATCCTTCCATAACCAAAGGATC 296
||||||||||||| |||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 61 CATCAATCTCACCTAAGCTCTCTTCTTGGTTTCTCTAGATCCTTCCATAACCAAAGGATC 120
Query 297 TCATCTAACAGTCCAGGTCTCTCCACACGAGCAAGATCCACCACTTCCTCCACTGGAGGT 356
||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 121 TCATCTAACGGTCCAGGTTTCTCCAAACGAGCAAGATCCACCACTTCCTCCACTAGAGGT 180
Query 357 TTCTTCAGAACCATTTGCAGCAGCAGTAGCAATGACTACTCCAGACCAACTAAGATCCAA 416
|||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||
Sbjct 181 TTCTTCAGAACCATTTGCAGCAGCAGCAACAGCGACAACTCCAGACCAACTAAGATCCAA 240
Query 417 GAGCTTAACGTCTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTTTAAAACTA 476
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GAGCTTAACGTGTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTCTAAAACTC 300
Query 477 GGGAAAAAACCAGATCAGCTTTGTCTCGGAGATCTTGTCCCCTTCACAAACAAACTCTAC 536
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GGAAAAAAACCAGATCAGCTTTGTCTCGGCGATCTTGTCCCCTTCACAAACAAACTCTAC 360
Query 537 ACAGGAGATCTCACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACAT 596
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCGGAGATCTTACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACAT 420
Query 597 GTTCCAGAGAAGAAAGGTGATCGCTTTGAAGCTTCTTACAGTTTCTACTTCGGAGATTAT 656
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 421 GTTCCAGAGAAGAAAGGTGATCGTTTTGAAGCCTCTTACAGTTTCTACTTCGGAGATTAT 480
Query 657 GGTCACATATCAGTTCAAGGACCTTATCTCACTTACGAGGACACGTTTCTTGCTATCACC 716
|| |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 481 GGCCACATATCCGTACAAGGACCTTATCTCACTTATGAGGATACGTTTCTTGCTATCACC 540
Query 717 GGTGGCTCCGGCGTGTTTGAAGGAGCTTATGGACAGGTCAAGCTTCGTCAGCTTGTGTAT 776
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 541 GGTGGCTCCGGCGTCTTTGAAGGAGCGTACGGACAGGTCAAGCTTCGTCAGCTTGTGTAT 600
Query 777 CCTACGAAGCTGTTTTACACTTTCTACTTGAAAGGTGTTGCTGCTGATTTACCTGTGGAG 836
|| |||||| ||||||||||||| |||||||||||||||| ||||||||| || ||||||
Sbjct 601 CCAACGAAGTTGTTTTACACTTTTTACTTGAAAGGTGTTGTTGCTGATTTGCCGGTGGAG 660
Query 837 CTTACCGGAAAACATGTTGAGCCGTCGAAGGAAGTGAAACCGGCGGCTGAAGCTCAGGCG 896
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 661 CTTACCGGGAAACATGTTGAGCCGTCGAAGGATGTGAAACCGGCGGCGGAAGCTCAGGCG 720
Query 897 ACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA 935
|||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA 759
> Ahg920201 jgi|Araly1|920201|scaffold_101482.1
Length=204
Score = 69.4 bits (37), Expect = 6e-11
Identities = 109/140 (78%), Gaps = 19/140 (14%)
Strand=Plus/Minus
Query 977 GGCTGTTGTTCATTGTGTTTACATTTTAATAATGGGCCTAAATAATGAGC---CT--T-T 1030
||||| | ||||||||||| ||||||||||||||||||| || || || | | |
Sbjct 204 GGCTG-T-TTCATTGTGTTAACATTTTAATAATGGGCCTTTGTATTGGGCTTTTTAATGT 147
Query 1031 GTA-T-T-GGGCCGTTCTCGTAA-GCGTAAT-GTGTCCCGTCCCTATAAGCTGGATTTAA 1085
||| | | | |||| ||||||| |||| || |||| | | | | |||||||||||||
Sbjct 146 GTACTATAGAGCCG-ACTCGTAATGCGT-ATAATGTCTC-T-AC-A-AAGCTGGATTTAA 93
Query 1086 GCGCGTGAACTCCACCTTCC 1105
||||||||||||||||||||
Sbjct 92 GCGCGTGAACTCCACCTTCC 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5