BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13290.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471484 jgi|Araly1|471484|fgenesh2_kg.1__1438__AT1G13290.1 1893 0.0
> Ahg471484 jgi|Araly1|471484|fgenesh2_kg.1__1438__AT1G13290.1
Length=1220
Score = 1893 bits (1025), Expect = 0.0
Identities = 1163/1227 (95%), Gaps = 19/1227 (2%)
Strand=Plus/Plus
Query 1 AGTTACCAGTTCGTCCAGCCTCCATTGTCTTTCTCCACCATTTCCTCAAAACCCCAtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTACCAGTTCGTCCAGCCTCCATTGTCTTTCTCCACCATTTCCTCAAAACCCCA---- 56
Query 61 tctctctctctcatctctctttctctctACTCAATGTATAATAATAACCAATATAGCTTC 120
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 57 TATCTCTCTCTCATCTCTCTTTCTATCTACTCAATGTATAATAATAACCAATATAGCTTC 116
Query 121 TCCGGTGACGAAGACTCCGTCGTCCTCAGCCTTGGACCTCCTGGCCAACAATACCCTAGC 180
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 117 TCCGGTGACGAAGACTCCGTCGTCCTCAGACTTGGACCTCCTGGCCAACCATACCCTAGC 176
Query 181 CATAACAAACCTACCAGTACTAAACCTTCTTCTGATCATGAGTTTAATCACCCATTAACA 240
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CATATCAAACCCACCAGTACTAAACCTTCTTCTGATCATGAGTTTAATCACCCATTAACA 236
Query 241 AACCCTAATGGTGTTACCGTTGCTCTTCATATCGGTCCTCCGAGTTCCGACAAAGAAACC 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AACCCTAATGGCGTCACCGTTGCTCTTCATATCGGTCCTCCGAGTTCCGACAAAGAAACC 296
Query 301 CTTAGCGGCGGGAACAACCAAGAGGGTTTAACGGCGAGGCAGGGACAGTATTGGATCCCT 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTTACCGGCGGGAACAACCAAGAGGGTTTAACGGCGAGGCAGGGACAGTATTGGATCCCT 356
Query 361 TCACTTTCGCAGATCCTTGTCGGTCCCACTCAGTTCTCTTGTTCTGTCTGTAACAAAACT 420
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCGCTTTCTCAGATCCTTGTTGGTCCCACTCAGTTCTCTTGTTCTGTCTGTAACAAAACT 416
Query 421 TTCAACCGCTTCAACAACATGCAGATGCATATGTGGGGTCATGGTTCGCAATACCGAAAA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTAACCGCTTCAACAACATGCAGATGCATATGTGGGGTCATGGTTCGCAATACCGAAAA 476
Query 481 GGCCCAGAGTCGCTCAGAGGGACGAAGTCGTCATCTTCGATACTAAGGCTGCCATGTTAC 540
|| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 GGTCCAGAATCGCTCCGTGGGACGAAATCGTCATCTTCGATACTAAGGCTGCCATGTTAC 536
Query 541 TGTTGTGCTGAAGGTTGTAAGAACAACATAGACCATCCAAGATCAAAGCCTCTCAAAGAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGTTGTGCTGAAGGTTGTAAGAACAACATAGACCATCCAAGATCAAAGCCTCTCAAAGAC 596
Query 601 TTTAGAACGCTTCAAACGCATTACAAGCGGAAGCACGGAGCAAAACCTTTTCGTTGCCGC 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTTAGAACGCTCCAAACGCATTACAAGCGGAAGCACGGAGCAAAACCTTTTCGTTGCCGC 656
Query 661 AAGAAATGTGAAAAAACGTTTGCGGTGAGAGGCGATTGGAGAACGCATGAGAAAAATTGT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAGAAGTGTGAAAAAACGTTTGCGGTGAGAGGCGATTGGAGAACGCATGAGAAAAATTGT 716
Query 721 GGGAAGTTGTGGTTTTGCGTTTGCGGGTCAGATTTTAAGCATAAGAGGTCACTTAAGGAT 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 GGGAAGTTGTGGTTTTGCGTTTGTGGGTCAGATTTTAAGCATAAGAGGTCACTTAAGGAT 776
Query 781 CACGTTAGGGCTTTCGGTGATGGTCATGCGGCTCACACTGTAAGTGATCGGGTTGTAGGC 840
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 777 CACGTTAAGGCTTTCGGTGATGGTCATGCGGCTCACACTGTGGGTGATCGTGTTGTAGCC 836
Query 841 ATTGGGGACGCagatgaagatgatgaggaggaggaagaagaggaagaagatgatg-t-a- 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 837 ATTGGAGACGCAGATGAAGATGATGAGGAGGAGGAAGAAGAGGAAGAAGATGATGATGAT 896
Query 898 gaagaagaagatgctcatgaagaaaatgttcgtggagagaagaaCTATGGGATTAGATAT 957
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAAGAAGAAGATGCTCACGAAGAAAATGTTCGTGGAGAGAAGAACTATGGGATTAGATAT 956
Query 958 GATCACTTTCGTCGTTATGGTCAGATTTCTGATGACAATTACTAAATAAATGGGACATTT 1017
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 957 GATCACTTTCGTCGTTATGGTCAGATTTCTGATGACAATTACTAACTAAATGGGTCATAT 1016
Query 1018 TTATGATCGATGG--G--TACTATTAGGGTTTATCTAAGTGAGGTATGTTTGATATGTAT 1073
||||||||||||| | | ||||||||||||| ||||||||| | | |||||||||||
Sbjct 1017 TTATGATCGATGGCCGGGTGTTATTAGGGTTTATGTAAGTGAGGCA-GCTTGATATGTAT 1075
Query 1074 -T-T--ACCTCTTCGTCAAGTTAGCTAGTGAGTCTTAA-AGTAACCTTTTCCGAAAAATA 1128
| | |||||||||||| |||||||||||| | | || || ||||||||||||||| ||
Sbjct 1076 GTATTTACCTCTTCGTCACGTTAGCTAGTGAATGT-AAGAGCAACCTTTTCCGAAAA-TA 1133
Query 1129 TATGTAGTGGTGGCTTTGGATTATATAAGTGCCTCTAACGTTGTCTCCAACAAGCAATTT 1188
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1134 TATGTAGTGGTGGCTTTGGATTATATAAGTGCTTCTAATGTTGTCTCCAACAAACAATTT 1193
Query 1189 CTGCATTTTTGGTAAATCTTCAGACCC 1215
|||||||| |||||||||||| |||||
Sbjct 1194 CTGCATTTCTGGTAAATCTTCTGACCC 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5