BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13300.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920209 jgi|Araly1|920209|scaffold_101490.1 1692 0.0
Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 145 9e-34
Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 139 4e-32
Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 99.0 7e-20
> Ahg920209 jgi|Araly1|920209|scaffold_101490.1
Length=1081
Score = 1692 bits (916), Expect = 0.0
Identities = 1031/1085 (95%), Gaps = 13/1085 (1%)
Strand=Plus/Plus
Query 66 TAAGTCCCTAAAGTATCATCATGATTAAAAAGTTCAGCAATATGGATTACAACCAGAAAC 125
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAGTCCCTAAAGCATCATCATGATTAAAAAGTTCAGCAATATGGATTACAACCAGAAAC 60
Query 126 GAGAGAGATGTGGGCAATACATCGAAGCCCTCGAAGAGGAACGTCGCAAGATTCATGTAT 185
| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GGGAGAGATGTGGGAAATACATCGAAGCCCTCGAAGAGGAACGTCGAAAGATTCATGTAT 120
Query 186 TTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGCGATCGAGGCATGTAAGA 245
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 121 TTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGCCATCGAGGCATGTAAAA 180
Query 246 GGGAGTTACCGGAGATGACGACGGAGAATATGTACGGACAACCAGAGTGCTCGGAGCAGA 305
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 181 GGGAGATACCGGAGATGACGACGGATAATGTGTACGGACAACCAGAGTGCTCGGAGCAGA 240
Query 306 CGACCGGAGAATGTGGGCCGGTCTTGGAGCAGTTTCTAACTATTAAAGATTCATCGACAT 365
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 241 CGACCGGAGAATGTGGGCCGGTCTTGGAGCAGTTTCTAACAATTAAAGATTCATCGACCT 300
Query 366 CCAACGAAGAAGAAGATGAAGAATTCGACGATGAGCATGGAAATCACGATCCAGACAATG 425
|||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 301 CCAACGAAGAAGTAGATGAAGAGTTCGACGATGAGCACGGAAATCACGATCCGGACAATG 360
Query 426 ATTCCGAGGACAAGAACACGAAATCTGATTGGCTTAAGTCTGTTCAACTCTGGAATCAAC 485
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 361 GCTCCGAGGACAAGAACACGAAATCTGATTGGCTTAAGTCTGTTCAACTGTGGAACCAAC 420
Query 486 CCGACCACCCACTTCTTCCAAAAGAGGAAAGGTTGCAGCAGGAGAC------GA---TGA 536
||||||| |||||||||||||||||| |||||||||||||||| || |||
Sbjct 421 CCGACCA---TCTTCTTCCAAAAGAGGAACGGTTGCAGCAGGAGACGATGGAGACGGTGA 477
Query 537 CAAGAGATGAGAGTATGAGAAAAGATCCGATGGTGAACGGTGGCgaagggaggaagagag 596
||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 478 CAAGAGACGAGAGTATGAGAAAGGATCCGATGGTGAACGGTTGCGAAGGAAGGAAGAGAG 537
Query 597 aggcggagaaagacggaggaggagggagaaagcaaagaaggTGTTGGTCGTCGCAATTGC 656
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 538 AGGCGGAGAAAGACGGAGGAGGAGGGAGAAAGCAAAGAAGGTGTTGGTCATCGCAGTTGC 597
Query 657 ATAGACGCTTCTTGAACGCTCTTCAACACTTAGGTGGACCTCATGTAGCTACGCCAAAGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAGACGCTTCTTGAACGCTCTTCAACACTTAGGTGGACCTCATGTAGCTACGCCAAAGC 657
Query 717 AAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTAC 776
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 658 AAATCAGGGAGTTAATGAAAGTTGATGGATTAACCAATGATGAAGTTAAAAGCCATTTAC 717
Query 777 AGAAATATAGACTGCATACAAGAAGGCCACGCCAAACAGTCCCTAACAACGGAAACTCTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGAAATATAGACTGCATACAAGAAGGCCACGCCAAACAGTCCCTAACAACGGAAACTCTC 777
Query 837 AAACGCAACATTTCGTAGTCGTCGGTGGTTTATGGGTACCACAATCGGACTACTCTACGG 896
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 778 AAACGCAACATTTCGTAGTCGTCGGAGGTTTATGGGTCCCACAATCGGACTACTCTACGG 837
Query 897 GCAAGACTACCGGAGGAGCCACCACCAGCAGTACCACCACAACCACCGGCATCTATGGAA 956
||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 838 GCAAGACCACCGGAGGAGCCACCACCAGCAGTACCACCACCACCACCGGGATCTATGGAG 897
Query 957 CCATGGCCGCACCGCCACCTCCACAATGGCCTAGCCATTCCAATTATAGACCGTCGATTA 1016
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 898 CCATGGCAGCACCGCCACCTCCACAATGGCCTAGCCATTCCAATTTTAGGCCGTCGATTA 957
Query 1017 TTGTGGACGAAGGATCGGGAAGTCATAGTGAAGGGGTCGTGGTCCGGTGTAGCTCGCCGG 1076
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 958 TTGTGGAAGAAGGATCGGGAAGTCATAGTGAAGGGGTTGTGGTCCGGTGTAGCTCGCCGG 1017
Query 1077 CGATGTCTTCTTCTACCCGTAATCATTACGTCAAGAATAATTAATTTGTTTTTACTGTAC 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 CGATGTCTTCTTCTACCCGTAATCATTACGTCAAGAATAATTAATTTGTTTTTACTGT-C 1076
Query 1137 TCTAA 1141
|||||
Sbjct 1077 TCTAA 1081
> Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1
Length=1432
Score = 145 bits (78), Expect = 9e-34
Identities = 151/186 (81%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 623 agaaagcaaagaaggTGTTGGTCGTCGCAATTGCATAGACGCTTCTTGAACGCTCTTCAA 682
||||| ||||| |||| |||||| || | || || | || ||||| ||||| |||||
Sbjct 865 AGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTAAACGCGCTTCAG 924
Query 683 CA-CTTAGGTGGACCTCATGTAGCTACGCC-AAAGCAAATCAGGGAGT-TTATGAAGGTT 739
|| ||| || ||| ||||||| |||||||| ||| || || || || | |||||| ||
Sbjct 925 CAGCTT-GGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGA-TCATATGAAAGTC 981
Query 740 GATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGA 799
||||| ||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 982 GATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACTTCACACAAGA 1041
Query 800 AGGCCA 805
||||||
Sbjct 1042 AGGCCA 1047
> Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706
Length=1023
Score = 139 bits (75), Expect = 4e-32
Identities = 149/184 (81%), Gaps = 8/184 (4%)
Strand=Plus/Plus
Query 626 aagcaaagaaggTGTTGGTCGTCGCAATTGCA-TAGACGCTTCTTGAACGCTCTTCAAC- 683
||||||||| | || |||||| || | || || || | |||||| |||| |||||||
Sbjct 625 AAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGA-GATTCTTGCACGCGCTTCAACA 683
Query 684 ACTTAGGTGGACCTCATGTAGCTACGCC-AAAGCAAATCAGGGAGT-TTATGAAGGTTGA 741
|||| |||||| | ||||| ||||| || ||| || || || || | | |||||||| ||
Sbjct 684 ACTT-GGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGA-TCTCATGAAGGTCGA 740
Query 742 TGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAAG 801
||| ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 741 TGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAG 800
Query 802 GCCA 805
|||
Sbjct 801 ACCA 804
> Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929
Length=477
Score = 99.0 bits (53), Expect = 7e-20
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 732 TGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGC 791
||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 170 TGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGC 229
Query 792 ATACAAGAAGGCCA 805
| |||||||| |||
Sbjct 230 ACACAAGAAGACCA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5