BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13310.1
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911122 jgi|Araly1|911122|Al_scaffold_0001_1376 1626 0.0
> Ahg911122 jgi|Araly1|911122|Al_scaffold_0001_1376
Length=1116
Score = 1626 bits (880), Expect = 0.0
Identities = 1051/1131 (93%), Gaps = 21/1131 (2%)
Strand=Plus/Plus
Query 133 ATGACGATGATGCAGTACCTAATTCCAGAACCAAAAACAAAAGAGATTTTGTACGAGAAA 192
|||||||||||||||||| ||||||||||||||||||| ||||||||| | | |||||||
Sbjct 1 ATGACGATGATGCAGTACGTAATTCCAGAACCAAAAACTAAAGAGATTGTATTCGAGAAA 60
Query 193 ACGTTACAAGCTGCTGGTCCAATTACTCTAGGAGAAGTTAAAGAGTTAACTTCTAAGCGT 252
||||| ||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||
Sbjct 61 ACGTTGCAAGCTGCTGGTCCAGTTACTCTAGAAGAAGTTAAAGACTTAACTTCGAAGCGT 120
Query 253 AAAATTATCGAAGAATCTGTAAACAAAACCAGCAAAGTCATTGATTCAACTACAAGAGAG 312
||||||||||||||||| |||||||||||||| ||||| | | || ||| | | |
Sbjct 121 AAAATTATCGAAGAATCAGTAAACAAAACCAGAAAAGT-A--G--TC-ACT-GATG-CA- 171
Query 313 A-TGACCAGAGGACTAACTTCTGCTTGTGAGCAGGATCTTCATAAACTTGGAGAATACCT 371
| | || | |||| |||||||||||||||| |||||||||||| ||||||| ||||| |
Sbjct 172 ACT-ACAATAGGATTAACTTCTGCTTGTGAAAAGGATCTTCATAGACTTGGACAATACAT 230
Query 372 TCCATTACTCTTTAACTTGGTGCATTACACTGATAAGATTAAACGGGTTTCGAATCTTAA 431
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 231 TCCGTTACTCTTTAACTTGGTTCATTACACCGATAAGATTAAGCGGGTTTCGAATCTTAA 290
Query 432 GATAAGATGGAGTAGTGGTTTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATT 491
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GATAAGATGGAGTAGTGGATTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATT 350
Query 492 CTTCCAAGTCGATAACATAATGTTCGAGTTTGGAATGGTTCTTTTCATTTACGCGGTTAA 551
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 351 CTTCCAAGTCGATAACATAATGTTCGAGCTTGGAATGGTTCTTTTCGTTTACGCAGTTAA 410
Query 552 GCTCCGCGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAGAAAGCGGTAGCAGTTTA 611
|||||| ||||||||||||||||||||||||||||||||||| ||| | ||| |||||||
Sbjct 411 GCTCCGGGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAAAAATCTGTAACAGTTTA 470
Query 612 CCGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGATTCTTCCTTTATTACAAAC 671
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 471 CAGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGCTTCTTCCTTCATTA-AAAC 529
Query 672 -TTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCGCTTTGCTC-TGCTTTGAGT 729
||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 530 TTTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCCCTTTGCTCTTG-TTTGAGT 588
Query 730 CTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTACAGAGAAGGCTGAAGAAAGCGGCAAA 789
|||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct 589 CTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTATAGAGAACGCCGAAGAAAGCGGCAAA 648
Query 790 AGTGCAAGCCTTTTGTCGAAACTGCACTTT-GGAATTTTTCAATTTCTTTCTGAAGCCTA 848
|||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||
Sbjct 649 AGTGCAAGCCTTTTGTCGAAACTGCA-TTTCGGAATTTCTCAATATCTTTCTGAAGCCTA 707
Query 849 TGCTCTTTTGTCATCTAGACTAACA-GGAGAATATAAAGACCTATCGACCCGCTTTCTCG 907
| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 708 TTCTCTTTTGTCATCTAGACCAA-ATGGAGAATATAAAGACCTATCGACCCGCTTTCTCG 766
Query 908 AGTATGTAACAACAATGGGAGCTTTACACGAACTAAAGAGCCAAAAATACTTAGCGGAAT 967
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 767 AGTATGTAACAACAATGGGAGCTTTACACGAGCTAAAGAGCCAAAAACACTTAGCGGAAG 826
Query 968 TGCTAGAATCCGAAGATCGAGTAGGCGATGCGGTAGGGGTTCTCCGGCGTGCCTTAGCAG 1027
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 827 TGCTGGAATCCGAAGATCGAGTAGGCGAAGCGGTTGGGGTTCTCCGGCGTGCCTTAGCAG 886
Query 1028 CGGCGAAGAAGAGTACGCCGTCCAAAGATGACAAGTGGATAGCAATATTCAAGAAGGAGA 1087
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||
Sbjct 887 CGGCGAAGAAGAGTACGCCGTCGAAAGATGACAAGTGGATATCGATATTCAAGAAAGAGA 946
Query 1088 GAGAGGATGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTAC 1147
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GAGAGGAAGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTAC 1006
Query 1148 AGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGAGAAGATTGTTAATCTCA 1207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1007 AGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGCGAAGATTGTTAATCTCA 1066
Query 1208 TTCCTTATACTCCCACAAGAGT-GGTACGAGAACTTCGATTTAAGTCTTAG 1257
||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1067 TTCCTTATACTCCCACAAG-GTTGGTACGAGAACTTCGATTTAAGTCTTAG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52564538100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5