BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13310.1 Length=1406 Score E Sequences producing significant alignments: (Bits) Value Ahg911122 jgi|Araly1|911122|Al_scaffold_0001_1376 1626 0.0 > Ahg911122 jgi|Araly1|911122|Al_scaffold_0001_1376 Length=1116 Score = 1626 bits (880), Expect = 0.0 Identities = 1051/1131 (93%), Gaps = 21/1131 (2%) Strand=Plus/Plus Query 133 ATGACGATGATGCAGTACCTAATTCCAGAACCAAAAACAAAAGAGATTTTGTACGAGAAA 192 |||||||||||||||||| ||||||||||||||||||| ||||||||| | | ||||||| Sbjct 1 ATGACGATGATGCAGTACGTAATTCCAGAACCAAAAACTAAAGAGATTGTATTCGAGAAA 60 Query 193 ACGTTACAAGCTGCTGGTCCAATTACTCTAGGAGAAGTTAAAGAGTTAACTTCTAAGCGT 252 ||||| ||||||||||||||| ||||||||| |||||||||||| |||||||| |||||| Sbjct 61 ACGTTGCAAGCTGCTGGTCCAGTTACTCTAGAAGAAGTTAAAGACTTAACTTCGAAGCGT 120 Query 253 AAAATTATCGAAGAATCTGTAAACAAAACCAGCAAAGTCATTGATTCAACTACAAGAGAG 312 ||||||||||||||||| |||||||||||||| ||||| | | || ||| | | | Sbjct 121 AAAATTATCGAAGAATCAGTAAACAAAACCAGAAAAGT-A--G--TC-ACT-GATG-CA- 171 Query 313 A-TGACCAGAGGACTAACTTCTGCTTGTGAGCAGGATCTTCATAAACTTGGAGAATACCT 371 | | || | |||| |||||||||||||||| |||||||||||| ||||||| ||||| | Sbjct 172 ACT-ACAATAGGATTAACTTCTGCTTGTGAAAAGGATCTTCATAGACTTGGACAATACAT 230 Query 372 TCCATTACTCTTTAACTTGGTGCATTACACTGATAAGATTAAACGGGTTTCGAATCTTAA 431 ||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 231 TCCGTTACTCTTTAACTTGGTTCATTACACCGATAAGATTAAGCGGGTTTCGAATCTTAA 290 Query 432 GATAAGATGGAGTAGTGGTTTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATT 491 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 291 GATAAGATGGAGTAGTGGATTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATT 350 Query 492 CTTCCAAGTCGATAACATAATGTTCGAGTTTGGAATGGTTCTTTTCATTTACGCGGTTAA 551 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct 351 CTTCCAAGTCGATAACATAATGTTCGAGCTTGGAATGGTTCTTTTCGTTTACGCAGTTAA 410 Query 552 GCTCCGCGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAGAAAGCGGTAGCAGTTTA 611 |||||| ||||||||||||||||||||||||||||||||||| ||| | ||| ||||||| Sbjct 411 GCTCCGGGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAAAAATCTGTAACAGTTTA 470 Query 612 CCGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGATTCTTCCTTTATTACAAAC 671 | |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| Sbjct 471 CAGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGCTTCTTCCTTCATTA-AAAC 529 Query 672 -TTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCGCTTTGCTC-TGCTTTGAGT 729 ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 530 TTTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCCCTTTGCTCTTG-TTTGAGT 588 Query 730 CTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTACAGAGAAGGCTGAAGAAAGCGGCAAA 789 |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| Sbjct 589 CTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTATAGAGAACGCCGAAGAAAGCGGCAAA 648 Query 790 AGTGCAAGCCTTTTGTCGAAACTGCACTTT-GGAATTTTTCAATTTCTTTCTGAAGCCTA 848 |||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| Sbjct 649 AGTGCAAGCCTTTTGTCGAAACTGCA-TTTCGGAATTTCTCAATATCTTTCTGAAGCCTA 707 Query 849 TGCTCTTTTGTCATCTAGACTAACA-GGAGAATATAAAGACCTATCGACCCGCTTTCTCG 907 | |||||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 708 TTCTCTTTTGTCATCTAGACCAA-ATGGAGAATATAAAGACCTATCGACCCGCTTTCTCG 766 Query 908 AGTATGTAACAACAATGGGAGCTTTACACGAACTAAAGAGCCAAAAATACTTAGCGGAAT 967 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 767 AGTATGTAACAACAATGGGAGCTTTACACGAGCTAAAGAGCCAAAAACACTTAGCGGAAG 826 Query 968 TGCTAGAATCCGAAGATCGAGTAGGCGATGCGGTAGGGGTTCTCCGGCGTGCCTTAGCAG 1027 |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 827 TGCTGGAATCCGAAGATCGAGTAGGCGAAGCGGTTGGGGTTCTCCGGCGTGCCTTAGCAG 886 Query 1028 CGGCGAAGAAGAGTACGCCGTCCAAAGATGACAAGTGGATAGCAATATTCAAGAAGGAGA 1087 |||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||| Sbjct 887 CGGCGAAGAAGAGTACGCCGTCGAAAGATGACAAGTGGATATCGATATTCAAGAAAGAGA 946 Query 1088 GAGAGGATGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTAC 1147 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 GAGAGGAAGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTAC 1006 Query 1148 AGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGAGAAGATTGTTAATCTCA 1207 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1007 AGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGCGAAGATTGTTAATCTCA 1066 Query 1208 TTCCTTATACTCCCACAAGAGT-GGTACGAGAACTTCGATTTAAGTCTTAG 1257 ||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1067 TTCCTTATACTCCCACAAG-GTTGGTACGAGAACTTCGATTTAAGTCTTAG 1116 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52564538100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5