BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13330.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334636 jgi|Araly1|334636|fgenesh1_pg.C_scaffold_1001201 1086 0.0
Ahg471490 jgi|Araly1|471490|fgenesh2_kg.1__1444__AT1G13340.1 207 1e-52
> Ahg334636 jgi|Araly1|334636|fgenesh1_pg.C_scaffold_1001201
Length=681
Score = 1086 bits (588), Expect = 0.0
Identities = 651/682 (95%), Gaps = 2/682 (0%)
Strand=Plus/Plus
Query 74 ATGGCTCCTAAATCGGATAACACCGAAGCTATCGTACTCAACTTTGTCAATGAGCAAAAC 133
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTCCTAAATCGGATAACACAGAAGCTATCGTACTCAACTTTGTAAATGAGCAAAAC 60
Query 134 AAACCTCTAAACACTCAAAATGCAGCTGATGCTCTACAAAAGTTTAACCTTAAGAAGACT 193
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAACCTCTAAACACTCAAAATGCAGCTGATGCTCTGCAAAAGTTTAACCTTAAGAAGACT 120
Query 194 GCGGTGCAAAAGGCACTTGATAGTCTTGCTGATGCTGGAAAAATCACGTTTAAAGAGTAT 253
|| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 121 GCAGTTCAAAAGGCACTTGATAGCCTTGCTGATGCCGGAAAAATCACGTTCAAAGAGTAT 180
Query 254 GGTAAGCAGAAGATATACATTGCTAGACAAGACCAGTTTGAGATTCCAAACTCTGAAGAA 313
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GGTAAGCAGAAGATTTACATTGCTAGACAAGACCAGTTTGAGATTCCAAACAGTGAAGAA 240
Query 314 CTTGCTCAAATGAAAGAAGACAATGCCAAACTTCAAGAACAGCTTCAAGAGAAGAAGAAA 373
|||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 241 CTTGCTCAAATGAAAGAAGAAAACGCCAAACTTCAAGAACAACTCCAAGAGAAGAAGAAA 300
Query 374 ACTATCAGTGATGTGGAATCAGAAATCAAGAGTTTGCAGTCAAACTTGACACTAGAAGAG 433
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ACAATCAGTGATGTGGAGTCAGAAATCAAGAGCTTGCAGTCAAACTTGACACTAGAAGAG 360
Query 434 ATACAAGAGAAAGATGCCAAACTAAGGAAA-GAGGTTAAGGAAATGGAAGAGAAACTGGT 492
||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
Sbjct 361 ATACAAGAGAAAGATGCCAAACTAA-GAAAGGAGGTTAGGGAAATGGAAGAGAAACTGAT 419
Query 493 CAAACTACGTGAAGGGATTACATTGGTGAGGCCAGAAGACAAAAAGGCTGTTGAAGATAT 552
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 420 CAAACTACGCGAAGGGATTACATTGGTGAGGCCAGAAGATAAAAAAGCTGTTGAAGATAT 479
Query 553 GTATGCGGATAAGATTAATCAGTGGCGCAAGCGTAAGAGGATGTTCAGAGACATTTGGGA 612
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTACGCGGATAAGATTAATCAGTGGCGCAAGCGTAAGAGGATGTTCAGAGACATTTGGGA 539
Query 613 TACTGTAACAGAGAATTCTCCCAAAGATGTGAAGGAACTAAAGGAGGAGCTTGGAATTGA 672
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TACTGTAACAGAGAATTCTCCCAAAGATGTTAAGGAACTAAAGGAGGAGCTTGGAATTGA 599
Query 673 ATACGATGAAGATGTCGGTCTAAGTTTCCAGGCATATGCTGACCTAATTCAACATGGTAA 732
||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 ATATGATGAAGATGTCGATCTAAGTTTCCAGGCATATTCTGACCTAATTCAACATGGTAA 659
Query 733 AAAGAGGCCTCGAGGACAGTAA 754
|||||||||| |||||||||||
Sbjct 660 AAAGAGGCCTAGAGGACAGTAA 681
> Ahg471490 jgi|Araly1|471490|fgenesh2_kg.1__1444__AT1G13340.1
Length=1439
Score = 207 bits (112), Expect = 1e-52
Identities = 118/121 (98%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 771 CCTCAGTGGACGTAGAAGCTTGGTCTAGTTTCAGAACAATGTTATTCTCTGCAGCAATCT 830
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 634 CCTCAGTGGACGTAGAAGCTTCTTCTAGTTTCAGAACAATGTTATTCTCTGCAGCAATCT 575
Query 831 CCTTCAAAGCCTTCATTCTAACTTCTTTCGGTGGAGGTCTTGTCGACAACTTCTGAATTA 890
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 574 CCTTCAAAGCCTTCATTCTAACTTCTTTCGGTGGATGTCTTGTCGACAACTTCTGAATTA 515
Query 891 T 891
|
Sbjct 514 T 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5