BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13340.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471490 jgi|Araly1|471490|fgenesh2_kg.1__1444__AT1G13340.1 2198 0.0
> Ahg471490 jgi|Araly1|471490|fgenesh2_kg.1__1444__AT1G13340.1
Length=1439
Score = 2198 bits (1190), Expect = 0.0
Identities = 1336/1407 (95%), Gaps = 8/1407 (1%)
Strand=Plus/Plus
Query 56 CTCTTCTCTGCAACTCGGCCATGGGGAAGAAGCTTGACGCTTTGCTTGGTCGCAGTTTCA 115
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 32 CTCCTCTCTGCAACTCGGCCATGGGGAAGAAGCTTGACGCTTTGCTTGGTCGGAGTTTCA 91
Query 116 AGACCAACAAGTTCAAGTCTCTTATCACCTTAGCTCTCACAAGGCTCTCTATTCTCAAGA 175
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 92 AGACCAACAAGTTCAAGTCTCTTATCACCTTAGCTCTCACAAGGCTCTTTATTCTTAAGA 151
Query 176 ACCAGCGTCAAGCCAGACTCTCTCAAGCCATCTCTGATGTCACCGAGCTTCTTAAGCTCG 235
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 152 ACCAGCGTCAAGCCAGACTCTCTCAAGCCATCTCTGATGTCACCGAGCTTCTCAAGCTCG 211
Query 236 GCCAACATGAGCACGCTTACCATAGAGTCGATCAAGTCGTCAAAGACCAAAACACTCTCG 295
|||| || ||| | ||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 212 GCCATCACGAGAATGCTTACCATAGAGTCGACCAAGTCGTCAAAGACCAAAACACCCTGG 271
Query 296 ACGTTCTCTTCTTCATCCATGGCTACTTCACTCTCTGTCTCGATCGTATTCACCTCTTTG 355
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 272 ACGTTCTCTTCTTCATCCATGGCTACTTCACTCTCTGTATCGACCGTATTCACCTCTTTG 331
Query 356 AACACAACAGAGATTGTCCTGAAGAGCTTCTAGAAGCTGTTTCGGGTTTGCTATTTGCAG 415
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 332 AACACAACAGAGATTGTCCTGAAGAGCTTCTAGAAGCTGTTTCGGGCTTGCTTTTTGCAG 391
Query 416 CTTCTAGAATCGGTGAATTCCCTGAGCTTCAAGAGATTCGTAATGTTTTGATTTCGCGTT 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 392 CTTCTAGAATCGGTGAATTCCCTGAGCTTCAAGAGATTCGTAGTGTTTTGATTTCACGTT 451
Query 476 TTGGCAAAGATCTCGCGGCTCGGTCTATTGAGTTGCGCAGTAATTGTGGGGTTGATCCCA 535
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 452 TTGGTAAAGATCTCGCTGCGCGGTCTATTGAGTTGCGCAGTAATTGTGGGGTTGATCGCA 511
Query 536 AAATAATTCAGAAGTTGTCGACAAGACCTCCACCGAAAGAAGTTAGAATGAAGGCTTTGA 595
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 512 AAATAATTCAGAAGTTGTCGACAAGACATCCACCGAAAGAAGTTAGAATGAAGGCTTTGA 571
Query 596 AGGAGATTGCTGCAGAGAATAACATTGTTCTGAAACTAGACCAAGCTTCTACGTCCACTG 655
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 572 AGGAGATTGCTGCAGAGAATAACATTGTTCTGAAACTAGAAGAAGCTTCTACGTCCACTG 631
Query 656 AGGGAACAACAAATATGCAGGGAACATCAGATGTTAGTAAGACTAAGCTAACAAGTAAAG 715
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 632 AGGGAACAACACATATGCAGGGAACATCAGATGTTAGTAAGGCTAAGCTAACAAGTGAAG 691
Query 716 ATG-GCAGAGGAGAAGGTTATGGTTTATCTGATTCGGTCAAGAGAGGAAAGAAGAAGTAC 774
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ATGAG-AGAGGAGAAGGTTATGGTTTATCTGATTCGGTCAAGAGAGGAAAGAAGAAGTAC 750
Query 775 AAAGATGTGGCTGATGCTGCACAAGCAGCGTTTGAGTCAGCAGCTCATGCAGCAGAGGCT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AAAGATGTGGCTGATGCTGCACAAGCAGCGTTTGAGTCAGCAGCTCATGCAGCAGAGGCT 810
Query 835 GCACAAGCGGCTGTGGAGCTTTCTCAGTTTTCTCCTCGTGGACATGACAGTCCGGGTAAC 894
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GCACGAGCGGCTGTGGAGCTTTCTCAGTTTTCTCCTCGTGGACATGACAGTCCGGGTAAC 870
Query 895 ATTGGTGGGGAAAATTCATTTCATGGTTCTGAAAACAAAGAGTCAGAACAAGAACAAGAA 954
|||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 871 ATTGGTGGGGGAAATTCATTTCATGGGTCTGAAAACAAAGAATCAGAACAAGAACAAGGA 930
Query 955 GGTAATGATGATTCTTCAGAAGGGGAAGGGGATGTGATGTCAGAATCTAAAAGGTCGATG 1014
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 931 GGTAATGATGATTCTTCAGAAGGGGAAGGGGATGTGAGGTCAGAATCTAAGAGGTCGATG 990
Query 1015 TCAGATTCAGAAGATATTATTGATG-TC-CC-AGTGATGTCATTCAGAGAAGACCCTGTG 1071
|| |||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 991 TCGGATTCAGAAGATATTATTGATGATCTCCCAGTGATGTCATTCAGAGAAGACCCTGTG 1050
Query 1072 AAGCTATTGGAGAAGGATACTATTATCTACGATAGTGAAGAAGAAACCCAACCTAGTGTT 1131
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 1051 AAGCTATTGGAGAAGGATACTGTTATCTATGATAGTGAAGAAGAAACCCAATCTAGTGTT 1110
Query 1132 GAGACTATTACTATTAGTAAGTCTAAAGATGAGCAAAATCGTATGGTTGGTTCGAATAGA 1191
||||||| ||||||| || |||||||||||||| || || |||||||||||||||||||
Sbjct 1111 GAGACTAATACTATTCCTACGTCTAAAGATGAGCCAAGTCTTATGGTTGGTTCGAATAGA 1170
Query 1192 GCGGATACAAGACATGTGGACCACATGGTTCGTTCAATTGAAGATCCTATTATGCGTAAA 1251
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1171 GCGGATACAAGACATGTGGACCACATTGTTCATTCAATTGAAGATCCTATTATGCGTAAA 1230
Query 1252 GCAGGTTTGAAGGGTCCAGTTTCAGTCAGGACAAGACAGGTTCGTGGATACTAAGTACAA 1311
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1231 GCAGGTTTGAAGGGTCCGGTTTCAGTCAGGACTAGACAGGTTCGTGGCTACTAAGTACAA 1290
Query 1312 ATGTTATAAGTTTTTCAGGTGCATCTAC--GGTGTAATCACTCAGTTTTGTACTTTTCTA 1369
|| |||||| ||||||||||||||||| ||| ||| |||| ||||||||| |||||||
Sbjct 1291 ATATTATAA-TTTTTCAGGTGCATCTATATGGTTTAACCACTGAGTTTTGTATTTTTCTA 1349
Query 1370 TGTTCTTTTTGTGGTCAAAGATGTAAGATTATTGTGTTCTTTATGGATATAAGCTTTCAA 1429
|||||||||| || |||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1350 TGTTCTTTTTTTGCTCAAGGGTGTAAGATTATTTTGTTCTTTATGGATATAAGCTTTCAA 1409
Query 1430 TGATGTTGTACAGTTGCATATGTGTGT 1456
|||||||| ||||||||||||||||||
Sbjct 1410 TGATGTTGAACAGTTGCATATGTGTGT 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5