BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13360.1

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920215 jgi|Araly1|920215|scaffold_101496.1                        922    0.0  


> Ahg920215 jgi|Araly1|920215|scaffold_101496.1
Length=629

 Score =  922 bits (499),  Expect = 0.0
 Identities = 591/634 (93%), Gaps = 12/634 (2%)
 Strand=Plus/Plus

Query  62   AAACGTAATTGC-CAAAGCTAT------GGAGAAGAAGTTGTTGGATATAACTCGGACTG  114
            ||||||||||||  ||||||||      ||||||||||||||||| | ||||||||||||
Sbjct  1    AAACGTAATTGCTAAAAGCTATGGAGGAGGAGAAGAAGTTGTTGGCTTTAACTCGGACTG  60

Query  115  ACTCGGCTGAGAAAAAGCGAGTCAGAGACGAGTCATTCGACGAAGCGGTTCTTGACTCGC  174
            |||| || |||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct  61   ACTCAGCCGAGAAAAAGCGAGTTAGAGACGAGTTATCCGACGAAGCGGTTCTTGACTCGC  120

Query  175  CGGAGGTGAAGAGGTTGAGAGATGATTTATTCGATGTCCTGGATGACTCGGATCCTGAAC  234
            ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  121  CGGAGGTGAAGAGGTTGAGAGATGATTTATTCGATGTTCTCGATGACTCGGATCCTGAAC  180

Query  235  CAGTGAGTCAAGATCTCGACTCGGTTATGAAAAGTTTCGAAGACGAGTTATCAACGGTCA  294
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  181  CAGTTAGTCAAGATCTCGACTCCGTTATGAAAAGTTTCGAAGACGAGTTATCAACGGTCA  240

Query  295  CCACCACGACGGCGCAAGGTTCCTCTACCGCCGGCGAAACTCAGCCTGATCTCGGATATC  354
            |||||||||||| |||||| || | | |||||| ||||||||||||||||||||| ||||
Sbjct  241  CCACCACGACGGGGCAAGGCTC-T-T-CCGCCGCCGAAACTCAGCCTGATCTCGGTTATC  297

Query  355  TTCTTGAAGCTTCCGATGATGAGCTTGGTTTACCACCACCTCCATCGATTTCTCCGGTTC  414
            |||| |||||||||||||| |||||||||||||| || |||||||| |||||||||||||
Sbjct  298  TTCTCGAAGCTTCCGATGACGAGCTTGGTTTACCTCCGCCTCCATCAATTTCTCCGGTTC  357

Query  415  CCGTCGCGAAGGAGGAGGTAACGACGGAGACGGTAACGGATTTGGTACGAGCGTCTTCTG  474
            |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct  358  CCGTCGCGAAGGAGGAGGAAACGACGGAGACGTTAACGGATTTGGTACGAGCGTCGTCTG  417

Query  475  ATTCGTCAGGAATCGACGAGATTTGGGGATTTGAAGATCACGTGTCGAATTACGGTGGTT  534
            |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| ||
Sbjct  418  ATTCGTCAGGAATCGACGAGATTTGGGGATTTGAAGATCACGTAACGAATTTCGGTGATT  477

Query  535  TAGATTTTGGTTCCGGCGTCGGAGATGGTGGAGATTACGTGGCTGTTGAGGGGTTGTTTG  594
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  478  TAGATTTTGGTTCCGGCGTCGGTGACGGTGGAGATTACGTGGCTGTTGAGGGGTTGTTTG  537

Query  595  AATTTTCCGACGATTGTTTTGACTCCGGCGATCTGTTTTCGTGGCGGTCGGAGTCGTTAC  654
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  538  AATTTTCCGACGATTGTTTTGATTCCGGCGATCTGTTTTCGTGGCGGTCGGAGTCGTTAC  597

Query  655  CGGCGGAATAAATAAATAACAAACtttttttttA  688
            |||||||||||| || ||||||||||||||||||
Sbjct  598  CGGCGGAATAAA-AA-TAACAAACTTTTTTTTTA  629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34768100304


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5