BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13370.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1 701 0.0
Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1 636 0.0
Ahg316489 jgi|Araly1|316489|fgenesh1_pm.C_scaffold_2001522 568 2e-161
Ahg472214 jgi|Araly1|472214|fgenesh2_kg.1__2168__AT1G19890.1 302 3e-81
> Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1
Length=533
Score = 701 bits (379), Expect = 0.0
Identities = 423/445 (95%), Gaps = 0/445 (0%)
Strand=Plus/Plus
Query 63 TTCTAAGCTCTCAGATTCTTGAAGAAGCCATGGCTCGTACGAAGCAATCCGCGAGAAAAT 122
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TTCTAAGCTATCAGATTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAAT 60
Query 123 CACACGGAGGAAAAGCTCCGACGAAGCAGCTCGCTACCAAGGCGGCAAGGAAATCTGCAC 182
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 61 CACACGGAGGAAAAGCTCCGAGGAAGCAGCTCGCTACCAAGGCGGCGAGGAAATCTGCGC 120
Query 183 CGACTACCGGAGGAGTCAAGAAACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTG 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CGACTACCGGAGGAGTCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTG 180
Query 243 AGATTCGTAAATACCAAAAGAGCACAGAGTTGTTGAACCGTAAACTTCCATTCCAACGTC 302
|||||||||||||||| ||||||||||||||||||| ||| ||||||||||| || ||||
Sbjct 181 AGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGCGTC 240
Query 303 TTGTTCGTGAAATCGCTCAAGATTTCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGT 362
||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 241 TTGTTCGTGAAATAGCCCAAGATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTGT 300
Query 363 TAGCTCTTCAAGAAGCTGCGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCT 422
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 301 TAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTGGGTTTGTTTGAAGACACAAATCTTT 360
Query 423 GTGCCATTCATGCAAAGAGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGA 482
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 361 GTGCCATTCATGCAAAGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGA 420
Query 483 TTCGTGCAGAGCGTGCTTAGAAATT 507
|||||| ||||||||||||||||||
Sbjct 421 TTCGTGGAGAGCGTGCTTAGAAATT 445
> Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1
Length=501
Score = 636 bits (344), Expect = 0.0
Identities = 399/426 (94%), Gaps = 2/426 (0%)
Strand=Plus/Plus
Query 78 TTCTTGAAGAAGCCATGGCTCGTACGAAGCAATCCGCGAGAAAATCACACGGAGGAAAAG 137
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAG 60
Query 138 CTCCGACGAAGCAGCTCGCTACCAAGGCGGCAAGGAAATCTGCACCGACTACCGGAGGAG 197
|||| | |||||| || ||||| ||||| || ||||||||||| |||| |||||| ||||
Sbjct 61 CTCCAAGGAAGCAACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAG 120
Query 198 TCAAGAAACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 257
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 180
Query 258 AAAAGAGCACAGAGTTGTTGAA-CCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATC 316
| ||||||||||||||||| || ||||||||||||||| || ||||||||||||||||||
Sbjct 181 AGAAGAGCACAGAGTTGTT-AATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATC 239
Query 317 GCTCAAGATTTCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAA 376
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 240 GCCCAAGATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAA 299
Query 377 GCTGCGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGCA 436
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 300 GCTGCGGAGGCATATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCA 359
Query 437 AAGAGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGCAGAGCGT 496
||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 AAGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGT 419
Query 497 GCTTAG 502
||||||
Sbjct 420 GCTTAG 425
> Ahg316489 jgi|Araly1|316489|fgenesh1_pm.C_scaffold_2001522
Length=711
Score = 568 bits (307), Expect = 2e-161
Identities = 351/373 (94%), Gaps = 0/373 (0%)
Strand=Plus/Plus
Query 92 ATGGCTCGTACGAAGCAATCCGCGAGAAAATCACACGGAGGAAAAGCTCCGACGAAGCAG 151
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 ATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAGCTCCGAGGAAGCTG 60
Query 152 CTCGCTACCAAGGCGGCAAGGAAATCTGCACCGACTACCGGAGGAGTCAAGAAACCTCAC 211
||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 61 CTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCAC 120
Query 212 CGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGAGCACAGAG 271
|||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAG 180
Query 272 TTGTTGAACCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATCGCTCAAGATTTCAAG 331
||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTGTTGATCCGTAAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 240
Query 332 ACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCGGAGGCATAT 391
||||||||||||||||||||||| || || || || ||||||||||||||||||||||||
Sbjct 241 ACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCATAT 300
Query 392 TTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGCAAAGAGGGTTACCATT 451
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 301 TTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATT 360
Query 452 ATGCCTAAAGATG 464
|||||||||||||
Sbjct 361 ATGCCTAAAGATG 373
Score = 516 bits (279), Expect = 9e-146
Identities = 319/339 (94%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 164 GCGGCAAGGAAATCTGCACCGACTACCGGAGGAGTCAAGAAACCTCACCGTTTCCGTCCT 223
||||| ||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 373 GCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCGTTACCGTCCC 432
Query 224 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGAGCACAGAGTTGTTGAACCGT 283
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 433 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 492
Query 284 AAACTTCCATTCCAACGTCTTGTTCGTGAAATCGCTCAAGATTTCAAGACGGATCTGAGA 343
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 493 AAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAGACGGATCTGAGA 552
Query 344 TTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCGGAGGCATATTTGGTTGGTTTG 403
||||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 553 TTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCATATTTGGTGGGTTTG 612
Query 404 TTTGAAGACACAAATCTCTGTGCCATTCATGCAAAGAGGGTTACCATTATGCCTAAAGAT 463
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 613 TTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATTATGCCTAAAGAT 672
Query 464 GTTCAATTGGCAAGAAGGATTCGTGCAGAGCGTGCTTAG 502
||||||||||||||||| ||||||| |||||||||||||
Sbjct 673 GTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTAG 711
> Ahg472214 jgi|Araly1|472214|fgenesh2_kg.1__2168__AT1G19890.1
Length=580
Score = 302 bits (163), Expect = 3e-81
Identities = 341/425 (80%), Gaps = 19/425 (4%)
Strand=Plus/Plus
Query 92 ATGGCTCGTACGAAGCAATCCGCGAGAAAATCACAC-GGAGGAAAAGCTCCGACG-AAGC 149
|||||||||||||||||| | ||||| ||||| || || ||||||| ||| | | |||
Sbjct 1 ATGGCTCGTACGAAGCAAACTGCGAGGAAATC-TACTGGTGGAAAAGGTCCAAGGAAAG- 58
Query 150 AGCTCGCTACCAAGGCGGCAAGGAAATCTG-CA-CCGA-C-TA-C-CGGAGGAGTCAAGA 203
| ||||||||||||||||| |||||| ||| | || | || | ||| || |||||||
Sbjct 59 AACTCGCTACCAAGGCGGCGAGGAAAACTGTTAGAAGACCGTACCGCGGTGGTGTCAAGA 118
Query 204 AACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGA 263
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 119 GGGCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGA 178
Query 264 GCACAGAGTTGTTGAA-CCGTAAACTT-CCATTCCAACGTCTTGTTCGTGAAATCGCTCA 321
| || || ||| | || ||||||| || || |||||||||||||||||||||||||||||
Sbjct 179 GTACCGACTTGCT-AATCCGTAAA-TTGCCTTTCCAACGTCTTGTTCGTGAAATCGCTCA 236
Query 322 AGATT-TCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTG 380
|||| | ||| |||| | || |||||||||||||| || | || |||||||| || |
Sbjct 237 AGATCAT-AAGGTGGATTTAAGGTTCCAAAGCCATGCGGTACTCGCACTTCAAGAGGCAG 295
Query 381 CGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGC-AAAG 439
| || ||||| ||||| |||||||| |||||||| ||||| ||||| || || || |||
Sbjct 296 CCGAAGCATACTTGGTGGGTTTGTTCGAAGACACGAATCTGTGTGCGATCCACGCCAAA- 354
Query 440 AGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGCAGAGCGTGCT 499
|||||||| || ||||| | || |||| ||||| ||| | || |||| || ||||||
Sbjct 355 AGGGTTACGATCATGCCCAGGGACATTCAGTTGGCCAGACGCATCCGTGGGGAACGTGCT 414
Query 500 TAGAA 504
| |||
Sbjct 415 T-GAA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5