BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13380.1
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471492 jgi|Araly1|471492|fgenesh2_kg.1__1446__AT1G13380.1 1120 0.0
> Ahg471492 jgi|Araly1|471492|fgenesh2_kg.1__1446__AT1G13380.1
Length=727
Score = 1120 bits (606), Expect = 0.0
Identities = 691/731 (95%), Gaps = 9/731 (1%)
Strand=Plus/Plus
Query 44 TCTCTTTCGCCGGAGATAATGGGAGAAGGGAAGGCCTCCACTCTGGTTTTCATCCTCGTC 103
||||||| | |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 TCTCTTTGGTCGGAGATAATGGGAGAAGGGAAGGCCTCGACTCTGGTTTTTATCCTCGTC 60
Query 104 GTCGCTCTTAGTTTAGTAGCCTTCGGCTTCTCCATCGCCGCCGAGCGCCGCCGCAGCATC 163
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTCGCTCTTAGTTTAGTCGCCTTCGGCTTCTCCATCGCCGCCGAGCGCCGCCGTAGCATC 120
Query 164 GGGAAATCTATTCAAGACCCAATAACAAACACAACGTTCTGCGTTTATGACTCTGATGTA 223
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGAAATCTATACAAGACCCAATAACAAACACAACGTTCTGCGTTTATGACTCTGATGTA 180
Query 224 GCCACTGGTTATGGAGTTGGAGCTTTCCTTTTCCTCCTCTCTAGTGAATCATTGCTTATG 283
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 GCCACTGGTTATGGAGTTGGAGCTTTCCTTTTCCTTCTCTCAAGTGAATCATTGCTTATG 240
Query 284 AGTGTTACCAAATGCATGTGTTTTGGAAGACCCTTAGCCCCTGGAAGTGACCGTGCTTGG 343
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 241 GGTGTTACCAAATGCATGTGTTTTGGAAGACCTTTAGCTCCGGGAAGTGACCGTGCTTGG 300
Query 344 TCTATTATCTATTTCATCTCTTCGTGGATGACATTTCTGGTAGCAGAAGCTTGTGTAATA 403
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTATTATCTATTTCATCTCTTCTTGGATGACATTTCTGGTAGCAGAAGCTTGTGTAATA 360
Query 404 GCAGGAGCGACCAAGAACGCATACCACACAAAGTACTTAAGTTCGCAAACCTTTTCGTGT 463
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GCAGGAGCGACGAAGAACGCATACCACACAAAGTACTTAAGCTCGCAAACCTTTTCGTGT 420
Query 464 GCATCA-TT-GCGTAAAGGAATTTTCATTGCAGGTGCAGTCTTTATAGTTGCTACTATGG 521
|||||| || | | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 421 GCATCACTTAG-G-AAAGGAATTTTCATTGCAGGAGCAGTGTTTATAGTTGCTACTATGG 478
Query 522 TTCTTAATGTCTACTACTACATGTATTTTACCAAGTCCGTCTCTTCGCCGCCTGCTCACA 581
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 TCCTTAATGTCTACTACTACATGTATTTTACCAAGTCTGTCTCTTCGCCGCCTGCTCACA 538
Query 582 AAGCCAACCGCTCTAGTTCCAATATTGGTATGGCGGGTTATGCATAAATGTCA-AAAAGA 640
|||| ||||||||| |||||||||| |||||||| || |||||||||| ||| |||| |
Sbjct 539 AAGCAAACCGCTCTGGTTCCAATATCGGTATGGCCGGATATGCATAAACGTCCTAAAA-A 597
Query 641 GGAAATGGTTAGTCATTTGCATTGTAGATGTAAGAAAGGAAAGAGATTGTTGCATTGTTA 700
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 GGAAATGGTTAGTCATTTGCATTGTAGATGTAAGAAAGAAAAGAGATTGTTGCATTGTTA 657
Query 701 CAACACTTGGTTACT-CT-TATATCTTTTGCTTATATATCTCTTACTTATTTATGAAAAT 758
||||||||||||||| || |||||||||||||||||||| ||| |||| |||||||||||
Sbjct 658 CAACACTTGGTTACTACTCTATATCTTTTGCTTATATATTTCT-ACTTGTTTATGAAAAT 716
Query 759 TTTCGCTATTT 769
||||| |||||
Sbjct 717 TTTCGTTATTT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28592187750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5