BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G13390.1

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471493 jgi|Araly1|471493|fgenesh2_kg.1__1447__AT1G13390.2         881    0.0  


> Ahg471493 jgi|Araly1|471493|fgenesh2_kg.1__1447__AT1G13390.2
Length=1082

 Score =  881 bits (477),  Expect = 0.0
 Identities = 550/583 (94%), Gaps = 14/583 (2%)
 Strand=Plus/Plus

Query  83   TAATTCACTTTTTCTTTGTGGTTTGATTGATTCTTTGAAGCAGCAACCAAAGATGATGAA  142
            ||||||||| ||| | ||| ||||||||||||||||| |  |||||||||||||||||||
Sbjct  206  TAATTCACTATTT-TGTGT-GTTTGATTGATTCTTTG-A--AGCAACCAAAGATGATGAA  260

Query  143  CAGCTGTGGAATCCAACAAAACGCTTTTGAAGAGATGAGGAGAAACGCCGCCGTTTCTGA  202
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  261  CAGCTGTGGAATCCAACAAAACGCTTTTGAAGAGATGAAGAGAAACGCCGTCGTTTCTGA  320

Query  203  TCGGAGAGACGCCGTGATTTGTCCTAAACCTCGTCGTGTTGGTGCTCTTAATCACCACTC  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  TCGGAGAGACGCCGTGATTTGTCCTAAACCTCGTCGTGTTGGTGCTCTTAATCACCACTC  380

Query  263  TTCTCGATCTCTCCGTTGGCAACTCAATCATCAGATGGAATTATGTGAATCGAATTCAGG  322
            ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  381  TTCTCGATCTCTCCGATGGCAACTCAATCATCAGATGGAATCATGTGAATCGAATTCAGG  440

Query  323  AAGTGAGATTTTGGATTTCATCCTCACAAAGggtggtggtggtggtggtgAGCAAGATCA  382
            ||||||||||||||||||||||||||||||        | ||||||||||| ||||||||
Sbjct  441  AAGTGAGATTTTGGATTTCATCCTCACAAA--------G-GGTGGTGGTGAACAAGATCA  491

Query  383  GACGAGGACGGTGATGACGCCACCTCTGTTCTTTACAGGGTCACCTCCAAGTAGAGTTTC  442
            |||||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||||||
Sbjct  492  GACGAGGAGGGTGATGACGCCGCCTTTGTTCTTCACAGGGTCACCACCAAGTAGAGTTTC  551

Query  443  TAACCCATTAACAAAAGATTCGCTTTTTCGAGAAGAGCTTCTCATGGTGGCTTCTCCGAG  502
            ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| 
Sbjct  552  TAACCCATTAACAAAAGATTCACTTTTTCGAGAAGAGCTTCTCGTGGTGGCTTCTCCGAC  611

Query  503  TCCATCGACTCCACGAGCAACCAAACCGCAGCCACCGTCTTCTCCAAGGAACGGTAGTTG  562
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  612  TCCATCGACTCCACGAGCAACCAAACCGCAGCCACCGTCTTCTCCAAGGAACGGCAGTTG  671

Query  563  TGTTATGGCGGCGACGAGTTTCGGGAACAATCCTGTGGTTCGTGTTGTGGGGTTTGATTG  622
            ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct  672  TGTTATGGCGGCGACGAGTTTCGGGAACAATCCCGTGGTTCGTGTTGTGGGATTCGATTG  731

Query  623  TGACAGACGCAGCAGCAACAGGAGCATTTCGACTCTTGCATAA  665
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  TGACAGACGCAGCAGCAACAGGAGCATTTCGACTCTTGCATAA  774



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24398666880


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5