BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13400.1
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471495 jgi|Araly1|471495|fgenesh2_kg.1__1449__AT1G13400.1 1038 0.0
> Ahg471495 jgi|Araly1|471495|fgenesh2_kg.1__1449__AT1G13400.1
Length=795
Score = 1038 bits (562), Expect = 0.0
Identities = 729/804 (91%), Gaps = 34/804 (4%)
Strand=Plus/Plus
Query 1 GAGTTCCATGCTCAATGTTCTCATTTCTAAAGAGATAAA-AAAGAGAGAGATAAACTGAT 59
||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| ||||||||
Sbjct 1 GAGTTCCATGCTCAATGTTCTCATTGCTAAAGAGAGAAATAAAGAGAAAGAGAAACTGAT 60
Query 60 TAAAAGAAATTTCACAAAGCTCTCTTTAATTTATCCCTCCATCTTCACTCTC-TCAACTC 118
|||||||||||||||||||||||| ||||| |||||||||||||| | |||| ||
Sbjct 61 TAAAAGAAATTTCACAAAGCTCTC-----TTTAT--CTCCATCTTCACTC-CATCAAGTC 112
Query 119 TTTATCCTT---AGTTTCGT-CTCTCCTGTCTTCTTGGTAACCATGAGAGCTGATGAAAA 174
||||||||| |||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 113 TTTATCCTTACAAGTTTCTTCCTCTCCTGTCTTCTTGGTAACCATGAGAGCTGATGATAA 172
Query 175 TAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCATTCTT 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 173 TAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCTTTCTT 232
Query 235 TGAAGAAGGCTTCTCTTCATCTTCTTCTTCTGGAGGGTTTAGAGAGAAGCAAACAAAAGA 294
||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 233 TGAAGAAGGCTCCTCTTCCTCTTCCTCTTCTGGAGGGTTTAGAGAGAAGCAAACCAAAGA 292
Query 295 TGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTCGG 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 293 CGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTAGG 352
Query 355 TGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGA 412
Query 415 ACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACCTCCATCGTTTAGTTATCA 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 413 ACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACTTCCATCGTTTAGTTATCA 472
Query 475 TCAAGGAGATGTGCATATAGGAGACCTAACA-CAATTTAAACCAATGATGTACCCACCGA 533
||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |
Sbjct 473 TCAAGGAGATGTGCATATAGGAGACCTAACATCA-TTCAAACCAATGATGTATCCACCAA 531
Query 534 GACATTTCTC-A-CTCC--C-CGGC-TCTTCCTCCATCCTCCAGCTGCAACCACCATATC 587
||| |||||| | |||| | | || ||||||||| |||||||||||| ||||||| ||
Sbjct 532 GACTTTTCTCTAGCTCCTTCTCCGCCTCTTCCTCCGCCCTCCAGCTGCAGCCACCATTTC 591
Query 588 TTTATCCTCCGCTGTCTTCACCGTTTCCTCAACATAACACCAAC-AT-A-------GGCA 638
|||||||||| | ||| ||||||||||||| ||| |||||||| || | ||||
Sbjct 592 TTTATCCTCCTCCGTCACCACCGTTTCCTCACCATCACACCAACGATTACTATCTAGGCA 651
Query 639 ACAACGGTACGCGTCACCAAACCCTAACCAATAGCGTTTGCGGTGGTCGTGCACTACCTG 698
|||||||| | | |||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 652 ACAACGGTTCACATCACCAAATCCTAACCAATAGCGTTTGCGGTGCTCGTGCACTAGCTG 711
Query 699 ACTCAAGTTACACCTTCATCGGTGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCAC-AT 757
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 712 ACTCGAGTTACACTTTCATCGGAGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCTCTAC 771
Query 758 CT--ACCTCCACATCATGGGCTAT 779
|| ||||||||||||||||||||
Sbjct 772 CTTTACCTCCACATCATGGGCTAT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28820925252
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5