BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13400.1 Length=781 Score E Sequences producing significant alignments: (Bits) Value Ahg471495 jgi|Araly1|471495|fgenesh2_kg.1__1449__AT1G13400.1 1038 0.0 > Ahg471495 jgi|Araly1|471495|fgenesh2_kg.1__1449__AT1G13400.1 Length=795 Score = 1038 bits (562), Expect = 0.0 Identities = 729/804 (91%), Gaps = 34/804 (4%) Strand=Plus/Plus Query 1 GAGTTCCATGCTCAATGTTCTCATTTCTAAAGAGATAAA-AAAGAGAGAGATAAACTGAT 59 ||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| |||||||| Sbjct 1 GAGTTCCATGCTCAATGTTCTCATTGCTAAAGAGAGAAATAAAGAGAAAGAGAAACTGAT 60 Query 60 TAAAAGAAATTTCACAAAGCTCTCTTTAATTTATCCCTCCATCTTCACTCTC-TCAACTC 118 |||||||||||||||||||||||| ||||| |||||||||||||| | |||| || Sbjct 61 TAAAAGAAATTTCACAAAGCTCTC-----TTTAT--CTCCATCTTCACTC-CATCAAGTC 112 Query 119 TTTATCCTT---AGTTTCGT-CTCTCCTGTCTTCTTGGTAACCATGAGAGCTGATGAAAA 174 ||||||||| |||||| | |||||||||||||||||||||||||||||||||||| || Sbjct 113 TTTATCCTTACAAGTTTCTTCCTCTCCTGTCTTCTTGGTAACCATGAGAGCTGATGATAA 172 Query 175 TAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCATTCTT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 173 TAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCTTTCTT 232 Query 235 TGAAGAAGGCTTCTCTTCATCTTCTTCTTCTGGAGGGTTTAGAGAGAAGCAAACAAAAGA 294 ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 233 TGAAGAAGGCTCCTCTTCCTCTTCCTCTTCTGGAGGGTTTAGAGAGAAGCAAACCAAAGA 292 Query 295 TGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTCGG 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 293 CGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTAGG 352 Query 355 TGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 TGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGA 412 Query 415 ACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACCTCCATCGTTTAGTTATCA 474 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 413 ACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACTTCCATCGTTTAGTTATCA 472 Query 475 TCAAGGAGATGTGCATATAGGAGACCTAACA-CAATTTAAACCAATGATGTACCCACCGA 533 ||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| | Sbjct 473 TCAAGGAGATGTGCATATAGGAGACCTAACATCA-TTCAAACCAATGATGTATCCACCAA 531 Query 534 GACATTTCTC-A-CTCC--C-CGGC-TCTTCCTCCATCCTCCAGCTGCAACCACCATATC 587 ||| |||||| | |||| | | || ||||||||| |||||||||||| ||||||| || Sbjct 532 GACTTTTCTCTAGCTCCTTCTCCGCCTCTTCCTCCGCCCTCCAGCTGCAGCCACCATTTC 591 Query 588 TTTATCCTCCGCTGTCTTCACCGTTTCCTCAACATAACACCAAC-AT-A-------GGCA 638 |||||||||| | ||| ||||||||||||| ||| |||||||| || | |||| Sbjct 592 TTTATCCTCCTCCGTCACCACCGTTTCCTCACCATCACACCAACGATTACTATCTAGGCA 651 Query 639 ACAACGGTACGCGTCACCAAACCCTAACCAATAGCGTTTGCGGTGGTCGTGCACTACCTG 698 |||||||| | | |||||||| ||||||||||||||||||||||| |||||||||| ||| Sbjct 652 ACAACGGTTCACATCACCAAATCCTAACCAATAGCGTTTGCGGTGCTCGTGCACTAGCTG 711 Query 699 ACTCAAGTTACACCTTCATCGGTGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCAC-AT 757 |||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | | Sbjct 712 ACTCGAGTTACACTTTCATCGGAGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCTCTAC 771 Query 758 CT--ACCTCCACATCATGGGCTAT 779 || |||||||||||||||||||| Sbjct 772 CTTTACCTCCACATCATGGGCTAT 795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28820925252 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5